data_CKP # _chem_comp.id CKP _chem_comp.name "6-O-phosphono-beta-D-psicofuranosonic acid" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H11 O10 P" _chem_comp.mon_nstd_parent_comp_id PSV _chem_comp.pdbx_synonyms ;(2R,3R,4S,5R)-2,3,4-TRIHYDROXY-5-[(PHOSPHONATOOXY)METHYL]TETRAHYDROFURAN-2-CARBOXYLIC ACID; 2-KETO-6-PHOSPHATE-D-GLUCONIC ACID, ALPHA-FURANOSE FORM; 6-O-phosphono-beta-D-psicosonic acid; 6-O-phosphono-D-psicosonic acid; 6-O-phosphono-psicosonic acid ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-01-19 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 274.119 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CKP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2DCN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 CKP "(2R,3R,4S,5R)-2,3,4-TRIHYDROXY-5-[(PHOSPHONATOOXY)METHYL]TETRAHYDROFURAN-2-CARBOXYLIC ACID" PDB ? 2 CKP "2-KETO-6-PHOSPHATE-D-GLUCONIC ACID, ALPHA-FURANOSE FORM" PDB ? 3 CKP "6-O-phosphono-beta-D-psicosonic acid" PDB ? 4 CKP "6-O-phosphono-D-psicosonic acid" PDB ? 5 CKP "6-O-phosphono-psicosonic acid" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CKP O3P O3P O 0 1 N N N 17.274 -19.738 23.382 -4.210 1.263 -1.140 O3P CKP 1 CKP P P P 0 1 N N N 17.180 -19.132 21.989 -3.549 0.308 -0.026 P CKP 2 CKP O1P O1P O 0 1 N N N 16.909 -20.110 20.885 -3.641 0.959 1.300 O1P CKP 3 CKP O2P O2P O 0 1 N N N 18.257 -18.134 21.637 -4.334 -1.097 0.010 O2P CKP 4 CKP O6 O1 O 0 1 N N N 15.768 -18.362 22.136 -2.002 0.049 -0.390 O6 CKP 5 CKP C6 C1 C 0 1 N N N 15.455 -17.238 21.335 -1.113 -0.676 0.462 C6 CKP 6 CKP C5 C2 C 0 1 N N R 13.967 -16.994 21.346 0.274 -0.736 -0.182 C5 CKP 7 CKP O2 O2 O 0 1 N Y N 11.191 -16.417 22.395 2.658 0.394 -1.744 O2 CKP 8 CKP C4 C3 C 0 1 N N S 13.776 -15.589 20.802 1.258 -1.529 0.715 C4 CKP 9 CKP O4 O3 O 0 1 N N N 12.931 -15.627 19.653 1.180 -2.930 0.444 O4 CKP 10 CKP C3 C4 C 0 1 N N R 13.185 -14.919 22.027 2.629 -0.957 0.278 C3 CKP 11 CKP O3 O4 O 0 1 N N N 12.457 -13.723 21.837 3.249 -1.819 -0.677 O3 CKP 12 CKP C2 C5 C 0 1 N N R 12.476 -15.984 22.862 2.283 0.400 -0.365 C2 CKP 13 CKP O5 O5 O 0 1 N N N 13.390 -17.064 22.684 0.863 0.581 -0.245 O5 CKP 14 CKP C1 C6 C 0 1 N N N 12.312 -15.375 24.247 3.007 1.508 0.357 C1 CKP 15 CKP O6B O6B O 0 1 N N N 11.145 -15.097 24.608 3.709 2.273 -0.260 O6B CKP 16 CKP O1 O6A O 0 1 N N N 13.307 -15.106 24.965 2.870 1.645 1.685 O1 CKP 17 CKP H1 H1 H 0 1 N N N 17.141 -20.677 23.329 -5.144 1.462 -0.984 H1 CKP 18 CKP H2 H2 H 0 1 N N N 18.577 -18.309 20.760 -4.315 -1.580 -0.827 H2 CKP 19 CKP H61 H3 H 0 1 N N N 15.786 -17.423 20.302 -1.044 -0.174 1.427 H61 CKP 20 CKP H62 H4 H 0 1 N N N 15.972 -16.352 21.733 -1.491 -1.688 0.605 H62 CKP 21 CKP H5 H5 H 0 1 N N N 13.471 -17.715 20.679 0.216 -1.178 -1.176 H5 CKP 22 CKP HO2 H6 H 0 1 N Y N 10.520 -16.132 23.004 2.467 1.221 -2.207 HO2 CKP 23 CKP H4 H7 H 0 1 N N N 14.753 -15.143 20.564 1.071 -1.328 1.770 H4 CKP 24 CKP HO4 H8 H 0 1 N Y N 12.814 -14.746 19.316 1.778 -3.468 0.980 HO4 CKP 25 CKP H3 H9 H 0 1 N N N 14.059 -14.637 22.633 3.277 -0.815 1.143 H3 CKP 26 CKP HO3 H10 H 0 1 N Y N 12.142 -13.407 22.676 4.111 -1.509 -0.986 HO3 CKP 27 CKP HO1 H11 H 0 1 N Y N 13.016 -14.686 25.766 3.354 2.370 