data_C66 # _chem_comp.id C66 _chem_comp.name 2-AMINOETHYLLYSINE-CARBONYLMETHYLENE-CYTOSINE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C14 H24 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-02-19 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 340.378 _chem_comp.one_letter_code X _chem_comp.three_letter_code C66 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C66 "C8'" "C8'" C 0 1 N N N 15.719 5.772 22.902 2.663 -1.426 -0.504 "C8'" C66 1 C66 "C7'" "C7'" C 0 1 N N N 16.578 6.291 24.082 2.182 -0.008 -0.756 "C7'" C66 2 C66 "O7'" "O7'" O 0 1 N N N 16.034 6.626 25.138 2.484 0.908 0.014 "O7'" C66 3 C66 "C5'" "C5'" C 0 1 N N R 18.722 6.911 25.185 0.859 1.484 -2.252 "C5'" C66 4 C66 "C'" "C'" C 0 1 N N N 18.930 8.426 25.189 -0.087 1.884 -1.136 "C'" C66 5 C66 "O1'" "O1'" O 0 1 N N N 19.538 8.974 26.126 -0.660 1.107 -0.383 "O1'" C66 6 C66 OXT OXT O 0 1 N Y N ? ? ? -0.276 3.229 -1.090 OXT C66 7 C66 "N4'" "N4'" N 0 1 N N N 17.929 6.393 23.983 1.383 0.189 -1.898 "N4'" C66 8 C66 "C3'" "C3'" C 0 1 N N N 18.659 6.057 22.739 1.032 -0.912 -2.804 "C3'" C66 9 C66 "C2'" "C2'" C 0 1 N N N 19.570 4.869 22.723 -0.260 -1.598 -2.392 "C2'" C66 10 C66 "N1'" "N1'" N 0 1 N N N 18.803 3.602 22.756 -0.596 -2.691 -3.265 "N1'" C66 11 C66 N1 N1 N 0 1 N N N 14.318 5.791 23.350 3.432 -1.475 0.706 N1 C66 12 C66 C2 C2 C 0 1 N N N 13.559 6.913 23.089 4.837 -1.273 0.715 C2 C66 13 C66 N3 N3 N 0 1 N N N 12.260 6.967 23.477 5.514 -1.336 1.920 N3 C66 14 C66 C4 C4 C 0 1 N N N 11.765 5.909 24.118 4.882 -1.576 3.039 C4 C66 15 C66 C5 C5 C 0 1 N N N 12.479 4.725 24.433 3.412 -1.793 3.072 C5 C66 16 C66 C6 C6 C 0 1 N N N 13.769 4.712 24.021 2.778 -1.730 1.903 C6 C66 17 C66 O2 O2 O 0 1 N N N 14.043 7.886 22.498 5.449 -1.046 -0.330 O2 C66 18 C66 N4 N4 N 0 1 N N N 10.522 6.047 24.455 5.574 -1.634 4.226 N4 C66 19 C66 CB CB C 0 1 N N N 18.366 6.374 26.606 1.959 2.534 -2.413 CB C66 20 C66 CG CG C 0 1 N N N 18.073 4.876 26.747 2.998 2.211 -3.494 CG C66 21 C66 CD CD C 0 1 N N N 17.454 4.557 28.115 4.115 3.257 -3.592 CD C66 22 C66 CE CE C 0 1 N N N 18.028 3.254 28.683 5.115 2.960 -4.711 CE C66 23 C66 NZ NZ N 0 1 N N N 17.631 3.031 30.104 6.144 3.988 -4.809 NZ C66 24 C66 "H8'1" "1H8'" H 0 0 N N N 16.024 4.755 22.613 1.812 -2.100 -0.382 "H8'1" C66 25 C66 "H8'2" "2H8'" H 0 0 N N N 15.847 6.420 22.022 3.310 -1.759 -1.320 "H8'2" C66 26 C66 "H5'1" "1H5'" H 0 0 N N N 19.687 6.424 24.983 0.284 1.340 -3.171 "H5'1" C66 27 C66 HXT HXT H 0 1 N Y N 0.129 0.941 0.003 -0.908 3.540 -0.408 HXT C66 28 C66 "H3'1" "1H3'" H 0 0 N N N 19.333 6.913 22.586 1.863 -1.624 -2.781 "H3'1" C66 29 C66 "H3'2" "2H3'" H 0 0 N N N 17.893 5.870 21.972 0.958 -0.497 -3.814 "H3'2" C66 30 C66 "H2'1" "1H2'" H 0 0 N N N 20.212 4.911 23.615 -1.103 -0.901 -2.401 "H2'1" C66 31 C66 "H2'2" "2H2'" H 0 0 N N N 20.173 4.896 21.804 -0.161 -2.012 -1.383 "H2'2" C66 32 C66 "H1'1" "1H1'" H 0 0 N N N 18.237 3.577 23.580 -0.739 -3.607 -2.872 "H1'1" C66 33 C66 "H1'2" "2H1'" H 0 0 N N N 19.437 2.828 22.763 -0.486 -2.576 -4.260 "H1'2" C66 34 C66 H5 H5 H 0 1 N N N 12.029 3.897 24.961 2.907 -1.991 4.008 H5 C66 35 C66 H6 H6 H 0 1 N N N 14.380 3.844 24.220 1.706 -1.876 1.836 H6 C66 36 C66 HN41 1HN4 H 0 0 N N N 9.985 5.359 