data_CQM # _chem_comp.id CQM _chem_comp.name Citramalyl-CoA _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H42 N7 O20 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-09-29 _chem_comp.pdbx_modified_date 2018-07-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 897.633 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CQM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6AQ4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CQM C2 C1 C 0 1 N N N -32.508 18.279 -15.483 -11.827 3.034 1.399 C2 CQM 1 CQM C4 C2 C 0 1 N N N -34.364 17.148 -16.460 -13.207 5.092 1.307 C4 CQM 2 CQM C6 C3 C 0 1 N N N -31.944 16.320 -16.813 -12.573 3.952 -0.802 C6 CQM 3 CQM P2A P1 P 0 1 N N N -22.712 25.417 -5.134 1.292 -3.919 0.570 P2A CQM 4 CQM O5A O1 O 0 1 N N N -21.594 26.385 -5.404 0.256 -3.548 1.560 O5A CQM 5 CQM O4A O2 O 0 1 N N N -23.779 25.993 -4.212 2.026 -5.272 1.042 O4A CQM 6 CQM O3A O3 O 0 1 N N N -22.227 24.035 -4.565 2.375 -2.733 0.456 O3A CQM 7 CQM O6A O4 O 0 1 N N N -23.406 25.081 -6.529 0.601 -4.155 -0.865 O6A CQM 8 CQM P1A P2 P 0 1 N N N -21.000 23.759 -3.620 3.157 -1.825 1.531 P1A CQM 9 CQM O1A O5 O 0 1 N N N -21.306 22.460 -2.888 3.668 -2.684 2.623 O1A CQM 10 CQM O2A O6 O 0 1 N N N -20.775 24.901 -2.626 2.151 -0.726 2.139 O2A CQM 11 CQM O5B O7 O 0 1 N N N -19.712 23.544 -4.498 4.391 -1.084 0.811 O5B CQM 12 CQM C5B C4 C 0 1 N N N -18.499 23.197 -3.913 5.342 -0.287 1.520 C5B CQM 13 CQM C4B C5 C 0 1 N N R -17.276 23.224 -4.830 6.376 0.268 0.538 C4B CQM 14 CQM O4B O8 O 0 1 N N N -17.544 22.388 -5.893 5.749 1.202 -0.357 O4B CQM 15 CQM C3B C6 C 0 1 N N S -17.045 24.552 -5.417 7.472 1.031 1.307 C3B CQM 16 CQM O3B O9 O 0 1 N N N -15.683 24.723 -5.697 8.751 0.435 1.079 O3B CQM 17 CQM C2B C7 C 0 1 N N R -17.779 24.555 -6.606 7.425 2.461 0.716 C2B CQM 18 CQM O2B O10 O 0 1 N N N -17.299 25.503 -7.505 8.743 2.981 0.533 O2B CQM 19 CQM C1B C8 C 0 1 N N R -17.834 23.144 -7.012 6.725 2.224 -0.651 C1B CQM 20 CQM P3B P3 P 0 1 N N N -14.656 25.169 -4.556 9.661 -0.168 2.263 P3B CQM 21 CQM O7A O11 O 0 1 N N N -13.430 25.768 -5.236 8.880 -1.168 3.025 O7A CQM 22 CQM O8A O12 O 0 1 N N N -14.252 23.958 -3.724 10.964 -0.871 1.632 O8A CQM 23 CQM O9A O13 O 0 1 N N N -15.309 26.189 -3.642 10.116 1.021 3.248 O9A CQM 24 CQM N9A N1 N 0 1 Y N N -18.932 22.692 -7.883 6.068 3.449 -1.113 N9A CQM 25 CQM C4A C9 C 0 1 Y N N -18.821 22.445 -9.199 6.655 4.469 -1.819 C4A CQM 26 CQM N3A N2 N 0 1 Y N N -17.794 22.522 -10.059 7.877 4.705 -2.285 N3A CQM 27 CQM C2A C10 C 0 1 Y N N -17.976 22.200 -11.337 8.140 5.812 -2.947 C2A CQM 28 CQM N1A N3 N 0 1 Y N N -19.177 21.798 -11.797 7.222 6.733 -3.181 N1A CQM 29 CQM C6A C11 C 0 1 Y N N -20.236 21.697 -10.985 5.973 6.584 -2.754 C6A CQM 30 CQM C5A C12 C 0 1 Y N N -20.078 22.024 -9.641 5.643 5.418 -2.042 C5A CQM 31 CQM N7A N4 N 0 1 Y N N -20.906 22.036 -8.576 4.512 4.937 -1.472 N7A CQM 32 CQM C8A C13 C 0 1 Y N N -20.203 22.441 -7.505 4.759 3.782 -0.927 C8A CQM 33 CQM N6A N5 N 0 1 N N N -21.521 21.254 -11.492 5.019 7.554 -3.004 N6A CQM 34 CQM CBP C14 C 0 1 N N N -25.010 24.030 -7.978 -0.892 -5.050 -2.541 CBP CQM 35 CQM CCP C15 C 0 1 N N N -24.530 24.256 -6.586 -0.477 -5.070 -1.069 CCP CQM 36 CQM CDP C16 C 0 1 N N N -25.293 25.365 -8.594 -1.342 -3.639 -2.924 CDP CQM 37 CQM CEP C17 C 0 1 N N N -26.301 23.173 -7.983 0.297 -5.460 -3.412 CEP CQM 38 CQM CAP C18 C 0 1 N N R -23.885 23.347 -8.726 -2.047 -6.030 -2.759 CAP CQM 39 CQM OAP O14 O 0 1 N N N -23.600 22.080 -8.186 -1.589 -7.364 -2.530 OAP CQM 40 CQM C9P C19 C 0 1 N N N -24.241 23.121 -10.190 -3.164 -5.711 -1.800 C9P CQM 41 CQM O9P O15 O 0 1 N N N -24.297 24.051 -10.961 -3.434 -6.483 -0.905 O9P CQM 42 CQM N8P N6 N 0 1 N N N -24.534 21.778 -10.641 -3.864 -4.567 -1.938 N8P CQM 43 CQM C7P C20 C 0 1 N N N -24.900 21.521 -12.003 -4.886 -4.210 -0.950 C7P CQM 44 CQM C6P C21 C 0 1 N N N -26.074 22.367 -12.523 -5.525 -2.875 -1.338 C6P CQM 45 CQM C5P C22 C 0 1 N N N -26.548 22.011 -13.903 -6.576 -2.508 -0.322 C5P CQM 46 CQM O5P O16 O 0 1 N N N -25.764 21.998 -14.831 -6.792 -3.241 0.620 O5P CQM 47 CQM N4P N7 N 0 1 N N N -27.939 21.704 -14.097 -7.276 -1.364 -0.460 N4P CQM 48 CQM C3P C23 C 0 1 N N N -28.406 21.335 -15.434 -8.297 -1.007 0.528 C3P CQM 49 CQM C2P C24 C 0 1 N N N -28.603 19.841 -15.576 -8.937 0.328 0.140 C2P CQM 50 CQM S1P S1 S 0 1 N N N -29.910 19.137 -14.561 -10.198 0.769 1.361 S1P CQM 51 CQM C1 C25 C 0 1 N N N -31.409 19.330 -15.581 -10.738 2.256 0.706 C1 CQM 52 CQM O2 O17 O 0 1 N N N -31.566 20.303 -16.367 -10.244 2.684 -0.316 O2 CQM 53 CQM C3 C26 C 0 1 N N S -32.899 17.506 -16.717 -12.118 4.314 0.614 C3 CQM 54 CQM O7 O18 O 0 1 N N N -32.839 18.236 -17.893 -10.934 5.111 0.545 O7 CQM 55 CQM O3 O19 O 0 1 N N N -35.329 17.736 -17.089 -13.999 4.520 2.018 O3 CQM 56 CQM O4 O20 O 0 1 N N N -34.606 16.273 -15.595 -13.297 6.420 1.135 O4 CQM 57 CQM H1 H1 H 0 1 N N N -33.413 18.792 -15.125 -12.730 2.426 1.452 H1 CQM 58 CQM H2 H2 H 0 1 N N N -32.183 17.543 -14.733 -11.503 3.292 2.408 H2 CQM 59 CQM H3 H3 H 0 1 N N N -31.988 15.737 -15.881 -12.780 4.864 -1.361 H3 CQM 60 CQM H4 H4 H 0 1 N N N -32.237 15.681 -17.659 -11.785 3.389 -1.303 H4 CQM 61 CQM H5 H5 H 0 1 N N N -30.919 16.687 -16.968 -13.476 3.344 -0.749 H5 CQM 62 CQM H6 H6 H 0 1 N N N -23.542 26.880 -3.968 2.718 -5.575 0.439 H6 CQM 63 CQM H7 H7 H 0 1 N N N -20.871 24.573 -1.739 1.777 -0.126 1.479 H7 CQM 64 CQM H8 H8 H 0 1 N N N -18.598 22.176 -3.515 4.829 0.539 2.012 H8 CQM 65 CQM H9 H9 H 0 1 N N N -18.313 23.897 -3.085 5.844 -0.900 2.268 H9 CQM 66 CQM H10 H10 H 0 1 N N N -16.389 22.896 -4.268 6.822 -0.548 -0.030 H10 CQM 67 CQM H11 H11 H 0 1 N N N -17.405 25.332 -4.730 7.246 1.051 2.374 H11 CQM 68 CQM H12 H12 H 0 1 N N N -18.809 24.842 -6.350 6.832 3.123 1.347 H12 CQM 69 CQM H13 H13 H 0 1 N N N -17.324 26.363 -7.102 8.766 3.875 0.164 H13 CQM 70 CQM H14 H14 H 0 1 N N N -16.945 23.031 -7.650 7.441 1.868 -1.392 H14 CQM 71 CQM H15 H15 H 0 1 N N N -13.315 23.821 -3.798 11.560 -1.257 2.289 H15 CQM 72 CQM H16 H16 H 0 1 N N N -14.821 27.003 -3.676 10.633 1.714 2.815 H16 CQM 73 CQM H17 H17 H 0 1 N N N -17.143 22.262 -12.021 9.143 5.974 -3.312 H17 CQM 74 CQM H18 H18 H 0 1 N N N -20.592 22.548 -6.503 4.033 3.174 -0.407 H18 CQM 75 CQM H19 H19 H 0 1 N N N -21.446 21.063 -12.471 5.259 8.355 -3.497 H19 CQM 76 CQM H20 H20 H 0 1 N N N -21.800 20.423 -11.011 4.110 7.434 -2.687 H20 CQM 77 CQM H21 H21 H 0 1 N N N -25.339 24.724 -6.007 -0.156 -6.076 -0.796 H21 CQM 78 CQM H22 H22 H 0 1 N N N -24.275 23.283 -6.140 -1.324 -4.778 -0.448 H22 CQM 79 CQM H23 H23 H 0 1 N N N -26.111 25.856 -8.046 -0.490 -2.961 -2.878 H23 CQM 80 CQM H24 H24 H 0 1 N N N -24.390 25.991 -8.543 -1.745 -3.648 -3.937 H24 CQM 81 CQM H25 H25 H 0 1 N N N -25.586 25.229 -9.646 -2.112 -3.302 -2.230 H25 CQM 82 CQM H26 H26 H 0 1 N N N -27.094 23.700 -7.432 0.579 -6.488 -3.181 H26 CQM 83 CQM H27 H27 H 0 1 N N N -26.625 23.005 -9.021 0.019 -5.387 -4.464 H27 CQM 84 CQM H28 H28 H 0 1 N N N -26.100 22.205 -7.500 1.140 -4.799 -3.212 H28 CQM 85 CQM H29 H29 H 0 1 N N N -22.992 23.988 -8.679 -2.410 -5.942 -3.783 H29 CQM 86 CQM H30 H30 H 0 1 N N N -23.371 22.171 -7.268 -1.251 -7.516 -1.636 H30 CQM 87 CQM H31 H31 H 0 1 N N N -24.480 21.018 -9.993 -3.692 -3.980 -2.691 H31 CQM 88 CQM H32 H32 H 0 1 N N N -25.178 20.460 -12.089 -5.651 -4.985 -0.923 H32 CQM 89 CQM H33 H33 H 0 1 N N N -24.024 