data_CBD # _chem_comp.id CBD _chem_comp.name "CIBACRON BLUE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H20 Cl N7 O11 S3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 774.157 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CBD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1QRD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CBD C1 C1 C 0 1 Y N N 26.802 8.647 5.497 1.596 -1.663 4.687 C1 CBD 1 CBD SA SA S 0 1 N N N 27.274 8.744 7.188 2.740 -2.954 4.328 SA CBD 2 CBD O1A O1A O 0 1 N N N 26.837 10.074 7.707 2.376 -3.446 3.045 O1A CBD 3 CBD O2A O2A O 0 1 N N N 28.733 8.550 7.194 4.019 -2.447 4.682 O2A CBD 4 CBD O3A O3A O 0 1 N N N 26.369 7.750 7.838 2.462 -4.092 5.301 O3A CBD 5 CBD C2 C2 C 0 1 Y N N 27.573 9.320 4.523 1.880 -0.752 5.710 C2 CBD 6 CBD N2 N2 N 0 1 N N N 28.832 10.035 5.047 3.054 -0.866 6.437 N2 CBD 7 CBD C3 C3 C 0 1 Y N N 26.996 9.471 3.225 0.972 0.269 6.000 C3 CBD 8 CBD C4 C4 C 0 1 N N N 27.645 10.218 2.143 1.252 1.243 7.068 C4 CBD 9 CBD O4 O4 O 0 1 N N N 28.689 10.816 2.447 2.365 1.326 7.550 O4 CBD 10 CBD C5 C5 C 0 1 Y N N 27.199 10.260 0.744 0.160 2.117 7.550 C5 CBD 11 CBD C6 C6 C 0 1 Y N N 27.889 10.959 -0.284 0.299 2.838 8.732 C6 CBD 12 CBD C7 C7 C 0 1 Y N N 27.323 10.994 -1.567 -0.733 3.648 9.169 C7 CBD 13 CBD C8 C8 C 0 1 Y N N 26.095 10.382 -1.860 -1.904 3.747 8.439 C8 CBD 14 CBD C9 C9 C 0 1 Y N N 25.409 9.705 -0.860 -2.058 3.038 7.261 C9 CBD 15 CBD C10 C10 C 0 1 Y N N 25.966 9.652 0.443 -1.030 2.219 6.807 C10 CBD 16 CBD C11 C11 C 0 1 N N N 25.378 8.884 1.495 -1.176 1.453 5.550 C11 CBD 17 CBD O11 O11 O 0 1 N N N 24.293 8.408 1.209 -2.077 1.711 4.774 O11 CBD 18 CBD C12 C12 C 0 1 Y N N 25.816 8.763 2.887 -0.219 0.376 5.250 C12 CBD 19 CBD C13 C13 C 0 1 Y N N 25.044 8.157 3.922 -0.479 -0.546 4.232 C13 CBD 20 CBD C14 C14 C 0 1 Y N N 25.524 8.122 5.236 0.444 -1.562 3.965 C14 CBD 21 CBD NB NB N 0 1 N N N 23.789 7.425 3.626 -1.646 -0.455 3.491 NB CBD 22 CBD CB1 CB1 C 0 1 Y N N 23.298 4.367 5.837 -2.753 -0.948 0.020 CB1 CBD 23 CBD SB SB S 0 1 N N N 24.202 3.066 6.641 -4.251 -1.154 -0.883 SB CBD 24 CBD O1B O1B O 0 1 N N N 23.828 3.058 8.113 -5.289 -0.728 -0.011 O1B CBD 25 CBD O2B O2B O 0 1 N N N 25.615 3.290 6.272 -3.996 -0.627 -2.177 O2B CBD 26 CBD O3B O3B O 0 1 N N N 