data_D38 # _chem_comp.id D38 _chem_comp.name "N~2~-[(2S)-2-{[1-(4-carboxybenzyl)-1H-1,2,3-triazol-4-yl]methyl}-3-methylbutanoyl]-L-lysine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H31 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-02-02 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 445.512 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D38 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3FXP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D38 C1 C1 C 0 1 Y N N -5.665 46.225 -0.739 6.831 0.336 1.320 C1 D38 1 D38 C2 C2 C 0 1 Y N N -6.001 47.363 -1.486 7.489 0.177 0.099 C2 D38 2 D38 C3 C3 C 0 1 Y N N -7.277 47.915 -1.293 6.909 0.675 -1.069 C3 D38 3 D38 C4 C4 C 0 1 Y N N -8.174 47.335 -0.398 5.691 1.321 -1.010 C4 D38 4 D38 C5 C5 C 0 1 Y N N -7.833 46.197 0.347 5.045 1.475 0.204 C5 D38 5 D38 C6 C6 C 0 1 Y N N -6.557 45.647 0.168 5.614 0.984 1.365 C6 D38 6 D38 C7 C7 C 0 1 N N N -5.078 47.990 -2.510 8.793 -0.515 0.043 C7 D38 7 D38 O8 O8 O 0 1 N N N -5.494 49.067 -3.040 9.295 -0.947 1.061 O8 D38 8 D38 O9 O9 O 0 1 N N N -3.980 47.421 -2.786 9.425 -0.667 -1.137 O9 D38 9 D38 C10 C10 C 0 1 N N N -8.847 45.607 1.295 3.716 2.183 0.262 C10 D38 10 D38 N11 N11 N 0 1 Y N N -8.557 44.223 1.637 2.636 1.208 0.088 N11 D38 11 D38 C12 C12 C 0 1 Y N N -8.986 43.076 1.030 1.595 1.019 0.932 C12 D38 12 D38 C13 C13 C 0 1 Y N N -8.177 42.087 1.550 0.846 0.030 0.391 C13 D38 13 D38 N14 N14 N 0 1 Y N N -7.309 42.663 2.438 1.457 -0.333 -0.742 N14 D38 14 D38 N15 N15 N 0 1 Y N N -7.538 43.971 2.483 2.511 0.388 -0.896 N15 D38 15 D38 C16 C16 C 0 1 N N N -8.004 40.661 1.157 -0.426 -0.549 0.955 C16 D38 16 D38 C17 C17 C 0 1 N N S -8.884 39.576 1.784 -1.544 -0.430 -0.082 C17 D38 17 D38 C18 C18 C 0 1 N N N -9.271 38.320 1.014 -1.225 -1.326 -1.281 C18 D38 18 D38 C19 C19 C 0 1 N N N -9.747 37.156 1.875 -1.267 -2.793 -0.846 C19 D38 19 D38 C20 C20 C 0 1 N N N -8.340 37.832 -0.088 -2.260 -1.091 -2.383 C20 D38 20 D38 C21 C21 C 0 1 N N N -8.906 39.529 3.299 -2.850 -0.862 0.535 C21 D38 21 D38 N22 N22 N 0 1 N N N -10.048 40.081 3.853 -4.010 -0.620 -0.106 N22 D38 22 D38 C23 C23 C 0 1 N N S -10.325 40.091 5.305 -5.285 -0.940 0.541 C23 D38 23 D38 C24 C24 C 0 1 N N N -10.421 38.631 5.837 -5.621 -2.389 0.300 C24 D38 24 D38 O25 O25 O 0 1 N N N -11.245 37.901 5.206 -4.873 -3.083 -0.347 O25 D38 25 D38 O26 O26 O 0 1 N N N -9.685 38.330 6.822 -6.752 -2.909 0.803 O26 D38 26 D38 O27 O27 O 0 1 N N N -8.072 38.958 4.001 -2.856 -1.428 1.607 O27 D38 27 D38 C28 C28 C 0 1 N N N -11.656 40.777 5.616 -6.390 -0.056 -0.041 C28 D38 28 D38 C29 C29 C 0 1 N N N -12.299 40.357 6.940 -6.112 1.406 0.312 C29 D38 29 D38 C30 C30 C 0 1 N N N -11.414 40.813 8.096 -7.217 2.290 -0.271 C30 D38 30 D38 C31 