21.723 -12.637 -4.424 -4.119 0.033 H33 CQM 90 CQM H34 H34 H 0 1 N N N -25.758 23.421 -12.531 -4.760 -2.100 -1.366 H34 CQM 91 CQM H35 H35 H 0 1 N N N -26.918 22.243 -11.829 -5.987 -2.966 -2.321 H35 CQM 92 CQM H36 H36 H 0 1 N N N -28.578 21.742 -13.329 -7.103 -0.777 -1.213 H36 CQM 93 CQM H37 H37 H 0 1 N N N -27.662 21.667 -16.174 -9.062 -1.782 0.556 H37 CQM 94 CQM H38 H38 H 0 1 N N N -29.365 21.839 -15.627 -7.835 -0.916 1.512 H38 CQM 95 CQM H39 H39 H 0 1 N N N -28.839 19.628 -16.629 -8.171 1.103 0.113 H39 CQM 96 CQM H40 H40 H 0 1 N N N -27.659 19.347 -15.305 -9.398 0.237 -0.843 H40 CQM 97 CQM H41 H41 H 0 1 N N N -33.720 18.423 -18.195 -10.589 5.378 1.408 H41 CQM 98 CQM H42 H42 H 0 1 N N N -35.545 16.155 -15.517 -14.012 6.876 1.600 H42 CQM 99 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CQM O7 C3 SING N N 1 CQM O3 C4 DOUB N N 2 CQM C6 C3 SING N N 3 CQM C3 C4 SING N N 4 CQM C3 C2 SING N N 5 CQM C4 O4 SING N N 6 CQM O2 C1 DOUB N N 7 CQM C1 C2 SING N N 8 CQM C1 S1P SING N N 9 CQM C2P C3P SING N N 10 CQM C2P S1P SING N N 11 CQM C3P N4P SING N N 12 CQM O5P C5P DOUB N N 13 CQM N4P C5P SING N N 14 CQM C5P C6P SING N N 15 CQM C6P C7P SING N N 16 CQM C7P N8P SING N N 17 CQM N1A C2A SING Y N 18 CQM N1A C6A DOUB Y N 19 CQM N6A C6A SING N N 20 CQM C2A N3A DOUB Y N 21 CQM C6A C5A SING Y N 22 CQM O9P C9P DOUB N N 23 CQM N8P C9P SING N N 24 CQM C9P CAP SING N N 25 CQM N3A C4A SING Y N 26 CQM C5A C4A DOUB Y N 27 CQM C5A N7A SING Y N 28 CQM C4A N9A SING Y N 29 CQM CAP OAP SING N N 30 CQM CAP CBP SING N N 31 CQM CDP CBP SING N N 32 CQM N7A C8A DOUB Y N 33 CQM CEP CBP SING N N 34 CQM CBP CCP SING N N 35 CQM N9A C8A SING Y N 36 CQM N9A C1B SING N N 37 CQM O2B C2B SING N N 38 CQM C1B C2B SING N N 39 CQM C1B O4B SING N N 40 CQM C2B C3B SING N N 41 CQM CCP O6A SING N N 42 CQM O6A P2A SING N N 43 CQM O4B C4B SING N N 44 CQM O3B C3B SING N N 45 CQM O3B P3B SING N N 46 CQM C3B C4B SING N N 47 CQM O5A P2A DOUB N N 48 CQM O7A P3B DOUB N N 49 CQM P2A O3A SING N N 50 CQM P2A O4A SING N N 51 CQM C4B C5B SING N N 52 CQM O3A P1A SING N N 53 CQM P3B O8A SING N N 54 CQM P3B O9A SING N N 55 CQM O5B C5B SING N N 56 CQM O5B P1A SING N N 57 CQM P1A O1A DOUB N N 58 CQM P1A O2A SING N N 59 CQM C2 H1 SING N N 60 CQM C2 H2 SING N N 61 CQM C6 H3 SING N N 62 CQM C6 H4 SING N N 63 CQM C6 H5 SING N N 64 CQM O4A H6 SING N N 65 CQM O2A H7 SING N N 66 CQM C5B H8 SING N N 67 CQM C5B H9 SING N N 68 CQM C4B H10 SING N N 69 CQM