23.693 1.864 5.895 -4.463 -2.648 -1.078 O3B CBD 27 CBD CB2 CB2 C 0 1 Y N N 21.917 4.489 6.117 -1.534 -0.951 -0.645 CB2 CBD 28 CBD CB3 CB3 C 0 1 Y N N 21.195 5.556 5.537 -0.353 -0.790 0.067 CB3 CBD 29 CBD CB4 CB4 C 0 1 Y N N 21.822 6.480 4.725 -0.390 -0.625 1.437 CB4 CBD 30 CBD CB5 CB5 C 0 1 Y N N 23.196 6.346 4.430 -1.609 -0.621 2.103 CB5 CBD 31 CBD CB6 CB6 C 0 1 Y N N 23.956 5.275 4.970 -2.790 -0.788 1.391 CB6 CBD 32 CBD NC NC N 0 1 N N N 21.388 3.466 7.025 -1.496 -1.118 -2.035 NC CBD 33 CBD NC1 NC1 N 0 1 Y N N 19.016 3.806 6.315 0.142 0.554 -2.222 NC1 CBD 34 CBD CC2 CC2 C 0 1 Y N N 17.690 3.483 6.297 0.999 1.252 -2.948 CC2 CBD 35 CBD CL CL CL 0 0 N N N 16.528 4.401 5.147 1.968 2.482 -2.199 CL CBD 36 CBD NC3 NC3 N 0 1 Y N N 17.368 2.397 7.094 1.120 1.014 -4.244 NC3 CBD 37 CBD CC4 CC4 C 0 1 Y N N 18.299 1.688 7.823 0.379 0.071 -4.821 CC4 CBD 38 CBD NC5 NC5 N 0 1 Y N N 19.592 2.057 7.784 -0.479 -0.634 -4.094 NC5 CBD 39 CBD CC6 CC6 C 0 1 Y N N 19.958 3.119 7.035 -0.602 -0.390 -2.793 CC6 CBD 40 CBD ND ND N 0 1 N N N 17.949 0.492 8.613 0.507 -0.176 -6.174 ND CBD 41 CBD CD1 CD1 C 0 1 Y N N 18.634 -1.673 9.494 1.280 0.734 -8.272 CD1 CBD 42 CBD SD SD S 0 1 N N N 17.320 -2.373 8.479 -0.206 0.199 -9.051 SD CBD 43 CBD O1D O1D O 0 1 N N N 17.824 -2.374 7.059 -1.180 0.132 -8.019 O1D CBD 44 CBD O2D O2D O 0 1 N N N 16.085 -1.586 8.813 -0.318 0.970 -10.239 O2D CBD 45 CBD O3D O3D O 0 1 N N N 17.069 -3.811 8.803 0.010 -1.235 -9.509 O3D CBD 46 CBD CD2 CD2 C 0 1 Y N N 18.880 -0.275 9.437 1.482 0.494 -6.919 CD2 CBD 47 CBD CD3 CD3 C 0 1 Y N N 19.926 0.256 10.236 2.655 0.918 -6.309 CD3 CBD 48 CBD CD4 CD4 C 0 1 Y N N 20.712 -0.564 11.053 3.616 1.580 -7.047 CD4 CBD 49 CBD CD5 CD5 C 0 1 Y N N 20.485 -1.939 11.110 3.409 1.823 -8.393 CD5 CBD 50 CBD CD6 CD6 C 0 1 Y N N 19.460 -2.496 10.347 2.242 1.403 -9.004 CD6 CBD 51 CBD HOA3 3HOA H 0 0 N N N 26.624 7.802 8.751 3.094 -4.795 5.096 HOA3 CBD 52 CBD HN21 1HN2 H 0 0 N N N 29.388 10.520 4.343 3.493 -0.070 6.777 HN21 CBD 53 CBD HN22 2HN2 H 0 0 N N N 29.417 9.376 5.561 3.435 -1.741 6.609 HN22 CBD 54 CBD H6 H6 H 0 1 N N N 28.848 11.466 -0.089 1.211 2.765 9.306 H6 CBD 55 CBD H7 H7 H 0 1 N N N 27.861 11.520 -2.372 -0.624 4.207 10.087 H7 CBD 56 CBD H8 H8 H 0 1 N N N 25.669 10.433 -2.876 -2.702 4.383 