C31 C 0 1 N N N -12.206 41.039 9.378 -6.939 3.753 0.082 C31 D38 31 D38 N32 N32 N 0 1 N N N -11.654 42.253 9.994 -8.000 4.601 -0.477 N32 D38 32 D38 H1 H1 H 0 1 N N N -4.688 45.782 -0.868 7.272 -0.051 2.227 H1 D38 33 D38 H3 H3 H 0 1 N N N -7.566 48.798 -1.844 7.412 0.556 -2.017 H3 D38 34 D38 H4 H4 H 0 1 N N N -9.154 47.772 -0.275 5.241 1.707 -1.912 H4 D38 35 D38 H6 H6 H 0 1 N N N -6.262 44.775 0.732 5.102 1.103 2.309 H6 D38 36 D38 HO9 HO9 H 0 1 N N N -3.520 47.924 -3.448 10.275 -1.127 -1.124 HO9 D38 37 D38 H10 H10 H 0 1 N N N -8.844 46.201 2.221 3.608 2.676 1.227 H10 D38 38 D38 H10A H10A H 0 0 N N N -9.836 45.646 0.815 3.665 2.926 -0.534 H10A D38 39 D38 H12 H12 H 0 1 N N N -9.780 42.968 0.306 1.402 1.550 1.852 H12 D38 40 D38 H16 H16 H 0 1 N N N -8.195 40.619 0.075 -0.269 -1.599 1.202 H16 D38 41 D38 H16A H16A H 0 0 N N N -6.968 40.398 1.415 -0.706 -0.002 1.855 H16A D38 42 D38 H17 H17 H 0 1 N N N -9.846 40.038 1.519 -1.624 0.605 -0.414 H17 D38 43 D38 H18 H18 H 0 1 N N N -10.137 38.726 0.471 -0.231 -1.087 -1.659 H18 D38 44 D38 H19 H19 H 0 1 N N N -10.001 36.302 1.230 -2.275 -3.046 -0.517 H19 D38 45 D38 H19A H19A H 0 0 N N N -8.947 36.864 2.571 -0.988 -3.429 -1.687 H19A D38 46 D38 H19B H19B H 0 0 N N N -10.636 37.462 2.445 -0.567 -2.948 -0.025 H19B D38 47 D38 H20 H20 H 0 1 N N N -8.757 36.922 -0.545 -2.237 -0.045 -2.686 H20 D38 48 D38 H20A H20A H 0 0 N N N -8.239 38.614 -0.855 -2.028 -1.723 -3.240 H20A D38 49 D38 H20B H20B H 0 0 N N N -7.352 37.608 0.340 -3.253 -1.339 -2.007 H20B D38 50 D38 HN22 HN22 H 0 0 N N N -10.721 40.494 3.239 -4.002 -0.233 -0.996 HN22 D38 51 D38 H23 H23 H 0 1 N N N -9.502 40.639 5.788 -5.203 -0.760 1.613 H23 D38 52 D38 HO26 HO26 H 0 0 N N N -9.828 37.421 7.059 -6.925 -3.843 0.621 HO26 D38 53 D38 H28 H28 H 0 1 N N N -11.472 41.861 5.661 -6.412 -0.170 -1.125 H28 D38 54 D38 H28A H28A H 0 0 N N N -12.359 40.527 4.808 -7.352 -0.355 0.375 H28A D38 55 D38 H29 H29 H 0 1 N N N -13.292 40.822 7.031 -6.090 1.520 1.396 H29 D38 56 D38 H29A H29A H 0 0 N N N -12.405 39.262 6.967 -5.150 1.705 -0.105 H29A D38 57 D38 H30 H30 H 0 1 N N N -10.658 40.037 8.285 -7.239 2.176 -1.355 H30 D38 58 D38 H30A H30A H 0 0 N N N -10.930 41.759 7.813 -8.179 1.992 0.146 H30A D38 59 D38 H31 H31 H 0 1 N N N -13.275 41.172 9.153 -6.917 3.867 1.166 H31 D38 60 D38 H31A H31A H 0 0 N N N -12.098 40.179 10.055 -5.977 4.051 -0.334 H31A D38 61 D38 HN32 HN32 H 0 0 N N N -12.142 42.447 10.845 -8.909 4.303 -0.156 HN32 D38 62 D38 HN3A HN3A H 0 0 N N N -10.683 42.115 10.191 -7.839 5.573 -0.257 HN3A D38 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D38 C2 C1 DOUB Y N 1 D38 C1 C6 SING Y N 2 D38 C1 H1 SING N N 3 D38 C7 C2 SING N N 4 D38 C2 C3 SING Y N 5 D38 C3 C4 DOUB Y N 6 D38 C3 H3 