C3B H11 SING N N 70 CQM C2B H12 SING N N 71 CQM O2B H13 SING N N 72 CQM C1B H14 SING N N 73 CQM O8A H15 SING N N 74 CQM O9A H16 SING N N 75 CQM C2A H17 SING N N 76 CQM C8A H18 SING N N 77 CQM N6A H19 SING N N 78 CQM N6A H20 SING N N 79 CQM CCP H21 SING N N 80 CQM CCP H22 SING N N 81 CQM CDP H23 SING N N 82 CQM CDP H24 SING N N 83 CQM CDP H25 SING N N 84 CQM CEP H26 SING N N 85 CQM CEP H27 SING N N 86 CQM CEP H28 SING N N 87 CQM CAP H29 SING N N 88 CQM OAP H30 SING N N 89 CQM N8P H31 SING N N 90 CQM C7P H32 SING N N 91 CQM C7P H33 SING N N 92 CQM C6P H34 SING N N 93 CQM C6P H35 SING N N 94 CQM N4P H36 SING N N 95 CQM C3P H37 SING N N 96 CQM C3P H38 SING N N 97 CQM C2P H39 SING N N 98 CQM C2P H40 SING N N 99 CQM O7 H41 SING N N 100 CQM O4 H42 SING N N 101 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CQM SMILES ACDLabs 12.01 "C(C(SCCNC(CCNC(C(C(COP(OP(=O)(O)OCC1OC(C(C1OP(O)(O)=O)O)n2cnc3c2ncnc3N)(O)=O)(C)C)O)=O)=O)=O)C(C(O)=O)(C)O" CQM InChI InChI 1.03 ;InChI=1S/C26H42N7O20P3S/c1-25(2,19(37)22(38)29-5-4-14(34)28-6-7-57-15(35)8-26(3,41)24(39)40)10-50-56(47,48)53-55(45,46)49-9-13-18(52-54(42,43)44)17(36)23(51-13)33-12-32-16-20(27)30-11-31-21(16)33/h11-13,17-19,23,36-37,41H,4-10H2,1-3H3,(H,28,34)(H,29,38)(H,39,40)(H,45,46)(H,47,48)(H2,27,30,31)(H2,42,43,44)/t13-,17-,18-,19+,23-,26+/m1/s1 ; CQM InChIKey InChI 1.03 XYGOWHUIVNMEIA-XBVYHAPZSA-N CQM SMILES_CANONICAL CACTVS 3.385 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)C[C@](C)(O)C(O)=O" CQM SMILES CACTVS 3.385 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCSC(=O)C[C](C)(O)C(O)=O" CQM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@](CC(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)(C(=O)O)O" CQM SMILES "OpenEye OEToolkits" 2.0.6 "CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(=O)CC(C)(C(=O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CQM "SYSTEMATIC NAME" ACDLabs 12.01 ;(3R,5R,9R,21S)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9,21-tetrahydroxy-8,8,21-trimethyl-10,14,19-trioxo-2,4,6-trioxa-18-thia-11,15-diaza-3,5-diphosphadocosan-22-oic acid 3,5-dioxide (non-preferred name) ; CQM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 ;(2~{S})-4-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-2-methyl-2-oxidanyl-4-oxidanylidene-butanoic acid ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CQM "Create component" 2017-09-29 RCSB CQM "Initial release" 2018-08-01 RCSB #