data_CNA # _chem_comp.id CNA _chem_comp.name CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H30 N7 O13 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2013-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 662.460 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CNA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4G1C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CNA PA PA P 0 1 N N N 19.514 7.854 19.118 1.531 2.978 -0.521 PA CNA 1 CNA O1A O1A O 0 1 N N N 20.042 7.208 20.445 1.343 4.482 0.022 O1A CNA 2 CNA O2A O2A O 0 1 N N N 20.523 8.343 18.137 1.886 3.013 -1.958 O2A CNA 3 CNA O5B O5B O 0 1 N N N 18.348 6.985 18.355 2.708 2.252 0.304 O5B CNA 4 CNA C5B C5B C 0 1 N N N 17.791 5.754 18.804 4.071 2.676 0.251 C5B CNA 5 CNA C4B C4B C 0 1 N N R 17.845 4.777 17.628 4.921 1.775 1.149 C4B CNA 6 CNA O4B O4B O 0 1 N N N 17.693 3.464 18.197 4.952 0.441 0.613 O4B CNA 7 CNA C3B C3B C 0 1 N N S 16.697 4.997 16.582 6.374 2.288 1.183 C3B CNA 8 CNA O3B O3B O 0 1 N N N 17.261 4.920 15.282 6.754 2.624 2.519 O3B CNA 9 CNA C2B C2B C 0 1 N N R 15.697 3.873 16.948 7.211 1.093 0.665 C2B CNA 10 CNA O2B O2B O 0 1 N N N 15.044 3.487 15.740 8.415 0.948 1.422 O2B CNA 11 CNA C1B C1B C 0 1 N N R 16.720 2.817 17.347 6.256 -0.103 0.911 C1B CNA 12 CNA N9A N9A N 0 1 Y N N 16.326 1.444 17.839 6.572 -1.210 0.005 N9A CNA 13 CNA C8A C8A C 0 1 Y N N 15.385 1.323 18.780 5.978 -1.465 -1.195 C8A CNA 14 CNA N7A N7A N 0 1 Y N N 15.323 0.048 19.165 6.503 -2.527 -1.734 N7A CNA 15 CNA C5A C5A C 0 1 Y N N 16.280 -0.614 18.522 7.465 -3.019 -0.917 C5A CNA 16 CNA C6A C6A C 0 1 Y N N 16.638 -1.904 18.567 8.344 -4.114 -0.973 C6A CNA 17 CNA N6A N6A N 0 1 N N N 15.930 -2.701 19.373 8.335 -4.975 -2.056 N6A CNA 18 CNA N1A N1A N 0 1 Y N N 17.658 -2.371 17.841 9.184 -4.303 0.039 N1A CNA 19 CNA C2A C2A C 0 1 Y N N 18.351 -1.489 17.010 9.200 -3.487 1.077 C2A CNA 20 CNA N3A N3A N 0 1 Y N N 17.967 -0.140 16.983 8.395 -2.450 1.172 N3A CNA 21 CNA C4A C4A C 0 1 Y N N 16.947 0.268 17.758 7.525 -2.177 0.206 C4A CNA 22 CNA O3 O3 O 0 1 N N N 18.638 9.127 19.555 0.157 2.161 -0.328 O3 CNA 23 CNA PN PN P 0 1 N N N 17.572 9.197 20.736 -1.225 2.088 -1.149 PN CNA 24 CNA O1N O1N O 0 1 N N N 16.553 10.314 20.195 -1.597 3.444 -1.610 O1N CNA 25 CNA O2N O2N O 0 1 N N N 16.902 7.934 21.166 -1.043 1.120 -2.422 O2N CNA 26 CNA O5D O5D O 0 1 N N N 18.398 9.929 21.972 -2.386 1.509 -0.195 O5D CNA 27 CNA C5D C5D C 0 1 N N N 19.134 11.141 21.684 -3.754 1.421 -0.600 C5D CNA 28 CNA C4D C4D C 0 1 N N R 20.471 11.208 22.462 -4.585 0.828 0.540 C4D CNA 29 CNA "C4'" "C4'" C 0 1 N N N 20.237 10.847 23.939 -6.082 0.842 0.166 "C4'" CNA 30 CNA C3D C3D C 0 1 N N R 21.467 10.184 21.924 -4.201 -0.646 0.761 C3D CNA 31 CNA O3D O3D O 0 1 N N N 22.855 10.585 22.192 -3.746 -0.837 2.102 O3D CNA 32 CNA C2D C2D C 0 1 N N S 21.162 8.981 22.775 -5.478 -1.475 0.513 C2D CNA 33 CNA O2D O2D O 0 1 N N N 22.274 8.070 22.693 -5.553 -2.566 1.434 O2D CNA 34 CNA C1D C1D C 0 1 N N R 20.995 9.553 24.186 -6.635 -0.476 0.762 C1D CNA 35 CNA N1N N1N N 1 1 Y N N 20.242 8.558 25.022 -7.846 -0.897 0.054 N1N CNA 36 CNA C2N C2N C 0 1 Y N N 20.950 7.524 25.655 -8.972 -1.014 0.726 C2N CNA 37 CNA C3N C3N C 0 1 Y N N 20.297 6.560 26.418 -10.145 -1.413 0.084 C3N CNA 38 CNA C7N C7N C 0 1 N N N 21.052 5.556 27.019 -11.409 -1.544 0.839 C7N CNA 39 CNA O7N O7N O 0 1 N N N 22.126 5.810 27.552 -11.433 -1.303 2.030 O7N CNA 40 CNA N7N N7N N 0 1 N N N 20.542 4.326 26.943 -12.535 -1.930 0.207 N7N CNA 41 CNA C4N C4N C 0 1 Y N N 18.904 6.594 26.540 -10.104 -1.687 -1.289 C4N CNA 42 CNA C5N C5N C 0 1 Y N N 18.179 7.606 25.907 -8.896 -1.549 -1.949 C5N CNA 43 CNA C6N C6N C 0 1 Y N N 18.834 8.583 25.144 -7.779 -1.144 -1.241 C6N CNA 44 CNA H1 H1 H 0 1 N N N 20.992 7.216 20.445 1.109 4.535 0.959 H1 CNA 45 CNA H2 H2 H 0 1 N N N 16.748 5.905 19.121 4.432 2.611 -0.776 H2 CNA 46 CNA H3 H3 H 0 1 N N N 18.377 5.361 19.648 4.145 3.707 0.597 H3 CNA 47 CNA H4 H4 H 0 1 N N N 18.815 4.871 17.118 4.507 1.760 2.157 H4 CNA 48 CNA H5 H5 H 0 1 N N N 16.229 5.977 16.758 6.490 3.149 0.524 H5 CNA 49 CNA H6 H6 H 0 1 N N N 17.858 5.648 15.152 7.677 2.898 2.607 H6 CNA 50 CNA H7 H7 H 0 1 N N N 15.022 4.154 17.770 7.431 1.203 -0.396 H7 CNA 51 CNA H8 H8 H 0 1 N N N 14.419 2.795 15.924 9.005 1.712 1.372 H8 CNA 52 CNA H9 H9 H 0 1 N N N 17.263 2.615 16.412 6.310 -0.431 1.949 H9 CNA 53 CNA H10 H10 H 0 1 N N N 14.775 2.126 19.166 5.188 -0.874 -1.633 H10 CNA 54 CNA H11 H11 H 0 1 N N N 16.291 -3.632 19.323 7.717 -4.826 -2.789 H11 CNA 55 CNA H12 H12 H 0 1 N N N 15.997 -2.368 20.314 8.947 -5.727 -2.083 H12 CNA 56 CNA H13 H13 H 0 1 N N N 19.169 -1.839 16.398 9.899 -3.677 1.878 H13 CNA 57 CNA H14 H14 H 0 1 N N N 15.964 8.014 21.041 -0.799 0.212 -2.194 H14 CNA 58 CNA H15 H15 H 0 1 N N N 19.349 11.178 20.606 -4.126 2.416 -0.841 H15 CNA 59 CNA H16 H16 H 0 1 N N N 18.516 12.007 21.965 -3.832 0.780 -1.478 H16 CNA 60 CNA H17 H17 H 0 1 N N N 20.894 12.221 22.387 -4.424 1.398 1.455 H17 CNA 61 CNA H18 H18 H 0 1 N N N 20.622 11.644 24.592 -6.579 1.702 0.614 H18 CNA 62 CNA H19 H19 H 0 1 N N N 19.163 10.702 24.130 -6.204 0.852 -0.918 H19 CNA 63 CNA H20 H20 H 0 1 N N N 21.293 9.980 20.857 -3.423 -0.939 0.057 H20 CNA 64 CNA H21 H21 H 0 1 N N N 23.447 9.928 21.845 -3.489 -1.747 2.304 H21 CNA 65 CNA H22 H22 H 0 1 N N N 20.226 8.504 22.447 -5.503 -1.840 -0.514 H22 CNA 66 CNA H23 H23 H 0 1 N N N 22.096 7.304 23.226 -4.820 -3.192 1.362 H23 CNA 67 CNA H24 H24 H 0 1 N N N 21.979 9.765 24.629 -6.828 -0.366 1.829 H24 CNA 68 CNA H25 H25 H 0 1 N N N 22.024 7.475 25.548 -8.989 -0.799 1.785 H25 CNA 69 CNA H26 H26 H 0 1 N N N 21.042 3.553 27.333 -12.516 -2.122 -0.744 H26 CNA 70 CNA H27 H27 H 0 1 N N N 19.660 4.177 26.496 -13.364 -2.016 0.702 H27 CNA 71 CNA H28 H28 H 0 1 N N N 18.392 5.841 27.121 -10.992 -1.998 -1.818 H28 CNA 72 CNA H29 H29 H 0 1 N N N 17.104 7.636 26.006 -8.827 -1.752 -3.008 H29 CNA 73 CNA H30 H30 H 0 1 N N N 18.263 9.355 24.649 -6.836 -1.032 -1.755 H30 CNA 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CNA O3B C3B SING N N 1 CNA O2B C2B SING N N 2 CNA C3B C2B SING N N 3 CNA C3B C4B SING N N 4 CNA C2B C1B SING N N 5 CNA N3A C2A DOUB Y N 6 CNA N3A C4A SING Y N 7 CNA C2A N1A SING Y N 8 CNA C1B N9A SING N N 9 CNA C1B O4B SING N N 10 CNA C4B O4B SING N N 11 CNA C4B C5B SING