data_C6M # _chem_comp.id C6M _chem_comp.name "2-(2,2-diphosphonoethyl)-1-propylpyridin-1-ium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H18 N O6 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2017-09-14 _chem_comp.pdbx_modified_date 2024-04-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 310.201 _chem_comp.one_letter_code ? _chem_comp.three_letter_code C6M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6B07 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C6M OAN O1 O 0 1 N N N N N N 40.921 17.591 9.922 0.183 -2.422 0.897 OAN C6M 1 C6M PAL P1 P 0 1 N N N N N N 41.256 16.804 11.225 1.234 -1.613 0.241 PAL C6M 2 C6M OAO O2 O 0 1 N N N N N N 39.957 15.999 11.538 2.628 -1.806 1.024 OAO C6M 3 C6M OAM O3 O 0 1 N N N N N N 42.476 15.940 11.324 1.406 -2.094 -1.286 OAM C6M 4 C6M CAK C1 C 0 1 N N N N N N 41.294 17.999 12.623 0.757 0.146 0.274 CAK C6M 5 C6M PAP P2 P 0 1 N N N N N N 39.744 18.929 12.707 2.216 1.179 -0.086 PAP C6M 6 C6M OAR O4 O 0 1 N N N N N N 38.534 17.998 13.108 3.350 0.910 1.024 OAR C6M 7 C6M OAS O5 O 0 1 N N N N N N 39.247 19.599 11.385 2.744 0.836 -1.425 OAS C6M 8 C6M OAQ O6 O 0 1 N N N N N N 40.015 20.040 13.733 1.794 2.732 -0.056 OAQ C6M 9 C6M CAJ C2 C 0 1 N N N N N N 42.459 19.083 12.595 -0.322 0.402 -0.781 CAJ C6M 10 C6M CAF C3 C 0 1 Y N N N N N 43.763 18.606 12.304 -1.565 -0.372 -0.426 CAF C6M 11 C6M CAE C4 C 0 1 Y N N N N N 44.425 19.136 11.214 -1.708 -1.675 -0.867 CAE C6M 12 C6M CAD C5 C 0 1 Y N N N N N 45.691 18.759 10.846 -2.855 -2.378 -0.535 CAD C6M 13 C6M CAC C6 C 0 1 Y N N N N N 46.344 17.792 11.542 -3.821 -1.742 0.231 CAC C6M 14 C6M CAB C7 C 0 1 Y N N N N N 45.731 17.275 12.653 -3.608 -0.438 0.636 CAB C6M 15 C6M NAA N1 N 1 1 Y N N N N N 44.469 17.683 13.009 -2.501 0.199 0.306 NAA C6M 16 C6M CAG C8 C 0 1 N N N N N N 43.891 17.023 14.146 -2.310 1.579 0.759 CAG C6M 17 C6M CAH C9 C 0 1 N N N N N N 44.541 17.434 15.426 -2.683 2.542 -0.370 CAH C6M 18 C6M CAI C10 C 0 1 N N N N N N 43.608 16.887 16.573 -2.364 3.976 0.058 CAI C6M 19 C6M H1 H1 H 0 1 N N N N N N 39.302 16.183 10.875 3.363 -1.303 0.648 H1 C6M 20 C6M H2 H2 H 0 1 N N N N N N 42.954 15.971 10.504 1.734 -2.999 -1.379 H2 C6M 21 C6M H3 H3 H 0 1 N N N N N N 41.366 17.406 13.547 0.367 0.398 1.260 H3 C6M 22 C6M H4 H4 H 0 1 N N N N N N 37.841 18.083 12.464 4.157 1.427 0.895 H4 C6M 23 C6M H5 H5 H 0 1 N N N N N N 39.823 20.885 13.344 1.438 3.027 0.793 H5 C6M 24 C6M H6 H6 H 0 1 N N N N N N 42.492 19.563 13.584 -0.553 1.466 -0.813 H6 C6M 25 C6M H7 H7 H 0 1 N N N N N N 42.200 19.832 11.832 0.041 0.079 -1.757 H7 C6M 26 C6M H8 H8 H 0 1 N N N N N N 43.920 19.885 10.622 -0.935 -2.138 -1.462 H8 C6M 27 C6M H9 H9 H 0 1 N N N N N N 46.170 19.232 10.001 -2.994 -3.397 -0.865 H9 C6M 28 C6M H10 H10 H 0 1 N N N N N N 47.316 17.442 11.229 -4.727 -2.260 0.508 H10 C6M 29 C6M H11 H11 H 0 1 N N N N N N 46.245 16.540 13.254 -4.355 0.064 1.233 H11 C6M 30 C6M H12 H12 H 0 1 N N N N N N 42.821 17.274 14.195 -2.947 1.768 1.623 H12 C6M 31 C6M H13 H13 H 0 1 N N N N N N 44.008 15.936 14.022 -1.267 1.729 1.036 H13 C6M 32 C6M H14 H14 H 0 1 N N N N N N 45.545 16.992 15.505 -2.110 2.293 -1.263 H14 C6M 33 C6M H15 H15 H 0 1 N N N N N N 44.617 18.530 15.483 -3.748 2.455 -0.585 H15 C6M 34 C6M H16 H16 H 0 1 N N N N N N 44.032 17.157 17.551 -2.870 4.196 0.998 H16 C6M 35 C6M H17 H17 H 0 1 N N N N N N 42.606 17.330 16.473 -1.287 4.085 0.190 H17 C6M 36 C6M H18 H18 H 0 1 N N N N N N 43.535 15.792 16.495 -2.707 4.669 -0.711 H18 C6M 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C6M OAN PAL DOUB N N 1 C6M CAD CAE DOUB Y N 2 C6M CAD CAC SING Y N 3 C6M CAE CAF SING Y N 4 C6M PAL OAM SING N N 5 C6M PAL OAO SING N N 6 C6M PAL CAK SING N N 7 C6M OAS PAP DOUB N N 8 C6M CAC CAB DOUB Y N 9 C6M CAF CAJ SING N N 10 C6M CAF NAA DOUB Y N 11 C6M CAJ CAK SING N N 12 C6M CAK PAP SING N N 13 C6M CAB NAA SING Y N 14 C6M PAP OAR SING N N 15 C6M PAP OAQ SING N N 16 C6M NAA CAG SING N N 17 C6M CAG CAH SING N N 18 C6M CAH CAI SING N N 19 C6M OAO H1 SING N N 20 C6M OAM H2 SING N N 21 C6M CAK H3 SING N N 22 C6M OAR H4 SING N N 23 C6M OAQ H5 SING N N 24 C6M CAJ H6 SING N N 25 C6M CAJ H7 SING N N 26 C6M CAE H8 SING N N 27 C6M CAD H9 SING N N 28 C6M CAC H10 SING N N 29 C6M CAB H11 SING N N 30 C6M CAG H12 SING N N 31 C6M CAG H13 SING N N 32 C6M CAH H14 SING N N 33 C6M CAH H15 SING N N 34 C6M CAI H16 SING N N 35 C6M CAI H17 SING N N 36 C6M CAI H18 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C6M SMILES ACDLabs 12.01 "O=P(O)(O)C(Cc1cccc[n+]1CCC)P(=O)(O)O" C6M InChI InChI 1.06 "InChI=1S/C10H17NO6P2/c1-2-6-11-7-4-3-5-9(11)8-10(18(12,13)14)19(15,16)17/h3-5,7,10H,2,6,8H2,1H3,(H3-,12,13,14,15,16,17)/p+1" C6M InChIKey InChI 1.06 KNULKELAVSFYBS-UHFFFAOYSA-O C6M SMILES_CANONICAL CACTVS 3.385 "CCC[n+]1ccccc1CC([P](O)(O)=O)[P](O)(O)=O" C6M SMILES CACTVS 3.385 "CCC[n+]1ccccc1CC([P](O)(O)=O)[P](O)(O)=O" C6M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC[n+]1ccccc1CC(P(=O)(O)O)P(=O)(O)O" C6M SMILES "OpenEye OEToolkits" 2.0.7 "CCC[n+]1ccccc1CC(P(=O)(O)O)P(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C6M "SYSTEMATIC NAME" ACDLabs 12.01 "2-(2,2-diphosphonoethyl)-1-propylpyridin-1-ium" C6M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[1-phosphono-2-(1-propylpyridin-1-ium-2-yl)ethyl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C6M "Create component" 2017-09-14 RCSB C6M "Initial release" 2017-12-13 RCSB C6M "Modify charge" 2024-04-25 RCSB #