data_D5T # _chem_comp.id D5T _chem_comp.name ;1-[2-[4-[(4~{a}~{S},8~{a}~{R})-4-(3,4-dimethoxyphenyl)-1-oxidanylidene-4~{a},5,8,8~{a}-tetrahydrophthalazin-2-yl]piperi din-1-yl]-2-oxidanylidene-ethyl]-4,4-dimethyl-piperidine-2,6-dione ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H38 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms NPD-226 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-12-25 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 550.646 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D5T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6FDI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D5T C1 C1 C 0 1 N N N -22.195 3.095 195.635 6.245 5.406 0.526 C1 D5T 1 D5T O1 O1 O 0 1 N N N -22.616 4.285 194.975 4.915 5.091 0.109 O1 D5T 2 D5T C2 C2 C 0 1 Y N N -22.153 4.494 193.705 4.580 3.775 0.055 C2 D5T 3 D5T C3 C3 C 0 1 Y N N -21.576 3.517 192.916 5.514 2.809 0.398 C3 D5T 4 D5T C4 C4 C 0 1 Y N N -21.134 3.818 191.639 5.180 1.472 0.346 C4 D5T 5 D5T C5 C5 C 0 1 Y N N -21.263 5.105 191.134 3.897 1.088 -0.053 C5 D5T 6 D5T C6 C6 C 0 1 N N N -20.786 5.423 189.763 3.537 -0.340 -0.109 C6 D5T 7 D5T N1 N1 N 0 1 N N N -20.818 6.653 189.391 2.348 -0.704 -0.479 N1 D5T 8 D5T N2 N2 N 0 1 N N N -20.708 6.872 188.063 1.983 -2.056 -0.529 N2 D5T 9 D5T C7 C7 C 0 1 N N N -21.507 8.022 187.551 0.575 -2.442 -0.403 C7 D5T 10 D5T C8 C8 C 0 1 N N N -23.002 7.765 187.692 0.033 -1.964 0.946 C8 D5T 11 D5T C9 C9 C 0 1 N N N -23.809 8.959 187.226 -1.428 -2.400 1.087 C9 D5T 12 D5T N3 N3 N 0 1 N N N -23.374 10.174 187.925 -2.183 -1.910 -0.074 N3 D5T 13 D5T C10 C10 C 0 1 N N N -24.207 10.939 188.668 -3.300 -1.175 0.093 C10 D5T 14 D5T O2 O2 O 0 1 N N N -23.793 11.710 189.528 -3.691 -0.912 1.211 O2 D5T 15 D5T C11 C11 C 0 1 N N N -25.707 10.832 188.421 -4.063 -0.679 -1.108 C11 D5T 16 D5T N4 N4 N 0 1 N N N -26.476 11.478 189.503 -5.228 0.089 -0.664 N4 D5T 17 D5T C12 C12 C 0 1 N N N -27.250 12.573 189.177 -6.386 -0.557 -0.458 C12 D5T 18 D5T O3 O3 O 0 1 N N N -27.615 12.757 188.032 -6.437 -1.755 -0.633 O3 D5T 19 D5T C13 C13 C 0 1 N N N -27.608 13.506 190.295 -7.623 0.178 -0.012 C13 D5T 20 D5T C14 C14 C 0 1 N N N -26.750 13.347 191.559 -7.211 1.404 0.809 C14 D5T 21 D5T C15 C15 C 0 1 N N N -27.363 14.146 192.711 -6.501 0.952 2.087 C15 D5T 22 D5T C16 C16 C 0 1 N N N -25.332 13.855 191.297 -8.453 2.222 1.169 C16 D5T 23 D5T C17 C17 C 0 1 N N N -26.715 11.853 191.916 -6.259 2.259 -0.034 C17 D5T 24 D5T C18 C18 C 0 1 N N N -26.372 10.946 190.772 -5.095 1.410 -0.473 C18 D5T 25 D5T O4 O4 O 0 1 N N N -26.018 9.795 190.936 -4.017 1.932 -0.662 O4 D5T 26 D5T C19 C19 C 0 1 N N N -21.950 10.481 187.743 -1.696 -2.236 -1.421 C19 D5T 27 D5T C20 C20 C 0 1 N N N -21.096 9.326 188.222 -0.232 -1.802 -1.535 C20 D5T 28 D5T C21 C21 C 0 1 N N N -19.945 6.141 187.198 2.936 -3.003 -0.693 C21 D5T 29 D5T O5 O5 O 0 1 N N N -19.785 6.450 186.026 2.639 -4.174 -0.808 O5 