data_CG1 # _chem_comp.id CG1 _chem_comp.name "5'-O-[(R)-hydroxy(methoxy)phosphoryl]guanosine" _chem_comp.type "RNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H16 N5 O8 P" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-03-26 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 377.247 _chem_comp.one_letter_code G _chem_comp.three_letter_code CG1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1F6U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CG1 OP3 OP3 O 0 1 N N N -42.627 -6.410 3.043 -5.354 1.555 -1.112 OP3 CG1 1 CG1 P P P 0 1 N N R -41.555 -6.296 1.861 -4.864 0.526 0.026 P CG1 2 CG1 OP1 OP1 O 0 1 N N N -40.306 -6.988 2.251 -5.959 -0.641 0.201 OP1 CG1 3 CG1 OP2 OP2 O 0 1 N N N -41.446 -4.886 1.422 -4.703 1.248 1.308 OP2 CG1 4 CG1 "O5'" "O5'" O 0 1 N N N -42.234 -7.131 0.677 -3.455 -0.121 -0.406 "O5'" CG1 5 CG1 "C5'" "C5'" C 0 1 N N N -41.913 -8.509 0.502 -2.708 -0.996 0.441 "C5'" CG1 6 CG1 "C4'" "C4'" C 0 1 N N R -43.001 -9.199 -0.291 -1.425 -1.426 -0.273 "C4'" CG1 7 CG1 "O4'" "O4'" O 0 1 N N N -43.986 -9.352 0.287 -0.560 -0.292 -0.449 "O4'" CG1 8 CG1 "C3'" "C3'" C 0 1 N N S -43.439 -8.448 -1.545 -0.665 -2.453 0.588 "C3'" CG1 9 CG1 "O3'" "O3'" O 0 1 N N N -42.616 -8.836 -2.642 -0.524 -3.689 -0.116 "O3'" CG1 10 CG1 "C2'" "C2'" C 0 1 N N R -44.873 -8.845 -1.764 0.719 -1.800 0.824 "C2'" CG1 11 CG1 "O2'" "O2'" O 0 1 N N N -44.783 -9.760 -2.833 1.765 -2.768 0.720 "O2'" CG1 12 CG1 "C1'" "C1'" C 0 1 N N R -45.209 -9.456 -0.407 0.796 -0.774 -0.336 "C1'" CG1 13 CG1 N9 N9 N 0 1 Y N N -46.291 -8.746 0.309 1.707 0.321 0.005 N9 CG1 14 CG1 C8 C8 C 0 1 Y N N -46.173 -7.657 1.098 1.356 1.524 0.546 C8 CG1 15 CG1 N7 N7 N 0 1 Y N N -47.339 -7.258 1.596 2.417 2.257 0.718 N7 CG1 16 CG1 C5 C5 C 0 1 Y N N -48.240 -8.153 1.084 3.509 1.571 0.299 C5 CG1 17 CG1 C6 C6 C 0 1 N N N -49.638 -8.266 1.240 4.893 1.858 0.248 C6 CG1 18 CG1 O6 O6 O 0 1 N N N -50.343 -7.519 1.917 5.323 2.930 0.638 O6 CG1 19 CG1 N1 N1 N 0 1 N N N -50.261 -9.286 0.588 5.726 0.915 -0.245 N1 CG1 20 CG1 C2 C2 C 0 1 N N N -49.511 -10.123 -0.165 5.234 -0.280 -0.678 C2 CG1 21 CG1 N2 N2 N 0 1 N N N -50.262 -11.062 -0.735 6.104 -1.219 -1.173 N2 CG1 22 CG1 N3 N3 N 0 1 N N N -48.183 -10.110 -0.383 3.950 -0.559 -0.636 N3 CG1 23 CG1 C4 C4 C 0 1 Y N N -47.621 -9.071 0.295 3.066 0.324 -0.156 C4 CG1 24 CG1 "H5'" "H5'" H 0 1 N N N -41.827 -8.987 1.489 -2.452 -0.476 1.365 "H5'" CG1 25 CG1 "H5'A" "H5'A" H 0 0 N N N -40.960 -8.594 -0.040 -3.307 -1.876 0.674 "H5'A" CG1 26 CG1 "H4'" "H4'" H 0 1 N N N -42.507 -10.152 -0.529 -1.669 -1.860 -1.243 "H4'" CG1 27 CG1 "H3'" "H3'" H 0 1 N N N -43.345 -7.357 -1.446 -1.179 -2.612 1.536 "H3'" CG1 28 CG1 "H2'" "H2'" H 0 1 N N N -45.634 -8.096 -2.028 0.751 -1.297 1.791 "H2'" CG1 29 CG1 C C C 0 1 N N N -42.246 -6.103 4.383 -6.520 2.369 -0.975 C CG1 30 CG1 HOP1 HOP1 H 0 0 N N N -39.771 -7.136 1.480 -6.116 -1.156 -0.602 HOP1 CG1 31 CG1 "HO3'" "HO3'" H 0 0 N N N -43.149 -8.922 -3.423 -0.052 -4.372 0.380 "HO3'" CG1 32 CG1 "HO2'" "HO2'" H 