data_CSQ # _chem_comp.id CSQ _chem_comp.name "O-[(2R,3S,4R,5R)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-4-hydroxy-2-(hydroxymethyl)tetrahydrofuran-3-yl] O-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl} hydrogen (R)-phosphorothioate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H24 N5 O12 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-02-28 _chem_comp.pdbx_modified_date 2012-05-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 565.448 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CSQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4DW5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CSQ O1 O1 O 0 1 N N N -45.581 28.718 -13.499 -5.027 3.791 1.459 O1 CSQ 1 CSQ C2 C2 C 0 1 N N N -45.488 28.662 -12.061 -4.371 3.175 0.349 C2 CSQ 2 CSQ C3 C3 C 0 1 N N R -45.864 30.003 -11.433 -3.736 1.858 0.799 C3 CSQ 3 CSQ O4 O4 O 0 1 N N N -44.873 31.058 -11.709 -4.762 0.916 1.154 O4 CSQ 4 CSQ C5 C5 C 0 1 N N S -47.197 30.593 -11.873 -2.927 1.244 -0.360 C5 CSQ 5 CSQ O6 O6 O 0 1 N N N -48.266 29.972 -11.142 -1.553 1.106 0.007 O6 CSQ 6 CSQ C7 C7 C 0 1 N N R -46.947 32.088 -11.581 -3.571 -0.147 -0.577 C7 CSQ 7 CSQ O8 O8 O 0 1 N N N -46.993 32.471 -10.212 -2.573 -1.140 -0.820 O8 CSQ 8 CSQ C9 C9 C 0 1 N N R -45.516 32.260 -12.094 -4.279 -0.393 0.785 C9 CSQ 9 CSQ N10 N10 N 0 1 N N N -45.413 32.470 -13.651 -5.395 -1.329 0.628 N10 CSQ 10 CSQ C11 C11 C 0 1 N N N -46.054 33.558 -14.269 -6.418 -1.020 -0.190 C11 CSQ 11 CSQ N12 N12 N 0 1 N N N -45.964 33.696 -15.616 -7.445 -1.852 -0.350 N12 CSQ 12 CSQ C13 C13 C 0 1 N N N -45.297 32.790 -16.344 -7.485 -3.012 0.294 C13 CSQ 13 CSQ C14 C14 C 0 1 N N N -44.651 31.666 -15.736 -6.428 -3.365 1.157 C14 CSQ 14 CSQ C15 C15 C 0 1 N N N -44.734 31.548 -14.407 -5.389 -2.511 1.306 C15 CSQ 15 CSQ O16 O16 O 0 1 N N N -46.689 34.366 -13.568 -6.405 0.040 -0.793 O16 CSQ 16 CSQ N17 N17 N 0 1 N N N -45.235 32.975 -17.666 -8.551 -3.863 0.120 N17 CSQ 17 CSQ P18 P18 P 0 1 N N R -49.729 30.537 -11.463 -0.353 1.802 -0.810 P18 CSQ 18 CSQ O19 O19 O 0 1 N N N -49.897 30.362 -12.942 -0.600 3.258 -0.906 O19 CSQ 19 CSQ S20 S20 S 0 1 N N N -50.239 31.734 -10.774 -0.252 0.974 -2.759 S20 CSQ 20 CSQ O21 O21 O 0 1 N N N -50.426 29.282 -10.763 1.039 1.543 -0.044 O21 CSQ 21 CSQ C22 C22 C 0 1 N N N -50.263 27.923 -11.185 2.277 2.121 -0.463 C22 CSQ 22 CSQ C23 C23 C 0 1 N N R -50.210 27.011 -9.967 3.395 1.672 0.481 C23 CSQ 23 CSQ O24 O24 O 0 1 N N N -49.149 27.421 -9.035 3.671 0.266 0.300 O24 CSQ 24 CSQ C25 C25 C 0 1 N N S -51.475 26.967 -9.104 4.719 2.383 0.123 C25 CSQ 25 CSQ O26 O26 O 0 1 N N N -51.585 25.690 -8.457 4.935 3.502 0.985 O26 CSQ 26 CSQ C27 C27 C 0 1 N N R -51.182 28.117 -8.132 5.800 1.304 0.356 C27 CSQ 27 CSQ O28 O28 O 0 1 N N N -51.938 28.063 -6.929 6.716 1.724 1.369 O28 CSQ 28 CSQ C29 C29 C 0 1 N N R -49.713 27.826 -7.799 5.001 0.068 0.827 C29 CSQ 29 CSQ N30 