data_C1Y # _chem_comp.id C1Y _chem_comp.name "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-propylpyrrolidin-3-ol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H21 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5'-deoxy-5'-Propyl-DADMe-Immucillin-A" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-09-11 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 275.349 _chem_comp.one_letter_code ? _chem_comp.three_letter_code C1Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6AYO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C1Y C4 C1 C 0 1 Y N N -31.766 8.347 94.688 2.233 -0.506 -0.343 C4 C1Y 1 C1Y C5 C2 C 0 1 Y N N -32.262 9.545 94.033 3.377 0.303 -0.223 C5 C1Y 2 C1Y C6 C3 C 0 1 Y N N -31.984 10.809 94.731 4.494 -0.227 0.434 C6 C1Y 3 C1Y C10 C4 C 0 1 N N N -31.878 5.747 93.984 -0.151 -0.123 -1.430 C10 C1Y 4 C1Y C20 C5 C 0 1 N N N -35.047 6.322 97.200 -4.738 0.021 0.070 C20 C1Y 5 C1Y C21 C6 C 0 1 N N N -36.578 6.448 97.054 -5.225 -1.429 0.044 C21 C1Y 6 C1Y C8 C7 C 0 1 Y N N -32.807 7.813 92.761 1.821 1.487 -1.318 C8 C1Y 7 C1Y C22 C8 C 0 1 N N N -37.364 6.334 98.351 -6.684 -1.469 -0.415 C22 C1Y 8 C1Y "O3'" O1 O 0 1 N N N -33.011 3.151 97.144 -2.757 2.010 1.905 "O3'" C1Y 9 C1Y "C3'" C9 C 0 1 N N R -33.170 4.576 97.209 -2.753 1.514 0.565 "C3'" C1Y 10 C1Y "C2'" C10 C 0 1 N N N -32.075 5.204 96.384 -1.312 1.436 0.028 "C2'" C1Y 11 C1Y "N1'" N1 N 0 1 N N N -32.611 5.022 95.020 -1.033 0.013 -0.263 "N1'" C1Y 12 C1Y "C1'" C11 C 0 1 N N N -34.082 5.246 95.087 -2.355 -0.614 -0.519 "C1'" C1Y 13 C1Y "C4'" C12 C 0 1 N N S -34.462 5.050 96.555 -3.279 0.061 0.529 "C4'" C1Y 14 C1Y C9 C13 C 0 1 Y N N -32.153 7.223 93.831 1.246 0.299 -1.055 C9 C1Y 15 C1Y N3 N2 N 0 1 Y N N -31.097 8.396 95.866 2.252 -1.740 0.169 N3 C1Y 16 C1Y N7 N3 N 0 1 Y N N -32.874 9.169 92.908 3.093 1.505 -0.826 N7 C1Y 17 C1Y N6 N4 N 0 1 N N N -32.399 11.979 94.203 5.649 0.523 0.583 N6 C1Y 18 C1Y N1 N5 N 0 1 Y N N -31.314 10.753 95.910 4.422 -1.466 0.912 N1 C1Y 19 C1Y C2 C14 C 0 1 Y N N -30.885 9.588 96.441 3.326 -2.192 0.778 C2 C1Y 20 C1Y H1 H1 H 0 1 N N N -32.110 5.268 93.021 -0.141 -1.163 -1.758 H1 C1Y 21 C1Y H2 H2 H 0 1 N N N -30.805 5.634 94.200 -0.517 0.510 -2.238 H2 C1Y 22 C1Y H3 H3 H 0 1 N N N -34.801 6.312 98.272 -4.816 0.449 -0.930 H3 C1Y 23 C1Y H4 H4 H 0 1 N N N -34.580 7.198 96.725 -5.352 0.598 0.761 H4 C1Y 24 C1Y H5 H5 H 0 1 N N N -36.798 7.429 96.608 -4.611 -2.006 -0.647 H5 C1Y 25 C1Y H6 H6 H 0 1 N N N -36.922 5.652 96.377 -5.147 -1.857 1.043 H6 C1Y 26 C1Y H7 H7 H 0 1 N N N -33.212 7.270 91.919 1.345 2.305 -1.839 H7 C1Y 27 C1Y H8 H8 H 0 1 N N N -38.439 6.437 98.139 -7.298 -0.892 0.276 H8 C1Y 28 C1Y H9 H9 H 0 1 N N N -37.173 5.353 98.810 -6.762 -1.041 -1.415 H9 C1Y 29 C1Y H10 H10 H 0 1 N N N -37.049 7.130 99.042 -7.031 -2.502 -0.434 H10 C1Y 30 C1Y H11 H11 H 0 1 N N N -33.692 2.732 97.658 -2.416 2.911 1.992 H11 C1Y 31 C1Y H12 H12 H 0 1 N N N -33.119 4.937 98.247 -3.361 2.153 -0.075 H12 C1Y 32 C1Y H13 H13 H 0 1 N N N -31.118 4.678 96.516 -1.223 2.026 -0.885 H13 C1Y 33 C1Y H14 H14 H 0 1 N N N -31.945 6.269 96.628 -0.615 1.808 0.779 H14 C1Y 34 C1Y H16 H16 H 0 1 N N N -34.330 6.266 94.759 -2.697 -0.393 -1.530 H16 C1Y 35 C1Y H17 H17 H 0 1 N N N -34.610 4.518 94.453 -2.309 -1.690 -0.355 H17 C1Y 36 C1Y H18 H18 H 0 1 N N N -35.210 4.246 96.623 -3.169 -0.415 1.503 H18 C1Y 37 C1Y H19 H19 H 0 1 N N N -33.318 9.792 92.264 3.706 2.254 -0.893 H19 C1Y 38 C1Y H20 H20 H 0 1 N N N -32.134 12.731 94.807 5.690 1.426 0.230 H20 C1Y 39 C1Y H21 H21 H 0 1 N N N -31.977 12.108 93.306 6.417 0.145 1.040 H21 C1Y 40 C1Y H22 H22 H 0 1 N N N -30.344 9.618 97.375 3.312 -3.193 1.182 H22 C1Y 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C1Y C8 N7 SING Y N 1 C1Y C8 C9 DOUB Y N 2 C1Y N7 C5 SING Y N 3 C1Y C9 C10 SING N N 4 C1Y C9 C4 SING Y N 5 C1Y C10 "N1'" SING N N 6 C1Y C5 C4 DOUB Y N 7 C1Y C5 C6 SING Y N 8 C1Y N6 C6 SING N N 9 C1Y C4 N3 SING Y N 10 C1Y C6 N1 DOUB Y N 11 C1Y "N1'" "C1'" SING N N 12 C1Y "N1'" "C2'" SING N N 13 C1Y "C1'" "C4'" SING N N 14 C1Y N3 C2 DOUB Y N 15 C1Y N1 C2 SING Y N 16 C1Y "C2'" "C3'" SING N N 17 C1Y "C4'" C20 SING N N 18 C1Y "C4'" "C3'" SING N N 19 C1Y C21 C20 SING N N 20 C1Y C21 C22 SING N N 21 C1Y "O3'" "C3'" SING N N 22 C1Y C10 H1 SING N N 23 C1Y C10 H2 SING N N 24 C1Y C20 H3 SING N N 25 C1Y C20 H4 SING N N 26 C1Y C21 H5 SING N N 27 C1Y C21 H6 SING N N 28 C1Y C8 H7 SING N N 29 C1Y C22 H8 SING N N 30 C1Y C22 H9 SING N N 31 C1Y C22 H10 SING N N 32 C1Y "O3'" H11 SING N N 33 C1Y "C3'" H12 SING N N 34 C1Y "C2'" H13 SING N N 35 C1Y "C2'" H14 SING N N 36 C1Y "C1'" H16 SING N N 37 C1Y "C1'" H17 SING N N 38 C1Y "C4'" H18 SING N N 39 C1Y N7 H19 SING N N 40 C1Y N6 H20 SING N N 41 C1Y N6 H21 SING N N 42 C1Y C2 H22 SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C1Y SMILES ACDLabs 12.01 "c12ncnc(c1ncc2CN3CC(O)C(CCC)C3)N" C1Y InChI InChI 1.03 "InChI=1S/C14H21N5O/c1-2-3-9-5-19(7-11(9)20)6-10-4-16-13-12(10)17-8-18-14(13)15/h4,8-9,11,16,20H,2-3,5-7H2,1H3,(H2,15,17,18)/t9-,11-/m0/s1" C1Y InChIKey InChI 1.03 XCPKSVNKJHKGNS-ONGXEEELSA-N C1Y SMILES_CANONICAL CACTVS 3.385 "CCC[C@H]1CN(C[C@@H]1O)Cc2c[nH]c3c(N)ncnc23" C1Y SMILES CACTVS 3.385 "CCC[CH]1CN(C[CH]1O)Cc2c[nH]c3c(N)ncnc23" C1Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC[C@H]1CN(C[C@@H]1O)Cc2c[nH]c3c2ncnc3N" C1Y SMILES "OpenEye OEToolkits" 2.0.6 "CCCC1CN(CC1O)Cc2c[nH]c3c2ncnc3N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C1Y "SYSTEMATIC NAME" ACDLabs 12.01 "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-propylpyrrolidin-3-ol" C1Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(3~{R},4~{S})-1-[(4-azanyl-5~{H}-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-propyl-pyrrolidin-3-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C1Y "Create component" 2017-09-11 RCSB C1Y "Initial release" 2018-09-12 RCSB C1Y "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id C1Y _pdbx_chem_comp_synonyms.name "5'-deoxy-5'-Propyl-DADMe-Immucillin-A" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##