D5T 30 D5T C22 C22 C 0 1 N N R -19.330 4.927 187.835 4.374 -2.562 -0.727 C22 D5T 31 D5T C23 C23 C 0 1 N N N -18.819 3.923 186.795 5.326 -3.699 -0.403 C23 D5T 32 D5T C24 C24 C 0 1 N N N -19.899 3.019 186.314 5.328 -4.008 1.063 C24 D5T 33 D5T C25 C25 C 0 1 N N N -21.049 2.873 186.936 4.841 -3.217 1.964 C25 D5T 34 D5T C26 C26 C 0 1 N N N -21.464 3.713 188.092 4.192 -1.901 1.670 C26 D5T 35 D5T C27 C27 C 0 1 N N S -20.288 4.305 188.868 4.555 -1.405 0.259 C27 D5T 36 D5T C28 C28 C 0 1 Y N N -21.842 6.096 191.922 2.956 2.062 -0.398 C28 D5T 37 D5T C29 C29 C 0 1 Y N N -22.287 5.804 193.199 3.297 3.400 -0.338 C29 D5T 38 D5T O6 O6 O 0 1 N N N -22.866 6.722 194.032 2.384 4.350 -0.673 O6 D5T 39 D5T C30 C30 C 0 1 N N N -22.849 8.083 193.615 1.091 3.893 -1.077 C30 D5T 40 D5T H1 H1 H 0 1 N N N -22.639 3.056 196.641 6.411 5.020 1.532 H1 D5T 41 D5T H2 H2 H 0 1 N N N -22.522 2.219 195.056 6.959 4.949 -0.160 H2 D5T 42 D5T H3 H3 H 0 1 N N N -21.098 3.090 195.718 6.380 6.487 0.525 H3 D5T 43 D5T H4 H4 H 0 1 N N N -21.469 2.512 193.298 6.506 3.104 0.707 H4 D5T 44 D5T H5 H5 H 0 1 N N N -20.686 3.046 191.031 5.909 0.721 0.613 H5 D5T 45 D5T H8 H8 H 0 1 N N N -21.293 8.125 186.477 0.490 -3.527 -0.465 H8 D5T 46 D5T H9 H9 H 0 1 N N N -23.234 7.566 188.749 0.623 -2.402 1.751 H9 D5T 47 D5T H10 H10 H 0 1 N N N -23.274 6.889 187.085 0.096 -0.877 0.998 H10 D5T 48 D5T H11 H11 H 0 1 N N N -23.666 9.093 186.144 -1.483 -3.488 1.126 H11 D5T 49 D5T H12 H12 H 0 1 N N N -24.874 8.781 187.436 -1.848 -1.978 2.001 H12 D5T 50 D5T H13 H13 H 0 1 N N N -25.949 11.323 187.467 -3.417 -0.042 -1.712 H13 D5T 51 D5T H14 H14 H 0 1 N N N -25.987 9.769 188.368 -4.394 -1.529 -1.704 H14 D5T 52 D5T H15 H15 H 0 1 N N N -27.495 14.538 189.931 -8.191 0.498 -0.886 H15 D5T 53 D5T H16 H16 H 0 1 N N N -28.658 13.327 190.568 -8.237 -0.482 0.601 H16 D5T 54 D5T H17 H17 H 0 1 N N N -26.743 14.027 193.612 -5.613 0.377 1.825 H17 D5T 55 D5T H18 H18 H 0 1 N N N -27.409 15.210 192.436 -6.209 1.826 2.669 H18 D5T 56 D5T H19 H19 H 0 1 N N N -28.379 13.776 192.914 -7.175 0.331 2.677 H19 D5T 57 D5T H20 H20 H 0 1 N N N -24.726 13.737 192.207 -9.136 1.607 1.754 H20 D5T 58 D5T H21 H21 H 0 1 N N N -24.881 13.276 190.478 -8.158 3.094 1.753 H21 D5T 59 D5T H22 H22 H 0 1 N N N -25.369 14.918 191.017 -8.950 2.548 0.255 H22 D5T 60 D5T H23 H23 H 0 1 N N N -27.707 11.567 192.295 -6.787 2.639 -0.908 H23 D5T 61 D5T H24 H24 H 0 1 N N N -25.965 11.707 192.707 -5.894 3.095 0.563 H24 D5T 62 D5T H25 H25 H 0 1 N N N -21.751 10.661 186.676 -1.773 -3.311 -1.587 H25 D5T 63 D5T H26 H26 H 0 1 N N N -21.697 11.383 188.320 -2.293 -1.706 -2.164 H26 D5T 64 D5T H27 H27 H 0 1 N N N -21.212 9.221 189.311 -0.167 -0.716 -1.459 H27 D5T 65 D5T H28 H28 H 0 1 N N N -20.043 9.536 187.984 0.170 -2.125 -2.496 H28 D5T 66 D5T H29 H29 H 0 1 N N N -18.449 5.272 188.396 4.606 -2.202 -1.730 H29 D5T 67 D5T H30 H30 H 0 1 N N N -18.023 3.315 187.250 5.020 -4.588 -0.955 