data_D2A # _chem_comp.id D2A _chem_comp.name "2-(4'-AMIDINOBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-AMIDINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H18 N6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms DB921 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-09-16 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 354.408 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D2A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2B0K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D2A C1 C1 C 0 1 Y N N 6.946 17.451 15.354 -5.932 -0.600 -1.002 C1 D2A 1 D2A C2 C2 C 0 1 Y N N 7.003 18.262 14.231 -4.556 -0.654 -0.983 C2 D2A 2 D2A C3 C3 C 0 1 Y N N 8.200 18.898 13.835 -3.845 0.015 0.014 C3 D2A 3 D2A C4 C4 C 0 1 Y N N 9.339 18.654 14.636 -4.528 0.744 0.988 C4 D2A 4 D2A C5 C5 C 0 1 Y N N 9.282 17.842 15.759 -5.904 0.804 0.965 C5 D2A 5 D2A C6 C6 C 0 1 Y N N 8.082 17.210 16.159 -6.615 0.134 -0.032 C6 D2A 6 D2A C7 C7 C 0 1 Y N N 8.266 19.720 12.691 -2.365 -0.048 0.038 C7 D2A 7 D2A C8 C8 C 0 1 Y N N 7.154 20.439 12.202 -1.713 -1.245 -0.261 C8 D2A 8 D2A C9 C9 C 0 1 Y N N 7.240 21.241 11.070 -0.338 -1.305 -0.239 C9 D2A 9 D2A C10 C10 C 0 1 Y N N 8.445 21.373 10.356 0.405 -0.167 0.083 C10 D2A 10 D2A C11 C11 C 0 1 Y N N 9.559 20.655 10.838 -0.248 1.031 0.383 C11 D2A 11 D2A C12 C12 C 0 1 Y N N 9.473 19.855 11.967 -1.623 1.090 0.355 C12 D2A 12 D2A C13 C13 C 0 1 Y N N 8.564 22.198 9.177 1.881 -0.231 0.108 C13 D2A 13 D2A N14 N14 N 0 1 Y N N 7.490 22.953 8.658 2.586 -1.233 0.576 N14 D2A 14 D2A C15 C15 C 0 1 Y N N 8.084 23.549 7.564 3.901 -0.969 0.444 C15 D2A 15 D2A C16 C16 C 0 1 Y N N 9.441 23.155 7.453 4.012 0.305 -0.146 C16 D2A 16 D2A N17 N17 N 0 1 Y N N 9.787 22.288 8.469 2.719 0.750 -0.349 N17 D2A 17 D2A C18 C18 C 0 1 Y N N 10.240 23.649 6.401 5.262 0.844 -0.398 C18 D2A 18 D2A C19 C19 C 0 1 Y N N 7.523 24.431 6.629 5.060 -1.683 0.773 C19 D2A 19 D2A C20 C20 C 0 1 Y N N 8.324 24.910 5.595 6.287 -1.147 0.522 C20 D2A 20 D2A C21 C21 C 0 1 Y N N 9.694 24.545 5.439 6.404 0.119 -0.064 C21 D2A 21 D2A C22 C22 C 0 1 N N N 10.477 25.047 4.382 7.743 0.688 -0.331 C22 D2A 22 D2A N23 N23 N 0 1 N N N 10.489 26.334 4.014 8.874 -0.028 -0.002 N23 D2A 23 D2A N24 N24 N 0 1 N N N 11.294 24.281 3.643 7.853 1.866 -0.878 N24 D2A 24 D2A C25 C25 C 0 1 N N N 8.020 16.386 17.300 -8.093 0.198 -0.056 C25 D2A 25 D2A N26 N26 N 0 1 N N N 6.928 16.277 18.072 -8.795 -0.463 -1.041 N26 D2A 26 D2A N27 N27 N 0 1 N N N 9.045 15.636 17.727 -8.731 0.880 0.853 N27 D2A 27 D2A H1 H1 H 0 1 N N N 5.978 16.988 15.611 -6.482 -1.119 -1.774 H1 D2A 28 D2A H2 H2 H 0 1 N N N 6.080 18.403 13.642 -4.027 -1.218 -1.737 H2 D2A 29 D2A H4 H4 H 0 1 N N N 10.307 19.113 14.375 -3.978 1.263 1.759 H4 D2A 30 D2A H5 H5 H 0 1 N N N 10.206 17.696 16.343 -6.432 1.369 1.719 H5 D2A 31 D2A H8 H8 H 0 1 N N N 6.183 20.371 12.722 -2.288 -2.125 -0.511 H8 D2A 32 D2A H9 H9 H 0 1 N N N 6.338 21.780 10.733 0.166 -2.232 -0.470 H9 D2A 33 D2A H11 H11 H 0 1 N N N 10.528 20.721 10.315 0.326 1.911 0.632 H11 D2A 34 D2A H12 H12 H 0 1 N N N 10.378 19.317 12.294 -2.128 2.016 0.586 H12 D2A 35 D2A H17 H17 H 0 1 N N N 10.186 21.398 8.169 2.456 1.597 -0.740 H17 D2A 36 D2A H18 