8.791 H8 CBD 57 CBD H9 H9 H 0 1 N N N 24.445 9.221 -1.094 -2.975 3.121 6.696 H9 CBD 58 CBD H14 H14 H 0 1 N N N 24.910 7.691 6.045 0.242 -2.275 3.179 H14 CBD 59 CBD HNB HNB H 0 1 N N N 23.891 7.053 2.681 -2.490 -0.275 3.936 HNB CBD 60 CBD HOB3 3HOB H 0 0 N N N 24.176 1.168 6.324 -5.286 -2.751 -1.575 HOB3 CBD 61 CBD HB3 HB3 H 0 1 N N N 20.113 5.670 5.722 0.594 -0.793 -0.450 HB3 CBD 62 CBD HB4 HB4 H 0 1 N N N 21.231 7.316 4.316 0.528 -0.499 1.990 HB4 CBD 63 CBD HB6 HB6 H 0 1 N N N 25.024 5.152 4.723 -3.737 -0.786 1.909 HB6 CBD 64 CBD HNC HNC H 0 1 N N N 21.657 3.718 7.975 -2.099 -1.746 -2.464 HNC CBD 65 CBD HND HND H 0 1 N N N 17.517 -0.169 7.967 -0.078 -0.816 -6.607 HND CBD 66 CBD HOD3 3HOD H 0 0 N N N 16.376 -4.180 8.267 -0.810 -1.520 -9.935 HOD3 CBD 67 CBD HD3 HD3 H 0 1 N N N 20.134 1.339 10.221 2.817 0.729 -5.258 HD3 CBD 68 CBD HD4 HD4 H 0 1 N N N 21.520 -0.121 11.659 4.528 1.910 -6.573 HD4 CBD 69 CBD HD5 HD5 H 0 1 N N N 21.110 -2.580 11.753 4.162 2.342 -8.969 HD5 CBD 70 CBD HD6 HD6 H 0 1 N N N 19.302 -3.585 10.418 2.084 1.595 -10.055 HD6 CBD 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CBD C1 SA SING N N 1 CBD C1 C2 DOUB Y N 2 CBD C1 C14 SING Y N 3 CBD SA O1A DOUB N N 4 CBD SA O2A DOUB N N 5 CBD SA O3A SING N N 6 CBD O3A HOA3 SING N N 7 CBD C2 N2 SING N N 8 CBD C2 C3 SING Y N 9 CBD N2 HN21 SING N N 10 CBD N2 HN22 SING N N 11 CBD C3 C4 SING N N 12 CBD C3 C12 DOUB Y N 13 CBD C4 O4 DOUB N N 14 CBD C4 C5 SING N N 15 CBD C5 C6 DOUB Y N 16 CBD C5 C10 SING Y N 17 CBD C6 C7 SING Y N 18 CBD C6 H6 SING N N 19 CBD C7 C8 DOUB Y N 20 CBD C7 H7 SING N N 21 CBD C8 C9 SING Y N 22 CBD C8 H8 SING N N 23 CBD C9 C10 DOUB Y N 24 CBD C9 H9 SING N N 25 CBD C10 C11 SING N N 26 CBD C11 O11 DOUB N N 27 CBD C11 C12 SING N N 28 CBD C12 C13 SING Y N 29 CBD C13 C14 DOUB Y N 30 CBD C13 NB SING N N 31 CBD C14 H14 SING N N 32 CBD NB CB5 SING N N 33 CBD NB HNB SING N N 34 CBD CB1 SB SING N N 35 CBD CB1 CB2 DOUB Y N 36 CBD CB1 CB6 SING Y N 37 CBD SB O1B DOUB N N 38 CBD SB O2B DOUB N N 39 CBD SB O3B SING N N 40 CBD O3B HOB3 SING N N 41 CBD CB2 CB3 SING Y N 42 CBD CB2 NC SING N N 43 CBD CB3 CB4 DOUB Y N 44 CBD CB3 HB3 SING N N 45 CBD CB4 CB5 SING Y N 46 CBD CB4 HB4 SING N N 47 CBD CB5 CB6 DOUB Y N 48 CBD CB6 HB6 SING N N 49 CBD NC