data_CH1 # _chem_comp.id CH1 _chem_comp.name "3'-DEOXY-CYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H16 N3 O13 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-10-24 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 467.157 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CH1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1N35 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CH1 N1 N1 N 0 1 N N N -7.290 89.726 19.059 -4.869 0.429 0.443 N1 CH1 1 CH1 C2 C2 C 0 1 N N N -7.564 88.365 19.260 -4.537 1.166 -0.632 C2 CH1 2 CH1 N3 N3 N 0 1 N N N -8.405 87.924 20.212 -5.105 2.349 -0.857 N3 CH1 3 CH1 C4 C4 C 0 1 N N N -9.041 88.802 21.039 -6.017 2.832 -0.024 C4 CH1 4 CH1 C5 C5 C 0 1 N N N -8.830 90.184 20.916 -6.384 2.087 1.115 C5 CH1 5 CH1 C6 C6 C 0 1 N N N -7.943 90.598 19.907 -5.802 0.883 1.328 C6 CH1 6 CH1 O2 O2 O 0 1 N N N -7.043 87.456 18.571 -3.700 0.744 -1.413 O2 CH1 7 CH1 N4 N4 N 0 1 N N N -9.862 88.288 21.958 -6.597 4.056 -0.267 N4 CH1 8 CH1 "C1'" C1* C 0 1 N N R -6.328 90.194 17.974 -4.227 -0.869 0.665 "C1'" CH1 9 CH1 "C2'" C2* C 0 1 N N R -6.959 90.216 16.579 -4.577 -1.844 -0.480 "C2'" CH1 10 CH1 "O2'" O2* O 0 1 N N N -7.028 88.896 16.072 -5.643 -2.716 -0.096 "O2'" CH1 11 CH1 "C3'" C3* C 0 1 N N N -6.052 91.120 15.805 -3.273 -2.647 -0.700 "C3'" CH1 12 CH1 "C4'" C4* C 0 1 N N S -5.363 91.972 16.877 -2.293 -2.063 0.341 "C4'" CH1 13 CH1 "O4'" O4* O 0 1 N N N -5.889 91.538 18.143 -2.790 -0.734 0.611 "O4'" CH1 14 CH1 "C5'" C5* C 0 1 N N N -5.687 93.405 16.507 -0.877 -1.995 -0.236 "C5'" CH1 15 CH1 "O5'" O5* O 0 1 N N N -6.467 94.050 17.489 0.019 -1.493 0.758 "O5'" CH1 16 CH1 PA PA P 0 1 N N S -7.681 95.119 17.133 1.481 -1.449 0.086 PA CH1 17 CH1 O1A O1A O 0 1 N N N -7.036 96.501 16.806 1.427 -0.655 -1.162 O1A CH1 18 CH1 O2A O2A O 0 1 N N N -8.538 95.214 18.414 1.963 -2.948 -0.252 O2A CH1 19 CH1 O3A O3A O 0 1 N N N -8.484 94.455 15.815 2.522 -0.768 1.109 O3A CH1 20 CH1 PB PB P 0 1 N N R -8.772 95.357 14.453 3.778 -0.272 0.234 PB CH1 21 CH1 O1B O1B O 0 1 N N N -9.526 94.400 13.458 3.291 0.410 -0.986 O1B CH1 22 CH1 O2B O2B O 0 1 N N N -7.419 95.829 13.818 4.676 -1.542 -0.184 O2B CH1 23 CH1 O3B O3B O 0 1 N N N -9.826 96.613 14.822 4.667 0.752 1.102 O3B CH1 24 CH1 PG PG P 0 1 N N N -9.918 97.994 13.917 5.554 1.599 0.059 PG CH1 25 CH1 O1G O1G O 0 1 N N N -8.782 98.493 12.967 4.704 2.034 -1.071 O1G CH1 26 CH1 O2G O2G O 0 1 N N N -10.988 99.042 14.455 6.165 2.891 0.800 O2G CH1 27 CH1 O3G O3G O 0 1 N N N -8.927 98.527 15.019 6.754 0.680 -0.495 O3G CH1 28 CH1 H5 H5 H 0 1 N N N -9.324 90.893 21.564 -7.126 2.466 1.803 H5 CH1 29 CH1 H6 H6 H 0 1 N N N -7.763 91.656 19.789 -6.069 0.292 2.191 H6 CH1 30 CH1 HN41 1HN4 H 0 0 N N N -10.388 88.817 22.624 -6.340 4.568 -1.049 HN41 CH1 31 CH1 HN42 2HN4 H 0 0 N N N -9.869 87.291 21.876 -7.267 4.404 0.342 HN42 CH1 32 CH1 "H1'" H1* H 0 1 N N N -5.507 89.467 18.064 -4.533 -1.284 1.625 "H1'" CH1 33 CH1 "H2'" H2* H 0 1 N N N -7.996 90.582 16.541 -4.842 -1.293 -1.382 "H2'" CH1 34 CH1 "HO2'" *HO2 H 0 0 N N N -7.043 88.921 15.122 -5.772 -3.337 -0.825 "HO2'" CH1 