data_CYF # _chem_comp.id CYF _chem_comp.name "5-[2-(2-AMINO-2-CARBAMOYL-ETHYLSULFANYL)-ACETYLAMINO]-2-(3,6-DIHYDROXY-9,9A-DIHYDRO-3H-XANTHEN-9-YL)-BENZOIC ACID" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C25 H23 N3 O7 S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 509.531 _chem_comp.one_letter_code C _chem_comp.three_letter_code CYF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1MPA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CYF C1 C1 C 0 1 Y N N -2.256 5.863 52.204 3.064 0.703 -5.956 C1 CYF 1 CYF O1 O1 O 0 1 N N N -1.623 6.699 52.855 4.024 1.166 -6.799 O1 CYF 2 CYF C2 C2 C 0 1 Y N N -1.564 4.811 51.647 1.842 1.346 -5.881 C2 CYF 3 CYF C3 C3 C 0 1 Y N N -2.227 3.874 50.867 0.849 0.880 -5.019 C3 CYF 4 CYF O2 O2 O 0 1 N N N -1.382 2.827 50.341 -0.311 1.556 -4.970 O2 CYF 5 CYF C4 C4 C 0 1 Y N N -2.130 1.935 49.574 -1.381 0.811 -4.641 C4 CYF 6 CYF C5 C5 C 0 1 Y N N -1.350 0.919 49.081 -2.631 1.218 -5.110 C5 CYF 7 CYF C6 C6 C 0 1 Y N N -1.935 -0.074 48.316 -3.771 0.513 -4.770 C6 CYF 8 CYF O3 O3 O 0 1 N N N -1.256 -1.035 47.919 -4.983 0.919 -5.232 O3 CYF 9 CYF C7 C7 C 0 1 Y N N -3.297 -0.022 48.040 -3.678 -0.607 -3.958 C7 CYF 10 CYF C8 C8 C 0 1 Y N N -4.068 1.010 48.539 -2.443 -1.017 -3.497 C8 CYF 11 CYF C9 C9 C 0 1 Y N N -3.497 1.988 49.310 -1.302 -0.315 -3.842 C9 CYF 12 CYF C10 C10 C 0 1 N N R -4.244 3.001 49.871 0.036 -0.793 -3.340 C10 CYF 13 CYF C11 C11 C 0 1 Y N N -3.604 3.980 50.646 1.104 -0.244 -4.254 C11 CYF 14 CYF C12 C12 C 0 1 Y N N -4.299 5.056 51.219 2.327 -0.884 -4.324 C12 CYF 15 CYF C13 C13 C 0 1 Y N N -3.625 5.988 51.990 3.311 -0.414 -5.171 C13 CYF 16 CYF C14 C14 C 0 1 Y N N -5.656 2.998 49.806 0.261 -0.291 -1.937 C14 CYF 17 CYF C15 C15 C 0 1 Y N N -6.371 2.905 50.999 0.381 1.062 -1.698 C15 CYF 18 CYF C16 C16 C 0 1 Y N N -7.754 2.983 51.002 0.587 1.526 -0.413 C16 CYF 19 CYF C17 C17 C 0 1 Y N N -8.480 3.140 49.831 0.676 0.633 0.647 C17 CYF 20 CYF C18 C18 C 0 1 Y N N -7.784 3.213 48.626 0.563 -0.728 0.418 C18 CYF 21 CYF C19 C19 C 0 1 Y N N -6.375 3.157 48.571 0.349 -1.197 -0.878 C19 CYF 22 CYF C20 C20 C 0 1 N N N -5.787 3.424 47.337 0.221 -2.647 -1.130 C20 CYF 23 CYF O4 O4 O 0 1 N N N -4.635 3.902 47.276 -0.616 -3.057 -1.907 O4 CYF 24 CYF O5 O5 O 0 1 N N N -6.408 3.214 46.261 1.035 -3.515 -0.497 O5 CYF 25 CYF NL NL N 0 1 N N N -9.809 3.179 49.849 0.886 1.109 1.947 NL CYF 26 CYF CL CL C 0 1 N N N -10.886 3.889 49.530 0.352 0.457 2.998 CL CYF 27 CYF OL OL O 0 1 N N N -10.930 4.980 48.967 -0.387 -0.486 2.814 OL CYF 28 CYF CAL CAL C 0 1 N N N -12.172 