data_CTG # _chem_comp.id CTG _chem_comp.name "(5R,6S)-5,6-DIHYDRO-5,6-DIHYDROXYTHYMIDINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H17 N2 O10 P" _chem_comp.mon_nstd_parent_comp_id DT _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-09-13 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 356.223 _chem_comp.one_letter_code T _chem_comp.three_letter_code CTG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CTG P P P 0 1 N N N 54.703 130.735 79.486 -3.968 -1.665 3.118 P CTG 1 CTG OP1 O1P O 0 1 N N N 55.343 132.061 79.289 -4.406 -2.599 4.208 OP1 CTG 2 CTG OP2 O2P O 0 1 N N N 55.269 129.779 80.481 -4.901 -0.360 2.920 OP2 CTG 3 CTG "O5'" O5* O 0 1 N N N 53.172 131.004 79.831 -2.493 -1.028 3.315 "O5'" CTG 4 CTG "C5'" C5* C 0 1 N N N 52.306 131.537 78.830 -2.005 -0.136 2.327 "C5'" CTG 5 CTG "C4'" C4* C 0 1 N N R 50.892 131.674 79.345 -0.611 0.328 2.728 "C4'" CTG 6 CTG "O4'" O4* O 0 1 N N N 50.169 130.427 79.141 0.247 -0.829 2.764 "O4'" CTG 7 CTG "C1'" C1* C 0 1 N N R 49.872 129.815 80.382 1.157 -0.778 1.657 "C1'" CTG 8 CTG N1 N1 N 0 1 N N N 50.241 128.384 80.326 1.164 -2.047 0.989 N1 CTG 9 CTG C6 C6 C 0 1 N N S 51.645 128.034 80.479 0.126 -3.006 1.357 C6 CTG 10 CTG O6 O6 O 0 1 N N N 52.086 128.132 81.841 -1.008 -2.788 0.517 O6 CTG 11 CTG C2 C2 C 0 1 N N N 49.248 127.509 80.703 2.017 -2.285 -0.095 C2 CTG 12 CTG O2 O2 O 0 1 N N N 48.061 127.798 80.685 2.810 -1.457 -0.550 O2 CTG 13 CTG N3 N3 N 0 1 N N N 49.698 126.280 81.103 1.915 -3.568 -0.652 N3 CTG 14 CTG C4 C4 C 0 1 N N N 50.895 125.687 80.756 1.214 -4.666 -0.157 C4 CTG 15 CTG O4 O4 O 0 1 N N N 51.126 124.521 81.066 1.110 -5.728 -0.767 O4 CTG 16 CTG C5 C5 C 0 1 N N R 51.866 126.592 79.975 0.621 -4.447 1.226 C5 CTG 17 CTG C5M C5M C 0 1 N N N 51.588 126.505 78.480 1.678 -4.780 2.284 C5M CTG 18 CTG O5 O5 O 0 1 N N N 53.220 126.194 80.232 -0.480 -5.329 1.400 O5 CTG 19 CTG "C2'" C2* C 0 1 N N N 50.529 130.611 81.511 0.710 0.360 0.754 "C2'" CTG 20 CTG "C3'" C3* C 0 1 N N S 50.845 131.947 80.841 0.008 1.286 1.720 "C3'" CTG 21 CTG "O3'" O3* O 0 1 N N N 50.162 133.131 81.236 0.965 2.121 2.368 "O3'" CTG 22 CTG OP3 O3P O 0 1 N Y N ? ? ? -3.912 -2.311 1.636 OP3 CTG 23 CTG H71 1H5M H 0 1 N N N 50.502 126.484 78.309 2.185 -5.718 2.040 H71 CTG 24 CTG H72 2H5M H 0 1 N N N 52.022 127.381 77.975 2.430 -3.986 2.339 H72 CTG 25 CTG H73 3H5M H 0 1 N N N 52.040 125.587 78.076 1.215 -4.884 3.270 H73 CTG 26 CTG HO5 HO5 H 0 1 N N N 53.686 126.106 79.409 -0.139 -6.230 1.278 HO5 CTG 27 CTG H3 H3 H 0 1 N N N 49.098 125.758 81.709 2.424 -3.718 -1.519 H3 CTG 28 CTG "H1'" H1* H 0 1 N N N 48.793 129.833 80.596 2.163 -0.604 2.054 "H1'" CTG 29 CTG "H2'" 1H2* H 0 1 N N N 49.853 130.735 82.370 -0.003 -0.001 0.003 "H2'" CTG 30 CTG "H2''" 2H2* H 0 0 N N N 51.417 130.116 81.931 1.556 0.818 0.232 "H2''" CTG 31 CTG "H3'" H3* H 0 1 N N N 51.817 132.276 81.237 -0.722 1.941 1.236 "H3'" CTG 32 CTG "HO3'" H3T H 0 0 N Y N 50.010 133.111 82.174 1.769 2.118 1.819 "HO3'" CTG 33 CTG "H4'" H4* H 0 1 N N N 50.445 132.515 78.795 -0.644 0.753 3.736 "H4'" CTG 34 CTG "H5'" 1H5* H 0 1 N N N 52.674 132.530 78.533 -1.971 -0.654 1.366 "H5'" CTG 35 CTG "H5''" 2H5* H 0 0 N N N 52.299 130.848 77.972 -2.683 0.718 2.254 "H5''" CTG 36 CTG HOP3 3HOP H 0 0 N N N ? ? ? -4.684 -2.823 1.313 HOP3 CTG 37 CTG H6 H6 H 0 1 N N N 52.234 128.750 79.887 -0.195 -2.810 2.387 H6 CTG 38 CTG HO6 HO6 H 0 1 N N N 53.035 128.154 81.866 -1.057 -1.832 0.367 HO6 CTG 39 CTG HOP2 2HOP H 0 0 N N N 55.389 128.930 80.072 -5.874 -0.475 2.871 HOP2 CTG 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CTG P "O5'" SING N N 1 CTG P OP1 DOUB N N 2 CTG P OP3 SING N N 3 CTG P OP2 SING N N 4 CTG OP2 HOP2 SING N N 5 CTG "O5'" "C5'" SING N N 6 CTG "C5'" "C4'" SING N N 7 CTG "C5'" "H5'" SING N N 8 CTG "C5'" "H5''" SING N N 9 CTG "C4'" "C3'" SING N N 10 CTG "C4'" "O4'" SING N N 11 CTG "C4'" "H4'" SING N N 12 CTG "O4'" "C1'" SING N N 13 CTG "C1'" N1 SING N N 14 CTG "C1'" "C2'" SING N N 15 CTG "C1'" "H1'" SING N N 16 CTG N1 C2 SING N N 17 CTG N1 C6 SING N N 18 CTG C6 C5 SING N N 19 CTG C6 O6 SING N N 20 CTG C6 H6 SING N N 21 CTG O6 HO6 SING N N 22 CTG C2 N3 SING N N 23 CTG C2 O2 DOUB N N 24 CTG N3 C4 SING N N 25 CTG N3 H3 SING N N 26 CTG C4 C5 SING N N 27 CTG C4 O4 DOUB N N 28 CTG C5 C5M SING N N 29 CTG C5 O5 SING N N 30 CTG C5M H71 SING N N 31 CTG C5M H72 SING N N 32 CTG C5M H73 SING N N 33 CTG O5 HO5 SING N N 34 CTG "C2'" "C3'" SING N N 35 CTG "C2'" "H2'" SING N N 36 CTG "C2'" "H2''" SING N N 37 CTG "C3'" "O3'" SING N N 38 CTG "C3'" "H3'" SING N N 39 CTG "O3'" "HO3'" SING N N 40 CTG OP3 HOP3 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CTG SMILES ACDLabs 10.04 "O=C1N(C(O)C(O)(C(=O)N1)C)C2OC(C(O)C2)COP(=O)(O)O" CTG SMILES_CANONICAL CACTVS 3.341 "C[C@@]1(O)[C@H](O)N([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O" CTG SMILES CACTVS 3.341 "C[C]1(O)[CH](O)N([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O" CTG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@]1([C@@H](N(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O)O)O" CTG SMILES "OpenEye OEToolkits" 1.5.0 "CC1(C(N(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)O)O)O)O" CTG InChI InChI 1.03 "InChI=1S/C10H17N2O10P/c1-10(17)7(14)11-9(16)12(8(10)15)6-2-4(13)5(22-6)3-21-23(18,19)20/h4-6,8,13,15,17H,2-3H2,1H3,(H,11,14,16)(H2,18,19,20)/t4-,5+,6+,8-,10-/m0/s1" CTG InChIKey InChI 1.03 QWAYKDYQHLTLIL-LFOMBHIWSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CTG "SYSTEMATIC NAME" ACDLabs 10.04 ;5,6-dihydroxythymidine 5'-(dihydrogen phosphate) ; CTG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-[(5R,6S)-5,6-dihydroxy-5-methyl-2,4-dioxo-1,3-diazinan-1-yl]-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CTG "Create component" 2006-09-13 PDBJ CTG "Modify descriptor" 2011-06-04 RCSB #