data_C99 # _chem_comp.id C99 _chem_comp.name "{(2R)-2-[(1S,2R)-1-AMINO-2-HYDROXYPROPYL]-2-HYDROXY-4,5-DIOXOIMIDAZOLIDIN-1-YL}ACETIC ACID" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C8 H13 N3 O6" _chem_comp.mon_nstd_parent_comp_id "THR, PHE, GLY" _chem_comp.pdbx_synonyms "CHROMOPHORE (THR-PHE-GLY)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-03-23 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 247.205 _chem_comp.one_letter_code TFG _chem_comp.three_letter_code C99 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2HCG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C99 N1 N1 N 0 1 N N N Y Y N 1.727 4.053 1.374 -1.692 -0.230 1.694 N1 C99 1 C99 CA1 CA1 C 0 1 N N S Y N N 0.762 5.140 1.756 -1.343 -0.984 0.483 CA1 C99 2 C99 CB1 CB1 C 0 1 N N R N N N -0.102 5.399 0.563 -2.615 -1.291 -0.310 CB1 C99 3 C99 CG1 CG1 C 0 1 N N N N N N 0.724 5.829 -0.636 -3.616 -2.015 0.592 CG1 C99 4 C99 OG1 OG1 O 0 1 N N N N N N -0.977 4.384 0.115 -3.191 -0.070 -0.778 OG1 C99 5 C99 C1 C1 C 0 1 N N R Y N N -0.077 4.863 2.968 -0.392 -0.152 -0.380 C1 C99 6 C99 O1 O1 O 0 1 N N N N N N -0.699 6.248 3.118 -0.054 -0.874 -1.566 O1 C99 7 C99 N2 N2 N 0 1 N N N Y N N -1.088 3.891 3.098 -1.026 1.122 -0.735 N2 C99 8 C99 N3 N3 N 0 1 N N N Y N N 0.720 4.603 4.137 0.822 0.166 0.379 N3 C99 9 C99 C2 C2 C 0 1 N N N Y N N 0.027 3.866 5.124 0.907 1.508 0.471 C2 C99 10 C99 O2 O2 O 0 1 N N N Y N N 0.289 3.640 6.244 1.789 2.123 1.034 O2 C99 11 C99 CA2 CA2 C 0 1 N N N Y N N -1.102 3.465 4.351 -0.261 2.112 -0.234 CA2 C99 12 C99 CA3 CA3 C 0 1 N N N Y N N 1.965 5.162 4.557 1.770 -0.800 0.938 CA3 C99 13 C99 C3 C3 C 0 1 N N N Y N Y 2.119 6.586 5.131 2.842 -1.098 -0.079 C3 C99 14 C99 O3 O3 O 0 1 N N N Y N Y 3.003 6.885 5.873 2.816 -0.558 -1.159 O3 C99 15 C99 O4 O4 O 0 1 N N N N N N -2.079 2.754 4.785 -0.486 3.300 -0.339 O4 C99 16 C99 OXT OXT O 0 1 N Y N Y N Y 1.172 7.406 4.627 3.825 -1.963 0.216 OXT C99 17 C99 H HN11 H 0 0 N N N Y Y N 1.941 4.124 0.400 -2.145 0.641 1.461 HN11 C99 18 C99 H2 HN12 H 0 0 N Y N Y Y N 2.567 4.150 1.908 -2.267 -0.783 2.312 HN12 C99 19 C99 HA1 HA1 H 0 1 N N N Y N N 1.355 6.020 2.048 -0.856 -1.918 0.764 HA1 C99 20 C99 HB1 HB1 H 0 1 N N N N N N -0.754 6.189 0.964 -2.368 -1.926 -1.162 HB1 C99 21 C99 HG11 HG11 H 0 0 N N N N N N 0.070 5.933 -1.514 -3.863 -1.380 1.443 HG11 C99 22 C99 HG12 HG12 H 0 0 N N N N N N 1.206 6.794 -0.422 -4.522 -2.234 0.026 HG12 C99 23 C99 HG13 HG13 H 0 0 N N N N N N 1.495 5.071 -0.841 -3.177 -2.947 0.948 HG13 C99 24 C99 HOG1 HOG1 H 0 0 N N N N N N -1.173 4.518 -0.805 -3.436 0.545 -0.073 HOG1 C99 25 C99 HO1 HO1 H 0 1 N N N N N N -0.828 6.439 4.039 0.548 -0.400 -2.156 HO1 C99 26 C99 HN2 HN2 H 0 1 N N N Y N N -1.693 3.576 2.367 -1.847 1.232 -1.239 HN2 C99 27 C99 HA31 HA31 H 0 0 N N N Y N N 2.320 4.495 5.356 2.226 -0.384 1.836 HA31 C99 28 C99 HA32 HA32 H 0 0 N N N Y N N 2.500 5.252 3.600 1.244 -1.721 1.191 HA32 C99 29 C99 HXT HXT H 0 1 N Y N Y N Y 1.309 8.287 4.955 4.490 -2.121 -0.468 HXT C99 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C99 N1 CA1 SING N N 1 C99 N1 H SING N N 2 C99 N1 H2 SING N N 3 C99 CA1 CB1 SING N N 4 C99 CA1 C1 SING N N 5 C99 CA1 HA1 SING N N 6 C99 CB1 CG1 SING N N 7 C99 CB1 OG1 SING N N 8 C99 CB1 HB1 SING N N 9 C99 CG1 HG11 SING N N 10 C99 CG1 HG12 SING N N 11 C99 CG1 HG13 SING N N 12 C99 OG1 HOG1 SING N N 13 C99 C1 N2 SING N N 14 C99 C1 O1 SING N N 15 C99 C1 N3 SING N N 16 C99 O1 HO1 SING N N 17 C99 N2 CA2 SING N N 18 C99 N2 HN2 SING N N 19 C99 N3 CA3 SING N N 20 C99 N3 C2 SING N N 21 C99 C2 CA2 SING N N 22 C99 C2 O2 DOUB N N 23 C99 CA2 O4 DOUB N N 24 C99 CA3 C3 SING N N 25 C99 CA3 HA31 SING N N 26 C99 CA3 HA32 SING N N 27 C99 C3 OXT SING N N 28 C99 C3 O3 DOUB N N 29 C99 OXT HXT SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C99 SMILES ACDLabs 10.04 "O=C(O)CN1C(=O)C(=O)NC1(O)C(N)C(O)C" C99 SMILES_CANONICAL CACTVS 3.341 "C[C@@H](O)[C@H](N)[C@@]1(O)NC(=O)C(=O)N1CC(O)=O" C99 SMILES CACTVS 3.341 "C[CH](O)[CH](N)[C]1(O)NC(=O)C(=O)N1CC(O)=O" C99 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]([C@@H]([C@]1(NC(=O)C(=O)N1CC(=O)O)O)N)O" C99 SMILES "OpenEye OEToolkits" 1.5.0 "CC(C(C1(NC(=O)C(=O)N1CC(=O)O)O)N)O" C99 InChI InChI 1.03 "InChI=1S/C8H13N3O6/c1-3(12)5(9)8(17)10-6(15)7(16)11(8)2-4(13)14/h3,5,12,17H,2,9H2,1H3,(H,10,15)(H,13,14)/t3-,5+,8-/m1/s1" C99 InChIKey InChI 1.03 QYFXMTPKEZLAPH-UWBRJAPDSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C99 "SYSTEMATIC NAME" ACDLabs 10.04 "{(2R)-2-[(1S,2R)-1-amino-2-hydroxypropyl]-2-hydroxy-4,5-dioxoimidazolidin-1-yl}acetic acid" C99 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[(2R)-2-[(1S,2R)-1-amino-2-hydroxy-propyl]-2-hydroxy-4,5-dioxo-imidazolidin-1-yl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C99 "Create component" 2007-03-23 RCSB C99 "Modify descriptor" 2011-06-04 RCSB C99 "Modify synonyms" 2020-06-05 PDBE C99 "Modify backbone" 2023-11-03 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id C99 _pdbx_chem_comp_synonyms.name "CHROMOPHORE (THR-PHE-GLY)" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #