data_C5V # _chem_comp.id C5V _chem_comp.name "(1S,2S)-N-{4-[(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)methyl]phenyl}-2-(pyridin-3-yl)cyclopropane-1-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H19 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-09-13 _chem_comp.pdbx_modified_date 2018-09-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 397.426 _chem_comp.one_letter_code ? _chem_comp.three_letter_code C5V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6AZJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C5V C1 C1 C 0 1 N N N 0.223 -4.597 17.859 3.413 1.875 1.309 C1 C5V 1 C5V C2 C2 C 0 1 Y N N 1.740 -4.760 17.954 1.994 1.785 0.810 C2 C5V 2 C5V C3 C3 C 0 1 Y N N 2.529 -3.736 18.507 1.061 1.046 1.514 C3 C5V 3 C5V C11 C4 C 0 1 Y N N -0.617 -3.409 14.396 5.215 -1.252 0.426 C11 C5V 4 C5V C12 C5 C 0 1 Y N N -1.245 -2.430 15.178 5.548 -0.432 -0.671 C12 C5V 5 C5V C13 C6 C 0 1 N N N -0.965 -2.805 16.610 4.877 0.862 -0.428 C13 C5V 6 C5V C14 C7 C 0 1 Y N N -0.689 -3.398 12.991 5.696 -2.550 0.487 C14 C5V 7 C5V C15 C8 C 0 1 Y N N -1.423 -2.357 12.396 6.503 -3.033 -0.531 C15 C5V 8 C5V C16 C9 C 0 1 Y N N -2.043 -1.360 13.191 6.831 -2.228 -1.607 C16 C5V 9 C5V C17 C10 C 0 1 Y N N -1.974 -1.382 14.602 6.360 -0.927 -1.680 C17 C5V 10 C5V C20 C11 C 0 1 N N N 6.506 -5.296 19.694 -2.641 0.409 -0.376 C20 C5V 11 C5V C21 C12 C 0 1 N N S 7.914 -5.843 19.852 -4.096 0.360 -0.768 C21 C5V 12 C5V C23 C13 C 0 1 N N S 8.190 -6.463 21.251 -4.850 -0.949 -0.522 C23 C5V 13 C5V C24 C14 C 0 1 N N N 8.990 -5.235 20.775 -4.479 -0.535 -1.948 C24 C5V 14 C5V C25 C15 C 0 1 Y N N 8.833 -7.856 21.261 -6.300 -0.852 -0.124 C25 C5V 15 C5V C26 C16 C 0 1 Y N N 9.292 -8.392 22.479 -7.215 -0.241 -0.959 C26 C5V 16 C5V C28 C17 C 0 1 Y N N 9.923 -10.424 21.399 -8.933 -0.639 0.524 C28 C5V 17 C5V C29 C18 C 0 1 Y N N 9.464 -9.953 20.154 -8.076 -1.269 1.408 C29 C5V 18 C5V C30 C19 C 0 1 Y N N 8.898 -8.664 20.098 -6.733 -1.381 1.083 C30 C5V 19 C5V C4 C20 C 0 1 Y N N 3.919 -3.917 18.665 -0.241 0.962 1.060 C4 C5V 20 C5V C5 C21 C 0 1 Y N N 4.545 -5.105 18.229 -0.612 1.620 -0.106 C5 C5V 21 C5V C6 C22 C 0 1 Y N N 3.729 -6.135 17.723 0.328 2.361 -0.810 C6 C5V 22 C5V C7 C23 C 0 1 Y N N 2.345 -5.962 17.573 1.627 2.445 -0.348 C7 C5V 23 C5V N8 N1 N 0 1 N N N 5.911 -5.429 18.460 -1.929 1.537 -0.569 N8 C5V 24 C5V N9 N2 N 0 1 N N N -0.196 -3.926 16.635 4.203 0.784 0.734 N9 C5V 25 C5V C10 C24 C 0 1 N N N 0.043 -4.352 15.370 4.352 -0.429 1.298 C10 C5V 26 C5V O18 O1 O 0 1 N N N 0.708 -5.318 15.013 3.859 -0.787 2.349 O18 C5V 27 C5V O19 O2 O 0 1 N N N -1.406 -2.174 17.567 4.925 1.834 -1.155 O19 C5V 28 C5V O22 O3 O 0 1 N N N 5.959 -4.810 20.684 -2.112 -0.566 0.114 O22 C5V 29 C5V N27 N3 N 0 1 Y N N 9.834 -9.638 22.514 -8.486 -0.153 -0.617 N27 C5V 30 C5V H1 H1 H 0 1 N N N -0.122 -4.006 18.720 3.843 2.831 1.012 H1 C5V 31 C5V H2 H2 H 0 1 N N N -0.240 -5.594 17.890 3.422 1.795 2.397 H2 C5V 32 C5V H3 H3 H 0 1 N N N 2.069 -2.808 18.812 1.350 0.534 2.420 H3 C5V 33 C5V H4 H4 H 0 1 N N N -0.202 -4.156 12.396 5.444 -3.183 1.326 H4 C5V 34 C5V H5 H5 H 0 1 N N N -1.516 -2.316 11.321 6.879 -4.044 -0.484 H5 C5V 35 C5V H6 H6 H 0 1 N N N -2.583 -0.561 12.704 7.461 -2.616 -2.393 H6 C5V 36 C5V H7 H7 H 0 1 N N N -2.459 -0.629 15.206 6.619 -0.303 -2.523 H7 C5V 37 C5V H8 H8 H 0 1 N N N 8.299 -6.424 19.001 -4.648 1.291 -0.641 H8 C5V 38 C5V H9 H9 H 0 1 N N N 7.425 -6.275 22.019 -4.294 -1.774 -0.077 H9 C5V 39 C5V H10 H10 H 0 1 N N N 10.055 -5.340 20.519 -5.285 -0.193 -2.598 H10 C5V 40 C5V H11 H11 H 0 1 N N N 8.820 -4.254 21.244 -3.680 -1.088 -2.441 H11 C5V 41 C5V H12 H12 H 0 1 N N N 9.213 -7.812 23.387 -6.887 0.169 -1.902 H12 C5V 42 C5V H13 H13 H 0 1 N N N 10.349 -11.414 21.474 -9.980 -0.548 0.770 H13 C5V 43 C5V H14 H14 H 0 1 N N N 9.544 -10.563 19.266 -8.448 -1.664 2.341 H14 C5V 44 C5V H15 H15 H 0 1 N N N 8.511 -8.289 19.162 -6.041 -1.868 1.753 H15 C5V 45 C5V H16 H16 H 0 1 N N N 4.510 -3.139 19.124 -0.969 0.385 1.610 H16 C5V 46 C5V H17 H17 H 0 1 N N N 4.178 -7.077 17.445 0.043 2.874 -1.717 H17 C5V 47 C5V H18 H18 H 0 1 N N N 1.744 -6.760 17.162 2.358 3.021 -0.895 H18 C5V 48 C5V H19 H19 H 0 1 N N N 6.460 -5.767 17.696 -2.330 2.290 -1.030 H19 C5V 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C5V C15 C14 DOUB Y N 1 C5V C15 C16 SING Y N 2 C5V C14 C11 SING Y N 3 C5V C16 C17 DOUB Y N 4 C5V C11 C12 DOUB Y N 5 C5V C11 C10 SING N N 6 C5V C17 C12 SING Y N 7 C5V O18 C10 DOUB N N 8 C5V C12 C13 SING N N 9 C5V C10 N9 SING N N 10 C5V C13 N9 SING N N 11 C5V C13 O19 DOUB N N 12 C5V N9 C1 SING N N 13 C5V C7 C6 DOUB Y N 14 C5V C7 C2 SING Y N 15 C5V C6 C5 SING Y N 16 C5V C1 C2 SING N N 17 C5V C2 C3 DOUB Y N 18 C5V C5 N8 SING N N 19 C5V C5 C4 DOUB Y N 20 C5V N8 C20 SING N N 21 C5V C3 C4 SING Y N 22 C5V C20 C21 SING N N 23 C5V C20 O22 DOUB N N 24 C5V C21 C24 SING N N 25 C5V C21 C23 SING N N 26 C5V C30 C29 DOUB Y N 27 C5V C30 C25 SING Y N 28 C5V C29 C28 SING Y N 29 C5V C24 C23 SING N N 30 C5V C23 C25 SING N N 31 C5V C25 C26 DOUB Y N 32 C5V C28 N27 DOUB Y N 33 C5V C26 N27 SING Y N 34 C5V C1 H1 SING N N 35 C5V C1 H2 SING N N 36 C5V C3 H3 SING N N 37 C5V C14 H4 SING N N 38 C5V C15 H5 SING N N 39 C5V C16 H6 SING N N 40 C5V C17 H7 SING N N 41 C5V C21 H8 SING N N 42 C5V C23 H9 SING N N 43 C5V C24 H10 SING N N 44 C5V C24 H11 SING N N 45 C5V C26 H12 SING N N 46 C5V C28 H13 SING N N 47 C5V C29 H14 SING N N 48 C5V C30 H15 SING N N 49 C5V C4 H16 SING N N 50 C5V C6 H17 SING N N 51 C5V C7 H18 SING N N 52 C5V N8 H19 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C5V SMILES ACDLabs 12.01 "C(c3ccc(NC(C1CC1c2cnccc2)=O)cc3)N4C(c5c(C4=O)cccc5)=O" C5V InChI InChI 1.03 "InChI=1S/C24H19N3O3/c28-22(21-12-20(21)16-4-3-11-25-13-16)26-17-9-7-15(8-10-17)14-27-23(29)18-5-1-2-6-19(18)24(27)30/h1-11,13,20-21H,12,14H2,(H,26,28)/t20-,21+/m1/s1" C5V InChIKey InChI 1.03 ZFFWKXDUNGUFER-RTWAWAEBSA-N C5V SMILES_CANONICAL CACTVS 3.385 "O=C(Nc1ccc(CN2C(=O)c3ccccc3C2=O)cc1)[C@H]4C[C@@H]4c5cccnc5" C5V SMILES CACTVS 3.385 "O=C(Nc1ccc(CN2C(=O)c3ccccc3C2=O)cc1)[CH]4C[CH]4c5cccnc5" C5V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc2c(c1)C(=O)N(C2=O)Cc3ccc(cc3)NC(=O)[C@H]4C[C@@H]4c5cccnc5" C5V SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc2c(c1)C(=O)N(C2=O)Cc3ccc(cc3)NC(=O)C4CC4c5cccnc5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C5V "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-N-{4-[(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)methyl]phenyl}-2-(pyridin-3-yl)cyclopropane-1-carboxamide" C5V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(1~{S},2~{S})-~{N}-[4-[[1,3-bis(oxidanylidene)isoindol-2-yl]methyl]phenyl]-2-pyridin-3-yl-cyclopropane-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C5V "Create component" 2017-09-13 RCSB C5V "Initial release" 2018-09-12 RCSB #