CC6 SING N N 50 CBD NC HNC SING N N 51 CBD NC1 CC2 DOUB Y N 52 CBD NC1 CC6 SING Y N 53 CBD CC2 CL SING N N 54 CBD CC2 NC3 SING Y N 55 CBD NC3 CC4 DOUB Y N 56 CBD CC4 NC5 SING Y N 57 CBD CC4 ND SING N N 58 CBD NC5 CC6 DOUB Y N 59 CBD ND CD2 SING N N 60 CBD ND HND SING N N 61 CBD CD1 SD SING N N 62 CBD CD1 CD2 DOUB Y N 63 CBD CD1 CD6 SING Y N 64 CBD SD O1D DOUB N N 65 CBD SD O2D DOUB N N 66 CBD SD O3D SING N N 67 CBD O3D HOD3 SING N N 68 CBD CD2 CD3 SING Y N 69 CBD CD3 CD4 DOUB Y N 70 CBD CD3 HD3 SING N N 71 CBD CD4 CD5 SING Y N 72 CBD CD4 HD4 SING N N 73 CBD CD5 CD6 DOUB Y N 74 CBD CD5 HD5 SING N N 75 CBD CD6 HD6 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CBD SMILES ACDLabs 10.04 "Clc1nc(nc(n1)Nc5ccc(Nc4cc(c(N)c3C(=O)c2ccccc2C(=O)c34)S(=O)(=O)O)cc5S(=O)(=O)O)Nc6ccccc6S(=O)(=O)O" CBD SMILES_CANONICAL CACTVS 3.341 "Nc1c(cc(Nc2ccc(Nc3nc(Cl)nc(Nc4ccccc4[S](O)(=O)=O)n3)c(c2)[S](O)(=O)=O)c5C(=O)c6ccccc6C(=O)c15)[S](O)(=O)=O" CBD SMILES CACTVS 3.341 "Nc1c(cc(Nc2ccc(Nc3nc(Cl)nc(Nc4ccccc4[S](O)(=O)=O)n3)c(c2)[S](O)(=O)=O)c5C(=O)c6ccccc6C(=O)c15)[S](O)(=O)=O" CBD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)C(=O)c3c(cc(c(c3C2=O)N)S(=O)(=O)O)Nc4ccc(c(c4)S(=O)(=O)O)Nc5nc(nc(n5)Cl)Nc6ccccc6S(=O)(=O)O" CBD SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)C(=O)c3c(cc(c(c3C2=O)N)S(=O)(=O)O)Nc4ccc(c(c4)S(=O)(=O)O)Nc5nc(nc(n5)Cl)Nc6ccccc6S(=O)(=O)O" CBD InChI InChI 1.03 ;InChI=1S/C29H20ClN7O11S3/c30-27-35-28(33-16-7-3-4-8-19(16)49(40,41)42)37-29(36-27)34-17-10-9-13(11-20(17)50(43,44)45)32-18-12-21(51(46,47)48)24(31)23-22(18)25(38)14-5-1-2-6-15(14)26(23)39/h1-12,32H,31H2,(H,40,41,42)(H,43,44,45)(H,46,47,48)(H2,33,34,35,36,37) ; CBD InChIKey InChI 1.03 YKCWQPZFAFZLBI-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CBD "SYSTEMATIC NAME" ACDLabs 10.04 "1-amino-4-{[4-({4-chloro-6-[(2-sulfophenyl)amino]-1,3,5-triazin-2-yl}amino)-3-sulfophenyl]amino}-9,10-dioxo-9,10-dihydroanthracene-2-sulfonic acid" CBD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-amino-4-[[4-[[4-chloro-6-[(2-sulfophenyl)amino]-1,3,5-triazin-2-yl]amino]-3-sulfo-phenyl]amino]-9,10-dioxo-anthracene-2-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CBD "Create component" 1999-07-08 RCSB CBD "Modify descriptor" 2011-06-04 RCSB #