N N 12 CNA C4A N9A SING Y N 13 CNA C4A C5A DOUB Y N 14 CNA N9A C8A SING Y N 15 CNA N1A C6A DOUB Y N 16 CNA O2A PA DOUB N N 17 CNA O5B C5B SING N N 18 CNA O5B PA SING N N 19 CNA C5A C6A SING Y N 20 CNA C5A N7A SING Y N 21 CNA C6A N6A SING N N 22 CNA C8A N7A DOUB Y N 23 CNA PA O3 SING N N 24 CNA PA O1A SING N N 25 CNA O3 PN SING N N 26 CNA O1N PN DOUB N N 27 CNA PN O2N SING N N 28 CNA PN O5D SING N N 29 CNA C5D O5D SING N N 30 CNA C5D C4D SING N N 31 CNA C3D O3D SING N N 32 CNA C3D C4D SING N N 33 CNA C3D C2D SING N N 34 CNA C4D "C4'" SING N N 35 CNA O2D C2D SING N N 36 CNA C2D C1D SING N N 37 CNA "C4'" C1D SING N N 38 CNA C1D N1N SING N N 39 CNA N1N C6N DOUB Y N 40 CNA N1N C2N SING Y N 41 CNA C6N C5N SING Y N 42 CNA C2N C3N DOUB Y N 43 CNA C5N C4N DOUB Y N 44 CNA C3N C4N SING Y N 45 CNA C3N C7N SING N N 46 CNA N7N C7N SING N N 47 CNA C7N O7N DOUB N N 48 CNA O1A H1 SING N N 49 CNA C5B H2 SING N N 50 CNA C5B H3 SING N N 51 CNA C4B H4 SING N N 52 CNA C3B H5 SING N N 53 CNA O3B H6 SING N N 54 CNA C2B H7 SING N N 55 CNA O2B H8 SING N N 56 CNA C1B H9 SING N N 57 CNA C8A H10 SING N N 58 CNA N6A H11 SING N N 59 CNA N6A H12 SING N N 60 CNA C2A H13 SING N N 61 CNA O2N H14 SING N N 62 CNA C5D H15 SING N N 63 CNA C5D H16 SING N N 64 CNA C4D H17 SING N N 65 CNA "C4'" H18 SING N N 66 CNA "C4'" H19 SING N N 67 CNA C3D H20 SING N N 68 CNA O3D H21 SING N N 69 CNA C2D H22 SING N N 70 CNA O2D H23 SING N N 71 CNA C1D H24 SING N N 72 CNA C2N H25 SING N N 73 CNA N7N H26 SING N N 74 CNA N7N H27 SING N N 75 CNA C4N H28 SING N N 76 CNA C5N H29 SING N N 77 CNA C6N H30 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CNA SMILES ACDLabs 12.01 "O=C(N)c1ccc[n+](c1)C2CC(C(O)C2O)COP(=O)(O)OP(=O)(O)OCC5OC(n4cnc3c(ncnc34)N)C(O)C5O" CNA InChI InChI 1.03 ;InChI=1S/C22H29N7O13P2/c23-19-14-21(26-8-25-19)29(9-27-14)22-18(33)17(32)13(41-22)7-40-44(37,38)42-43(35,36)39-6-11-4-12(16(31)15(11)30)28-3-1-2-10(5-28)20(24)34/h1-3,5,8-9,11-13,15-18,22,30-33H,4,6-7H2,(H5-,23,24,25,26,34,35,36,37,38)/p+1/t11-,12-,13-,15-,16+,17-,18-,22-/m1/s1 ; CNA InChIKey InChI 1.03 DGPLSUKWXXSBCU-VGXGLJSLSA-O CNA SMILES_CANONICAL CACTVS 3.370 "NC(=O)c1ccc[n+](c1)[C@@H]2C[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O" CNA SMILES CACTVS 3.370 "NC(=O)c1ccc[n+](c1)[CH]2C[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O" CNA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(c[n+](c1)[C@@H]2C[C@@H]([C@H]([C@H]2O)O)COP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)C(=O)N" CNA SMILES "OpenEye OEToolkits" 1.7.6 "c1cc(c[n+](c1)C2CC(C(C2O)O)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CNA "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(S)-{[(S)-{[(1R,2R,3S,4R)-4-(3-carbamoylpyridinium-1-yl)-2,3-dihydroxycyclopentyl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]adenosine" CNA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(1R,2R,3S,4R)-4-(3-aminocarbonylpyridin-1-ium-1-yl)-2,3-bis(oxidanyl)cyclopentyl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CNA "Create component" 1999-07-08 RCSB CNA "Modify descriptor" 2011-06-04 RCSB CNA "Other modification" 2013-06-06 RCSB #