24.943 5.887 -0.782 4.625 HN41 C66 37 C66 HN42 2HN4 H 0 0 N N N 10.174 6.937 24.160 5.731 -2.525 4.631 HN42 C66 38 C66 HB1 1HB H 0 1 N N N 17.422 6.874 26.870 1.504 3.503 -2.657 HB1 C66 39 C66 HB2 2HB H 0 1 N N N 19.227 6.593 27.254 2.475 2.676 -1.455 HB2 C66 40 C66 HG1 1HG H 0 1 N N N 19.021 4.325 26.656 2.477 2.156 -4.458 HG1 C66 41 C66 HG2 2HG H 0 1 N N N 17.368 4.575 25.958 3.424 1.218 -3.312 HG2 C66 42 C66 HD1 1HD H 0 1 N N N 16.367 4.440 27.992 4.651 3.327 -2.638 HD1 C66 43 C66 HD2 2HD H 0 1 N N N 17.677 5.380 28.810 3.670 4.242 -3.779 HD2 C66 44 C66 HE1 1HE H 0 1 N N N 19.125 3.324 28.646 5.591 1.988 -4.541 HE1 C66 45 C66 HE2 2HE H 0 1 N N N 17.653 2.414 28.079 4.580 2.899 -5.665 HE2 C66 46 C66 HZ1 1HZ H 0 1 N N N 17.055 3.789 30.412 5.859 4.925 -4.999 HZ1 C66 47 C66 HZ2 2HZ H 0 1 N N N 18.450 2.981 30.676 7.096 3.696 -4.886 HZ2 C66 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C66 "C8'" "C7'" SING N N 1 C66 "C8'" N1 SING N N 2 C66 "C8'" "H8'1" SING N N 3 C66 "C8'" "H8'2" SING N N 4 C66 "C7'" "O7'" DOUB N N 5 C66 "C7'" "N4'" SING N N 6 C66 "C5'" "C'" SING N N 7 C66 "C5'" "N4'" SING N N 8 C66 "C5'" CB SING N N 9 C66 "C5'" "H5'1" SING N N 10 C66 "C'" "O1'" DOUB N N 11 C66 "C'" OXT SING N N 12 C66 OXT HXT SING N N 13 C66 "N4'" "C3'" SING N N 14 C66 "C3'" "C2'" SING N N 15 C66 "C3'" "H3'1" SING N N 16 C66 "C3'" "H3'2" SING N N 17 C66 "C2'" "N1'" SING N N 18 C66 "C2'" "H2'1" SING N N 19 C66 "C2'" "H2'2" SING N N 20 C66 "N1'" "H1'1" SING N N 21 C66 "N1'" "H1'2" SING N N 22 C66 N1 C2 SING N N 23 C66 N1 C6 SING N N 24 C66 C2 N3 SING N N 25 C66 C2 O2 DOUB N N 26 C66 N3 C4 DOUB N N 27 C66 C4 C5 SING N N 28 C66 C4 N4 SING N N 29 C66 C5 C6 DOUB N N 30 C66 C5 H5 SING N N 31 C66 C6 H6 SING N N 32 C66 N4 HN41 SING N N 33 C66 N4 HN42 SING N N 34 C66 CB CG SING N N 35 C66 CB HB1 SING N N 36 C66 CB HB2 SING N N 37 C66 CG CD SING N N 38 C66 CG HG1 SING N N 39 C66 CG HG2 SING N N 40 C66 CD CE SING N N 41 C66 CD HD1 SING N N 42 C66 CD HD2 SING N N 43 C66 CE NZ SING N N 44 C66 CE HE1 SING N N 45 C66 CE HE2 SING N N 46 C66 NZ HZ1 SING N N 47 C66 NZ HZ2 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C66 SMILES ACDLabs 10.04 "O=C1N=C(C=CN1CC(=O)N(C(C(=O)O)CCCCN)CCN)N" C66 SMILES_CANONICAL CACTVS 3.341 "NCCCC[C@@H](N(CCN)C(=O)CN1C=CC(=NC1=O)N)C(O)=O" C66 SMILES CACTVS 3.341 "NCCCC[CH](N(CCN)C(=O)CN1C=CC(=NC1=O)N)C(O)=O" C66 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)CC(=O)N(CCN)[C@H](CCCCN)C(=O)O" C66 SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)CC(=O)N(CCN)C(CCCCN)C(=O)O" C66 InChI InChI 1.03 "InChI=1S/C14H24N6O4/c15-5-2-1-3-10(13(22)23)20(8-6-16)12(21)9-19-7-4-11(17)18-14(19)24/h4,7,10H,1-3,5-6,8-9,15-16H2,(H,22,23)(H2,17,18,24)/t10-/m1/s1" C66 InChIKey InChI 1.03 VSVRCXCSVDYVFE-SNVBAGLBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C66 "SYSTEMATIC NAME" ACDLabs 10.04 "N~2~-(2-aminoethyl)-N~2~-[(4-amino-2-oxopyrimidin-1(2H)-yl)acetyl]-D-lysine" C66 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-6-amino-2-[2-aminoethyl-[2-(4-amino-2-oxo-pyrimidin-1-yl)ethanoyl]amino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C66 "Create component" 2003-02-19 RCSB C66 "Modify descriptor" 2011-06-04 RCSB #