N30 N 0 1 N N N -48.896 29.018 -7.170 5.589 -1.158 0.281 N30 CSQ 30 CSQ C31 C31 C 0 1 N N N -48.401 28.904 -5.879 6.077 -2.092 1.117 C31 CSQ 31 CSQ N32 N32 N 0 1 N N N -47.675 30.009 -5.429 6.623 -3.227 0.643 N32 CSQ 32 CSQ C33 C33 C 0 1 N N N -47.424 31.165 -6.151 6.688 -3.447 -0.686 C33 CSQ 33 CSQ C34 C34 C 0 1 N N N -47.975 31.178 -7.491 6.177 -2.472 -1.577 C34 CSQ 34 CSQ C35 C35 C 0 1 N N N -48.675 30.129 -7.957 5.630 -1.344 -1.074 C35 CSQ 35 CSQ O36 O36 O 0 1 N N N -48.597 27.910 -5.192 6.026 -1.907 2.318 O36 CSQ 36 CSQ O37 O37 O 0 1 N N N -46.782 32.096 -5.662 7.181 -4.473 -1.116 O37 CSQ 37 CSQ HO1 HO1 H 0 1 N N N -45.343 27.874 -13.865 -5.453 4.633 1.246 HO1 CSQ 38 CSQ H2 H2 H 0 1 N N N -46.172 27.886 -11.687 -5.098 2.977 -0.439 H2 CSQ 39 CSQ H2A H2A H 0 1 N N N -44.456 28.409 -11.777 -3.596 3.841 -0.031 H2A CSQ 40 CSQ H3 H3 H 0 1 N N N -45.911 29.855 -10.344 -3.083 2.035 1.654 H3 CSQ 41 CSQ H5 H5 H 0 1 N N N -47.326 30.449 -12.956 -3.023 1.853 -1.258 H5 CSQ 42 CSQ H7 H7 H 0 1 N N N -47.632 32.699 -12.187 -4.294 -0.118 -1.392 H7 CSQ 43 CSQ HO8 HO8 H 0 1 N N N -46.828 33.404 -10.138 -2.927 -2.028 -0.962 HO8 CSQ 44 CSQ H9 H9 H 0 1 N N N -45.056 33.125 -11.593 -3.568 -0.762 1.523 H9 CSQ 45 CSQ H14 H14 H 0 1 N N N -44.116 30.940 -16.330 -6.446 -4.305 1.689 H14 CSQ 46 CSQ H15 H15 H 0 1 N N N -44.257 30.711 -13.919 -4.567 -2.760 1.962 H15 CSQ 47 CSQ HN17 HN17 H 0 0 N N N -45.678 33.770 -18.081 -9.277 -3.617 -0.475 HN17 CSQ 48 CSQ HN1A HN1A H 0 0 N N N -44.746 32.319 -18.240 -8.578 -4.710 0.592 HN1A CSQ 49 CSQ HS20 HS20 H 0 0 N N N -50.766 32.406 -11.754 -0.027 -0.331 -2.522 HS20 CSQ 50 CSQ H22 H22 H 0 1 N N N -51.112 27.634 -11.822 2.506 1.795 -1.478 H22 CSQ 51 CSQ H22A H22A H 0 0 N N N -49.327 27.827 -11.755 2.197 3.208 -0.440 H22A CSQ 52 CSQ H23 H23 H 0 1 N N N -50.000 25.989 -10.314 3.122 1.877 1.516 H23 CSQ 53 CSQ H25 H25 H 0 1 N N N -52.363 27.196 -9.712 4.712 2.701 -0.920 H25 CSQ 54 CSQ HO26 HO26 H 0 0 N N N -52.371 25.671 -7.924 5.753 3.986 0.804 HO26 CSQ 55 CSQ H27 H27 H 0 1 N N N -51.278 29.087 -8.641 6.328 1.086 -0.572 H27 CSQ 56 CSQ HO28 HO28 H 0 0 N N N -51.708 28.801 -6.376 7.201 2.531 1.150 HO28 CSQ 57 CSQ H29 H29 H 0 1 N N N -49.683 26.989 -7.086 4.975 0.026 1.916 H29 CSQ 58 CSQ H34 H34 H 0 1 N N N -47.822 32.040 -8.123 6.220 -2.630 -2.644 H34 CSQ 59 CSQ H35 H35 H 0 1 N N N -49.070 30.157 -8.962 5.232 -0.591 -1.738 H35 CSQ 60 CSQ HN32 HN32 H 0 0 N N N -47.303 29.962 -4.502 6.971 -3.890 1.259 HN32 CSQ 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CSQ O1 C2 SING N N 1 CSQ O1 HO1 SING N N 2 CSQ C2 C3 SING N N 3 CSQ C2 H2 SING N N 4 CSQ C2 H2A SING N N 5 CSQ C5 C3 SING N N 6 CSQ O4 C3 SING N N 7 CSQ C3 H3 SING N N 8 CSQ C9 O4 SING N N 9 CSQ C5 C7 SING N N 10 CSQ C5 O6 SING N N 11 CSQ C5 H5 SING N N 12 CSQ P18 O6 SING N N 13 CSQ C9 C7 SING N N 14 CSQ C7 O8 SING N N 15 CSQ C7 H7 SING N