35 CH1 "H3'2" 2H3* H 0 0 N N N -6.597 91.732 15.071 -2.894 -2.494 -1.710 "H3'2" CH1 36 CH1 "H3'" H3* H 0 1 N N N -5.319 90.544 15.221 -3.443 -3.707 -0.511 "H3'" CH1 37 CH1 "H4'" H4* H 0 1 N N N -4.269 91.878 16.944 -2.302 -2.663 1.251 "H4'" CH1 38 CH1 "H5'1" 1H5* H 0 0 N N N -6.267 93.389 15.572 -0.561 -2.993 -0.540 "H5'1" CH1 39 CH1 "H5'2" 2H5* H 0 0 N N N -4.743 93.958 16.392 -0.869 -1.332 -1.101 "H5'2" CH1 40 CH1 HOA2 2HOA H 0 0 N N N -7.970 95.234 19.175 1.984 -3.429 0.587 HOA2 CH1 41 CH1 HOB2 2HOB H 0 0 N N N -7.526 95.924 12.879 4.973 -1.956 0.638 HOB2 CH1 42 CH1 HOG2 2HOG H 0 0 N N N -10.799 99.251 15.362 6.688 3.369 0.142 HOG2 CH1 43 CH1 HOG3 3HOG H 0 0 N N N -8.062 98.634 14.642 7.282 0.418 0.272 HOG3 CH1 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CH1 N1 C2 SING N N 1 CH1 N1 C6 SING N N 2 CH1 N1 "C1'" SING N N 3 CH1 C2 N3 SING N N 4 CH1 C2 O2 DOUB N N 5 CH1 N3 C4 DOUB N N 6 CH1 C4 C5 SING N N 7 CH1 C4 N4 SING N N 8 CH1 C5 C6 DOUB N N 9 CH1 C5 H5 SING N N 10 CH1 C6 H6 SING N N 11 CH1 N4 HN41 SING N N 12 CH1 N4 HN42 SING N N 13 CH1 "C1'" "C2'" SING N N 14 CH1 "C1'" "O4'" SING N N 15 CH1 "C1'" "H1'" SING N N 16 CH1 "C2'" "O2'" SING N N 17 CH1 "C2'" "C3'" SING N N 18 CH1 "C2'" "H2'" SING N N 19 CH1 "O2'" "HO2'" SING N N 20 CH1 "C3'" "C4'" SING N N 21 CH1 "C3'" "H3'2" SING N N 22 CH1 "C3'" "H3'" SING N N 23 CH1 "C4'" "O4'" SING N N 24 CH1 "C4'" "C5'" SING N N 25 CH1 "C4'" "H4'" SING N N 26 CH1 "C5'" "O5'" SING N N 27 CH1 "C5'" "H5'1" SING N N 28 CH1 "C5'" "H5'2" SING N N 29 CH1 "O5'" PA SING N N 30 CH1 PA O1A DOUB N N 31 CH1 PA O2A SING N N 32 CH1 PA O3A SING N N 33 CH1 O2A HOA2 SING N N 34 CH1 O3A PB SING N N 35 CH1 PB O1B DOUB N N 36 CH1 PB O2B SING N N 37 CH1 PB O3B SING N N 38 CH1 O2B HOB2 SING N N 39 CH1 O3B PG SING N N 40 CH1 PG O1G DOUB N N 41 CH1 PG O2G SING N N 42 CH1 PG O3G SING N N 43 CH1 O2G HOG2 SING N N 44 CH1 O3G HOG3 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CH1 SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)C(O)C2" CH1 SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)C[C@H]2O" CH1 SMILES CACTVS 3.341 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)C[CH]2O" CH1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H](O[C@H]([C@@H]1O)N2C=CC(=NC2=O)N)CO[P@](=O)(O)O[P@](=O)(O)OP(=O)(O)O" CH1 SMILES "OpenEye OEToolkits" 1.5.0 "C1C(OC(C1O)N2C=CC(=NC2=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O" CH1 InChI InChI 1.03 "InChI=1S/C9H16N3O13P3/c10-7-1-2-12(9(14)11-7)8-6(13)3-5(23-8)4-22-27(18,19)25-28(20,21)24-26(15,16)17/h1-2,5-6,8,13H,3-4H2,(H,18,19)(H,20,21)(H2,10,11,14)(H2,15,16,17)/t5-,6+,8+/m0/s1" CH1 InChIKey InChI 1.03 CHKFLBOLYREYDO-SHYZEUOFSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CH1 "SYSTEMATIC NAME" ACDLabs 10.04 ;3'-deoxycytidine 5'-(tetrahydrogen triphosphate) ; CH1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-4-hydroxy-oxolan-2-yl]methyl (hydroxy-phosphonooxy-phosphoryl) hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CH1 "Create component" 2002-10-24 RCSB CH1 "Modify descriptor" 2011-06-04 RCSB #