0 0 N N N -44.763 -9.285 -3.656 1.706 -3.482 1.369 "HO2'" CG1 33 CG1 "H1'" "H1'" H 0 1 N N N -45.592 -10.483 -0.500 1.109 -1.262 -1.259 "H1'" CG1 34 CG1 H8 H8 H 0 1 N N N -45.234 -7.164 1.302 0.348 1.823 0.794 H8 CG1 35 CG1 HN1 HN1 H 0 1 N N N -51.250 -9.413 0.664 6.679 1.090 -0.290 HN1 CG1 36 CG1 HN2 HN2 H 0 1 N N N -49.676 -11.660 -1.282 7.054 -1.027 -1.211 HN2 CG1 37 CG1 HN2A HN2A H 0 0 N N N -51.252 -11.155 -0.633 5.768 -2.073 -1.485 HN2A CG1 38 CG1 H H H 0 1 N N N -41.151 -6.024 4.444 -7.395 1.732 -0.845 H CG1 39 CG1 HA HA H 0 1 N N N -42.700 -5.147 4.683 -6.411 3.018 -0.106 HA CG1 40 CG1 HB HB H 0 1 N N N -42.594 -6.901 5.055 -6.644 2.979 -1.870 HB CG1 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CG1 P OP3 SING N N 1 CG1 OP3 C SING N N 2 CG1 "O5'" P SING N N 3 CG1 OP2 P DOUB N N 4 CG1 P OP1 SING N N 5 CG1 OP1 HOP1 SING N N 6 CG1 "C5'" "O5'" SING N N 7 CG1 "C4'" "C5'" SING N N 8 CG1 "H5'A" "C5'" SING N N 9 CG1 "C5'" "H5'" SING N N 10 CG1 "C3'" "C4'" SING N N 11 CG1 "H4'" "C4'" SING N N 12 CG1 "C4'" "O4'" SING N N 13 CG1 "C1'" "O4'" SING N N 14 CG1 "O3'" "C3'" SING N N 15 CG1 "C2'" "C3'" SING N N 16 CG1 "C3'" "H3'" SING N N 17 CG1 "O3'" "HO3'" SING N N 18 CG1 "O2'" "C2'" SING N N 19 CG1 "H2'" "C2'" SING N N 20 CG1 "C2'" "C1'" SING N N 21 CG1 "O2'" "HO2'" SING N N 22 CG1 "C1'" N9 SING N N 23 CG1 "C1'" "H1'" SING N N 24 CG1 C4 N9 SING Y N 25 CG1 N9 C8 SING Y N 26 CG1 C8 N7 DOUB Y N 27 CG1 C8 H8 SING N N 28 CG1 C5 N7 SING Y N 29 CG1 C4 C5 DOUB Y N 30 CG1 C5 C6 SING N N 31 CG1 N1 C6 SING N N 32 CG1 C6 O6 DOUB N N 33 CG1 C2 N1 SING N N 34 CG1 N1 HN1 SING N N 35 CG1 N2 C2 SING N N 36 CG1 N3 C2 DOUB N N 37 CG1 N2 HN2 SING N N 38 CG1 N2 HN2A SING N N 39 CG1 N3 C4 SING N N 40 CG1 C H SING N N 41 CG1 C HA SING N N 42 CG1 C HB SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CG1 SMILES ACDLabs 10.04 "O=P(O)(OC)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O" CG1 SMILES_CANONICAL CACTVS 3.341 "CO[P@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3C(=O)NC(=Nc23)N" CG1 SMILES CACTVS 3.341 "CO[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3C(=O)NC(=Nc23)N" CG1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CO[P@@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2N=C(NC3=O)N)O)O" CG1 SMILES "OpenEye OEToolkits" 1.5.0 "COP(=O)(O)OCC1C(C(C(O1)n2cnc3c2N=C(NC3=O)N)O)O" CG1 InChI InChI 1.03 "InChI=1S/C11H16N5O8P/c1-22-25(20,21)23-2-4-6(17)7(18)10(24-4)16-3-13-5-8(16)14-11(12)15-9(5)19/h3-4,6-7,10,17-18H,2H2,1H3,(H,20,21)(H3,12,14,15,19)/t4-,6-,7-,10-/m1/s1" CG1 InChIKey InChI 1.03 CTLHMSXPFVHJEK-KQYNXXCUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CG1 "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(R)-hydroxy(methoxy)phosphoryl]guanosine" CG1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl methyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CG1 "Create component" 2008-03-26 RCSB CG1 "Modify aromatic_flag" 2011-06-04 RCSB CG1 "Modify descriptor" 2011-06-04 RCSB #