3.228 49.878 0.674 0.899 4.402 CAL CYF 29 CYF SG SG S 0 1 N N N -12.847 2.495 48.413 -0.190 -0.169 5.586 SG CYF 30 CYF CB CB C 0 1 N N N -13.029 3.939 47.394 0.364 0.573 7.145 CB CYF 31 CYF CA CA C 0 1 N N R -14.380 4.618 47.484 -0.255 -0.185 8.320 CA CYF 32 CYF N N N 0 1 N N N -14.552 5.429 46.304 -1.719 -0.107 8.235 N CYF 33 CYF O O O 0 1 N N N -13.665 6.422 48.886 -0.432 1.329 10.121 O CYF 34 CYF C C C 0 1 N N N -14.439 5.471 48.746 0.206 0.431 9.615 C CYF 35 CYF NT NT N 0 1 N N N -15.327 5.113 49.688 1.329 -0.015 10.212 NT CYF 36 CYF HO1 HO1 H 0 1 N N N -2.100 7.424 53.239 4.550 1.806 -6.299 HO1 CYF 37 CYF HC2 H2 H 0 1 N N N -0.479 4.719 51.825 1.655 2.215 -6.495 HC2 CYF 38 CYF H5 H5 H 0 1 N N N -0.268 0.900 49.296 -2.708 2.089 -5.744 H5 CYF 39 CYF HO3 HO3 H 0 1 N N N -1.657 -1.717 47.393 -5.338 1.536 -4.579 HO3 CYF 40 CYF H7 H7 H 0 1 N N N -3.768 -0.804 47.421 -4.568 -1.156 -3.687 H7 CYF 41 CYF H8 H8 H 0 1 N N N -5.148 1.053 48.320 -2.366 -1.890 -2.866 H8 CYF 42 CYF H10 H10 H 0 1 N N N -4.236 3.413 48.835 0.066 -1.882 -3.351 H10 CYF 43 CYF H12 H12 H 0 1 N N N -5.384 5.170 51.062 2.513 -1.757 -3.715 H12 CYF 44 CYF H13 H13 H 0 1 N N N -4.179 6.831 52.434 4.268 -0.912 -5.222 H13 CYF 45 CYF H15 H15 H 0 1 N N N -5.835 2.767 51.953 0.313 1.761 -2.519 H15 CYF 46 CYF H16 H16 H 0 1 N N N -8.291 2.918 51.962 0.679 2.587 -0.233 H16 CYF 47 CYF H18 H18 H 0 1 N N N -8.362 3.317 47.692 0.633 -1.423 1.242 H18 CYF 48 CYF HO5 HO5 H 0 1 N N N -6.006 3.396 45.419 0.952 -4.464 -0.662 HO5 CYF 49 CYF HNL HNL H 0 1 N N N -10.110 2.341 50.273 1.416 1.909 2.091 HNL CYF 50 CYF HAL3 1HAL H 0 0 N N N -12.063 2.494 50.711 0.351 1.931 4.541 HAL3 CYF 51 CYF HAL2 2HAL H 0 0 N N N -12.887 3.922 50.376 1.749 0.829 4.568 HAL2 CYF 52 CYF HB3 1HB H 0 1 N N N -12.215 4.669 47.612 0.053 1.617 7.181 HB3 CYF 53 CYF HB2 2HB H 0 1 N N N -12.790 3.694 46.332 1.451 0.515 7.208 HB2 CYF 54 CYF HA HA H 0 1 N N N -15.200 3.865 47.539 0.056 -1.229 8.284 HA CYF 55 CYF H 1HN H 0 1 N N N -14.210 6.351 46.280 -1.960 0.871 8.273 H CYF 56 CYF H2 2HN H 0 1 N Y N -14.433 4.898 45.440 -1.974 -0.433 7.315 H2 CYF 57 CYF HNT1 1HNT H 0 0 N N N -15.894 4.331 49.537 1.626 0.381 11.046 HNT1 CYF 58 CYF HNT2 2HNT H 0 0 N N N -15.393 5.643 50.510 1.840 -0.733 9.808 HNT2 CYF 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CYF C1 O1 SING N N 1 CYF C1 C2 DOUB Y N 2 CYF C1 C13 SING Y N 3 CYF O1 HO1 SING N N 4 CYF C2 C3 SING Y N 5 CYF C2 HC2 SING N N 6 CYF C3 O2 SING N N 7 CYF C3 C11 DOUB Y N 8 CYF O2 C4 SING N N 9 CYF C4 C5 DOUB Y N 10 CYF C4 C9 