H18 H 0 1 N N N 11.294 23.333 6.330 5.351 1.820 -0.851 H18 D2A 37 D2A H19 H19 H 0 1 N N N 6.467 24.743 6.705 4.981 -2.661 1.226 H19 D2A 38 D2A H20 H20 H 0 1 N N N 7.857 25.602 4.874 7.177 -1.703 0.778 H20 D2A 39 D2A H231 1H23 H 0 0 N N N 11.056 26.697 3.248 8.791 -0.905 0.405 H231 D2A 40 D2A H232 2H23 H 0 0 N N N 10.715 26.882 4.843 9.752 0.345 -0.177 H232 D2A 41 D2A H24 H24 H 0 1 N N N 11.100 23.452 4.204 8.731 2.239 -1.052 H24 D2A 42 D2A H261 1H26 H 0 0 N N N 6.883 15.680 18.898 -8.320 -0.970 -1.718 H261 D2A 43 D2A H262 2H26 H 0 0 N N N 6.152 16.012 17.464 -9.764 -0.424 -1.055 H262 D2A 44 D2A H27 H27 H 0 1 N N N 8.940 14.674 17.402 -9.700 0.922 0.836 H27 D2A 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D2A C1 C2 DOUB Y N 1 D2A C1 C6 SING Y N 2 D2A C1 H1 SING N N 3 D2A C2 C3 SING Y N 4 D2A C2 H2 SING N N 5 D2A C3 C4 DOUB Y N 6 D2A C3 C7 SING Y N 7 D2A C4 C5 SING Y N 8 D2A C4 H4 SING N N 9 D2A C5 C6 DOUB Y N 10 D2A C5 H5 SING N N 11 D2A C6 C25 SING N N 12 D2A C7 C8 DOUB Y N 13 D2A C7 C12 SING Y N 14 D2A C8 C9 SING Y N 15 D2A C8 H8 SING N N 16 D2A C9 C10 DOUB Y N 17 D2A C9 H9 SING N N 18 D2A C10 C11 SING Y N 19 D2A C10 C13 SING Y N 20 D2A C11 C12 DOUB Y N 21 D2A C11 H11 SING N N 22 D2A C12 H12 SING N N 23 D2A C13 N14 DOUB Y N 24 D2A C13 N17 SING Y N 25 D2A N14 C15 SING Y N 26 D2A C15 C16 DOUB Y N 27 D2A C15 C19 SING Y N 28 D2A C16 N17 SING Y N 29 D2A C16 C18 SING Y N 30 D2A N17 H17 SING N N 31 D2A C18 C21 DOUB Y N 32 D2A C18 H18 SING N N 33 D2A C19 C20 DOUB Y N 34 D2A C19 H19 SING N N 35 D2A C20 C21 SING Y N 36 D2A C20 H20 SING N N 37 D2A C21 C22 SING N N 38 D2A C22 N23 SING N N 39 D2A C22 N24 DOUB N E 40 D2A N23 H231 SING N N 41 D2A N23 H232 SING N N 42 D2A N24 H24 SING N N 43 D2A C25 N26 SING N N 44 D2A C25 N27 DOUB N N 45 D2A N26 H261 SING N N 46 D2A N26 H262 SING N N 47 D2A N27 H27 SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D2A SMILES ACDLabs 10.04 "[N@H]=C(N)c1ccc(cc1)c4ccc(c3nc2ccc(cc2n3)C(=[N@H])N)cc4" D2A SMILES_CANONICAL CACTVS 3.341 "NC(=N)c1ccc(cc1)c2ccc(cc2)c3[nH]c4cc(ccc4n3)C(N)=N" D2A SMILES CACTVS 3.341 "NC(=N)c1ccc(cc1)c2ccc(cc2)c3[nH]c4cc(ccc4n3)C(N)=N" D2A SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C(\c1ccc2c(c1)[nH]c(n2)c3ccc(cc3)c4ccc(cc4)C(=N)N)/N" D2A SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C(c1ccc2c(c1)[nH]c(n2)c3ccc(cc3)c4ccc(cc4)C(=N)N)N" D2A InChI InChI 1.03 "InChI=1S/C21H18N6/c22-19(23)14-5-1-12(2-6-14)13-3-7-15(8-4-13)21-26-17-10-9-16(20(24)25)11-18(17)27-21/h1-11H,(H3,22,23)(H3,24,25)(H,26,27)" D2A InChIKey InChI 1.03 MIMVUHYHAXPADM-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D2A "SYSTEMATIC NAME" ACDLabs 10.04 "2-(4'-carbamimidoylbiphenyl-4-yl)-1H-benzimidazole-6-carboximidamide" D2A "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[4-(4-carbamimidoylphenyl)phenyl]-3H-benzimidazole-5-carboximidamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D2A "Create component" 2005-09-16 RCSB D2A "Modify aromatic_flag" 2011-06-04 RCSB D2A "Modify descriptor" 2011-06-04 RCSB D2A "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id D2A _pdbx_chem_comp_synonyms.name DB921 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##