SING N N 7 D38 C4 C5 SING Y N 8 D38 C4 H4 SING N N 9 D38 C6 C5 DOUB Y N 10 D38 C5 C10 SING N N 11 D38 C6 H6 SING N N 12 D38 O8 C7 DOUB N N 13 D38 O9 C7 SING N N 14 D38 O9 HO9 SING N N 15 D38 C10 N11 SING N N 16 D38 C10 H10 SING N N 17 D38 C10 H10A SING N N 18 D38 C12 N11 SING Y N 19 D38 N11 N15 SING Y N 20 D38 C12 C13 DOUB Y N 21 D38 C12 H12 SING N N 22 D38 C16 C13 SING N N 23 D38 C13 N14 SING Y N 24 D38 N14 N15 DOUB Y N 25 D38 C16 C17 SING N N 26 D38 C16 H16 SING N N 27 D38 C16 H16A SING N N 28 D38 C18 C17 SING N N 29 D38 C17 C21 SING N N 30 D38 C17 H17 SING N N 31 D38 C20 C18 SING N N 32 D38 C18 C19 SING N N 33 D38 C18 H18 SING N N 34 D38 C19 H19 SING N N 35 D38 C19 H19A SING N N 36 D38 C19 H19B SING N N 37 D38 C20 H20 SING N N 38 D38 C20 H20A SING N N 39 D38 C20 H20B SING N N 40 D38 C21 N22 SING N N 41 D38 C21 O27 DOUB N N 42 D38 N22 C23 SING N N 43 D38 N22 HN22 SING N N 44 D38 C23 C28 SING N N 45 D38 C23 C24 SING N N 46 D38 C23 H23 SING N N 47 D38 O25 C24 DOUB N N 48 D38 C24 O26 SING N N 49 D38 O26 HO26 SING N N 50 D38 C28 C29 SING N N 51 D38 C28 H28 SING N N 52 D38 C28 H28A SING N N 53 D38 C29 C30 SING N N 54 D38 C29 H29 SING N N 55 D38 C29 H29A SING N N 56 D38 C30 C31 SING N N 57 D38 C30 H30 SING N N 58 D38 C30 H30A SING N N 59 D38 C31 N32 SING N N 60 D38 C31 H31 SING N N 61 D38 C31 H31A SING N N 62 D38 N32 HN32 SING N N 63 D38 N32 HN3A SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D38 SMILES ACDLabs 11.02 "O=C(O)C(NC(=O)C(C(C)C)Cc1nnn(c1)Cc2ccc(C(=O)O)cc2)CCCCN" D38 SMILES_CANONICAL CACTVS 3.352 "CC(C)[C@H](Cc1cn(Cc2ccc(cc2)C(O)=O)nn1)C(=O)N[C@@H](CCCCN)C(O)=O" D38 SMILES CACTVS 3.352 "CC(C)[CH](Cc1cn(Cc2ccc(cc2)C(O)=O)nn1)C(=O)N[CH](CCCCN)C(O)=O" D38 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC(C)[C@H](Cc1cn(nn1)Cc2ccc(cc2)C(=O)O)C(=O)N[C@@H](CCCCN)C(=O)O" D38 SMILES "OpenEye OEToolkits" 1.7.0 "CC(C)C(Cc1cn(nn1)Cc2ccc(cc2)C(=O)O)C(=O)NC(CCCCN)C(=O)O" D38 InChI InChI 1.03 "InChI=1S/C22H31N5O5/c1-14(2)18(20(28)24-19(22(31)32)5-3-4-10-23)11-17-13-27(26-25-17)12-15-6-8-16(9-7-15)21(29)30/h6-9,13-14,18-19H,3-5,10-12,23H2,1-2H3,(H,24,28)(H,29,30)(H,31,32)/t18-,19-/m0/s1" D38 InChIKey InChI 1.03 ZFYKXBBWZOQIRM-OALUTQOASA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D38 "SYSTEMATIC NAME" ACDLabs 11.02 "N~2~-[(2S)-2-{[1-(4-carboxybenzyl)-1H-1,2,3-triazol-4-yl]methyl}-3-methylbutanoyl]-L-lysine" D38 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "4-[[4-[(2S)-2-[[(2S)-6-azanyl-1-hydroxy-1-oxo-hexan-2-yl]carbamoyl]-3-methyl-butyl]-1,2,3-triazol-1-yl]methyl]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D38 "Create component" 2009-02-02 RCSB D38 "Modify aromatic_flag" 2011-06-04 RCSB D38 "Modify descriptor" 2011-06-04 RCSB #