SING Y N 11 CYF C5 C6 SING Y N 12 CYF C5 H5 SING N N 13 CYF C6 O3 SING N N 14 CYF C6 C7 DOUB Y N 15 CYF O3 HO3 SING N N 16 CYF C7 C8 SING Y N 17 CYF C7 H7 SING N N 18 CYF C8 C9 DOUB Y N 19 CYF C8 H8 SING N N 20 CYF C9 C10 SING N N 21 CYF C10 C11 SING N N 22 CYF C10 C14 SING N N 23 CYF C10 H10 SING N N 24 CYF C11 C12 SING Y N 25 CYF C12 C13 DOUB Y N 26 CYF C12 H12 SING N N 27 CYF C13 H13 SING N N 28 CYF C14 C15 DOUB Y N 29 CYF C14 C19 SING Y N 30 CYF C15 C16 SING Y N 31 CYF C15 H15 SING N N 32 CYF C16 C17 DOUB Y N 33 CYF C16 H16 SING N N 34 CYF C17 C18 SING Y N 35 CYF C17 NL SING N N 36 CYF C18 C19 DOUB Y N 37 CYF C18 H18 SING N N 38 CYF C19 C20 SING N N 39 CYF C20 O4 DOUB N N 40 CYF C20 O5 SING N N 41 CYF O5 HO5 SING N N 42 CYF NL CL SING N N 43 CYF NL HNL SING N N 44 CYF CL OL DOUB N N 45 CYF CL CAL SING N N 46 CYF CAL SG SING N N 47 CYF CAL HAL3 SING N N 48 CYF CAL HAL2 SING N N 49 CYF SG CB SING N N 50 CYF CB CA SING N N 51 CYF CB HB3 SING N N 52 CYF CB HB2 SING N N 53 CYF CA N SING N N 54 CYF CA C SING N N 55 CYF CA HA SING N N 56 CYF N H SING N N 57 CYF N H2 SING N N 58 CYF O C DOUB N N 59 CYF C NT SING N N 60 CYF NT HNT1 SING N N 61 CYF NT HNT2 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CYF SMILES ACDLabs 10.04 "O=C(N)C(N)CSCC(=O)Nc1ccc(c(C(=O)O)c1)C3c4c(Oc2c3ccc(O)c2)cc(O)cc4" CYF SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CSCC(=O)Nc1ccc([C@H]2c3ccc(O)cc3Oc4cc(O)ccc24)c(c1)C(O)=O)C(N)=O" CYF SMILES CACTVS 3.341 "N[CH](CSCC(=O)Nc1ccc([CH]2c3ccc(O)cc3Oc4cc(O)ccc24)c(c1)C(O)=O)C(N)=O" CYF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(c(cc1NC(=O)CSC[C@@H](C(=O)N)N)C(=O)O)C2c3ccc(cc3Oc4c2ccc(c4)O)O" CYF SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(c(cc1NC(=O)CSCC(C(=O)N)N)C(=O)O)C2c3ccc(cc3Oc4c2ccc(c4)O)O" CYF InChI InChI 1.03 "InChI=1S/C25H23N3O7S/c26-19(24(27)32)10-36-11-22(31)28-12-1-4-15(18(7-12)25(33)34)23-16-5-2-13(29)8-20(16)35-21-9-14(30)3-6-17(21)23/h1-9,19,23,29-30H,10-11,26H2,(H2,27,32)(H,28,31)(H,33,34)/t19-/m0/s1" CYF InChIKey InChI 1.03 YQXANHSECNNVJK-IBGZPJMESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CYF "SYSTEMATIC NAME" ACDLabs 10.04 "5-[({[(2R)-2,3-diamino-3-oxopropyl]sulfanyl}acetyl)amino]-2-(3,6-dihydroxy-9H-xanthen-9-yl)benzoic acid" CYF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-[2-[(2R)-2,3-diamino-3-oxo-propyl]sulfanylethanoylamino]-2-(3,6-dihydroxy-9H-xanthen-9-yl)benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CYF "Create component" 1999-07-08 RCSB CYF "Modify descriptor" 2011-06-04 RCSB #