2.104 HO1 CKP 28 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CKP O4 C4 SING N N 1 CKP C4 C5 SING N N 2 CKP C4 C3 SING N N 3 CKP O1P P DOUB N N 4 CKP C6 C5 SING N N 5 CKP C6 O6 SING N N 6 CKP C5 O5 SING N N 7 CKP O2P P SING N N 8 CKP O3 C3 SING N N 9 CKP P O6 SING N N 10 CKP P O3P SING N N 11 CKP C3 C2 SING N N 12 CKP O2 C2 SING N N 13 CKP O5 C2 SING N N 14 CKP C2 C1 SING N N 15 CKP C1 O6B DOUB N N 16 CKP C1 O1 SING N N 17 CKP O3P H1 SING N N 18 CKP O2P H2 SING N N 19 CKP C6 H61 SING N N 20 CKP C6 H62 SING N N 21 CKP C5 H5 SING N N 22 CKP O2 HO2 SING N N 23 CKP C4 H4 SING N N 24 CKP O4 HO4 SING N N 25 CKP C3 H3 SING N N 26 CKP O3 HO3 SING N N 27 CKP O1 HO1 SING N N 28 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CKP InChI InChI 1.03 "InChI=1S/C6H11O10P/c7-3-2(1-15-17(12,13)14)16-6(11,4(3)8)5(9)10/h2-4,7-8,11H,1H2,(H,9,10)(H2,12,13,14)/t2-,3-,4-,6-/m1/s1" CKP InChIKey InChI 1.03 LXQWHMQOSMCJIZ-ZGEUXELVSA-N CKP SMILES_CANONICAL CACTVS 3.385 "O[C@H]1[C@@H](O)[C@@](O)(O[C@@H]1CO[P](O)(O)=O)C(O)=O" CKP SMILES CACTVS 3.385 "O[CH]1[CH](O)[C](O)(O[CH]1CO[P](O)(O)=O)C(O)=O" CKP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C([C@@H]1[C@H]([C@H]([C@@](O1)(C(=O)O)O)O)O)OP(=O)(O)O" CKP SMILES "OpenEye OEToolkits" 2.0.6 "C(C1C(C(C(O1)(C(=O)O)O)O)O)OP(=O)(O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CKP "SYSTEMATIC NAME" ACDLabs 10.04 "6-O-phosphono-beta-D-psicofuranosonic acid" CKP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S,5R)-2,3,4-trihydroxy-5-(phosphonooxymethyl)oxolane-2-carboxylic acid" # _pdbx_chem_comp_related.comp_id CKP _pdbx_chem_comp_related.related_comp_id PSV _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 CKP C6 PSV C6 "Carbohydrate core" 2 CKP C5 PSV C5 "Carbohydrate core" 3 CKP C4 PSV C4 "Carbohydrate core" 4 CKP C3 PSV C3 "Carbohydrate core" 5 CKP C2 PSV C2 "Carbohydrate core" 6 CKP C1 PSV C1 "Carbohydrate core" 7 CKP O6 PSV O6 "Carbohydrate core" 8 CKP O2 PSV O2 "Carbohydrate core" 9 CKP O4 PSV O4 "Carbohydrate core" 10 CKP O3 PSV O3 "Carbohydrate core" 11 CKP O5 PSV O5 "Carbohydrate core" 12 CKP O1 PSV O1 "Carbohydrate core" 13 CKP HO3 PSV HO3 "Carbohydrate core" 14 CKP HO1 PSV HO1 "Carbohydrate core" 15 CKP H61 PSV H61 "Carbohydrate core" 16 CKP H62 PSV H62 "Carbohydrate core" 17 CKP H5 PSV H5 "Carbohydrate core" 18 CKP HO2 PSV HO2 "Carbohydrate core" 19 CKP H4 PSV H4 "Carbohydrate core" 20 CKP HO4 PSV HO4 "Carbohydrate core" 21 CKP H3 PSV H3 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support CKP "CARBOHYDRATE ISOMER" D PDB ? CKP "CARBOHYDRATE RING" furanose PDB ? CKP "CARBOHYDRATE ANOMER" alpha PDB ? CKP "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CKP "Create component" 2006-01-19 RCSB CKP "Modify descriptor" 2011-06-04 RCSB CKP "Other modification" 2017-05-11 PDBJ CKP "Other modification" 2020-07-03 RCSB CKP "Modify parent residue" 2020-07-17 RCSB CKP "Modify name" 2020-07-17 RCSB CKP "Modify synonyms" 2020-07-17 RCSB CKP "Modify internal type" 2020-07-17 RCSB CKP "Modify linking type" 2020-07-17 RCSB CKP "Modify atom id" 2020-07-17 RCSB CKP "Modify component atom id" 2020-07-17 RCSB CKP "Modify leaving atom flag" 2020-07-17 RCSB ##