N 16 CSQ O8 HO8 SING N N 17 CSQ N10 C9 SING N N 18 CSQ C9 H9 SING N N 19 CSQ C15 N10 SING N N 20 CSQ C11 N10 SING N N 21 CSQ N12 C11 SING N N 22 CSQ C11 O16 DOUB N N 23 CSQ C13 N12 DOUB N N 24 CSQ N17 C13 SING N N 25 CSQ C13 C14 SING N N 26 CSQ C14 C15 DOUB N N 27 CSQ C14 H14 SING N N 28 CSQ C15 H15 SING N N 29 CSQ N17 HN17 SING N N 30 CSQ N17 HN1A SING N N 31 CSQ O19 P18 DOUB N N 32 CSQ P18 S20 SING N N 33 CSQ P18 O21 SING N N 34 CSQ S20 HS20 SING N N 35 CSQ C22 O21 SING N N 36 CSQ C22 C23 SING N N 37 CSQ C22 H22 SING N N 38 CSQ C22 H22A SING N N 39 CSQ C23 C25 SING N N 40 CSQ C23 O24 SING N N 41 CSQ C23 H23 SING N N 42 CSQ O24 C29 SING N N 43 CSQ C25 O26 SING N N 44 CSQ C25 C27 SING N N 45 CSQ C25 H25 SING N N 46 CSQ O26 HO26 SING N N 47 CSQ C27 C29 SING N N 48 CSQ C27 O28 SING N N 49 CSQ C27 H27 SING N N 50 CSQ O28 HO28 SING N N 51 CSQ C29 N30 SING N N 52 CSQ C29 H29 SING N N 53 CSQ C35 N30 SING N N 54 CSQ N30 C31 SING N N 55 CSQ C31 N32 SING N N 56 CSQ C31 O36 DOUB N N 57 CSQ C33 N32 SING N N 58 CSQ C34 C33 SING N N 59 CSQ C33 O37 DOUB N N 60 CSQ C35 C34 DOUB N N 61 CSQ C34 H34 SING N N 62 CSQ C35 H35 SING N N 63 CSQ N32 HN32 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CSQ SMILES ACDLabs 12.01 "O=C1C=CN(C(=O)N1)C2OC(C(O)C2O)COP(=O)(S)OC4C(OC(N3C(=O)N=C(N)C=C3)C4O)CO" CSQ InChI InChI 1.03 "InChI=1S/C18H24N5O12PS/c19-9-1-3-22(17(29)20-9)16-13(28)14(7(5-24)33-16)35-36(31,37)32-6-8-11(26)12(27)15(34-8)23-4-2-10(25)21-18(23)30/h1-4,7-8,11-16,24,26-28H,5-6H2,(H,31,37)(H2,19,20,29)(H,21,25,30)/t7-,8-,11-,12-,13-,14-,15-,16-,36-/m1/s1" CSQ InChIKey InChI 1.03 VZQLNJPTHATNOF-ILIYZMILSA-N CSQ SMILES_CANONICAL CACTVS 3.370 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO)[C@@H](O[P@@](S)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)N4C=CC(=O)NC4=O)[C@H]2O" CSQ SMILES CACTVS 3.370 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO)[CH](O[P](S)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)N4C=CC(=O)NC4=O)[CH]2O" CSQ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O[P@@](=O)(OC[C@@H]3[C@H]([C@H]([C@@H](O3)N4C=CC(=O)NC4=O)O)O)S)O" CSQ SMILES "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)CO)OP(=O)(OCC3C(C(C(O3)N4C=CC(=O)NC4=O)O)O)S)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CSQ "SYSTEMATIC NAME" ACDLabs 12.01 "O-[(2R,3S,4R,5R)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-4-hydroxy-2-(hydroxymethyl)tetrahydrofuran-3-yl] O-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl} hydrogen (R)-phosphorothioate" CSQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "1-[(2R,3R,4S,5R)-5-[[[(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-2-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]oxy-sulfanyl-phosphoryl]oxymethyl]-3,4-bis(oxidanyl)oxolan-2-yl]pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CSQ "Create component" 2012-02-28 RCSB #