H30 D5T 68 D5T H31 H31 H 0 1 N N N -18.412 4.477 185.937 6.334 -3.418 -0.710 H31 D5T 69 D5T H32 H32 H 0 1 N N N -19.730 2.455 185.409 5.760 -4.943 1.387 H32 D5T 70 D5T H33 H33 H 0 1 N N N -21.725 2.105 186.590 4.908 -3.526 2.996 H33 D5T 71 D5T H34 H34 H 0 1 N N N -22.085 4.540 187.717 3.110 -2.013 1.742 H34 D5T 72 D5T H35 H35 H 0 1 N N N -22.057 3.091 188.779 4.524 -1.167 2.404 H35 D5T 73 D5T H36 H36 H 0 1 N N N -19.776 3.528 189.455 5.575 -1.020 0.228 H36 D5T 74 D5T H37 H37 H 0 1 N N N -21.944 7.099 191.534 1.963 1.770 -0.707 H37 D5T 75 D5T H38 H38 H 0 1 N N N -23.345 8.706 194.374 0.461 4.751 -1.316 H38 D5T 76 D5T H39 H39 H 0 1 N N N -21.808 8.415 193.491 1.189 3.258 -1.957 H39 D5T 77 D5T H40 H40 H 0 1 N N N -23.381 8.180 192.657 0.637 3.323 -0.266 H40 D5T 78 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D5T O5 C21 DOUB N N 1 D5T C24 C23 SING N N 2 D5T C24 C25 DOUB N N 3 D5T C23 C22 SING N N 4 D5T C25 C26 SING N N 5 D5T C21 C22 SING N N 6 D5T C21 N2 SING N N 7 D5T C9 C8 SING N N 8 D5T C9 N3 SING N N 9 D5T C7 C8 SING N N 10 D5T C7 N2 SING N N 11 D5T C7 C20 SING N N 12 D5T C19 N3 SING N N 13 D5T C19 C20 SING N N 14 D5T C22 C27 SING N N 15 D5T N3 C10 SING N N 16 D5T O3 C12 DOUB N N 17 D5T N2 N1 SING N N 18 D5T C26 C27 SING N N 19 D5T C11 C10 SING N N 20 D5T C11 N4 SING N N 21 D5T C10 O2 DOUB N N 22 D5T C27 C6 SING N N 23 D5T C12 N4 SING N N 24 D5T C12 C13 SING N N 25 D5T N1 C6 DOUB N N 26 D5T N4 C18 SING N N 27 D5T C6 C5 SING N N 28 D5T C13 C14 SING N N 29 D5T C18 O4 DOUB N N 30 D5T C18 C17 SING N N 31 D5T C5 C4 DOUB Y N 32 D5T C5 C28 SING Y N 33 D5T C16 C14 SING N N 34 D5T C14 C17 SING N N 35 D5T C14 C15 SING N N 36 D5T C4 C3 SING Y N 37 D5T C28 C29 DOUB Y N 38 D5T C3 C2 DOUB Y N 39 D5T C29 C2 SING Y N 40 D5T C29 O6 SING N N 41 D5T C30 O6 SING N N 42 D5T C2 O1 SING N N 43 D5T O1 C1 SING N N 44 D5T C1 H1 SING N N 45 D5T C1 H2 SING N N 46 D5T C1 H3 SING N N 47 D5T C3 H4 SING N N 48 D5T C4 H5 SING N N 49 D5T C7 H8 SING N N 50 D5T C8 H9 SING N N 51 D5T C8 H10 SING N N 52 D5T C9 H11 SING N N 53 D5T C9 H12 SING N N 54 D5T C11 H13 SING N N 55 D5T C11 H14 SING N N 56 D5T C13 H15 SING N N 57 D5T C13 H16 SING N N 58 D5T C15 H17 SING N N 59 D5T C15 H18 SING N N 60 D5T C15 H19 SING N N 61 D5T C16 H20 SING N N 62 D5T C16 H21 SING N N 63 D5T C16 H22 SING N N 64 D5T C17 H23 SING N N 65 D5T C17 H24 SING N N 66 D5T C19 H25 SING N N 67 D5T C19 H26 SING N N 68 D5T C20 H27 SING N N 69 D5T C20 H28 SING N N 70 D5T C22 H29 SING N N 71 D5T C23 H30 SING N N 72 D5T C23 H31 SING N N 73 D5T C24 H32 SING N N 74 D5T C25 H33 SING N N 75 D5T C26 H34 SING N N 76 D5T C26 H35 SING N N 77 D5T C27 H36 SING N N 78 D5T C28 H37 SING N N 79 D5T C30 H38 SING N N 80 D5T C30 H39 SING N N 81 D5T C30 H40 SING N N 82 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D5T InChI InChI 1.03 "InChI=1S/C30H38N4O6/c1-30(2)16-25(35)33(26(36)17-30)18-27(37)32-13-11-20(12-14-32)34-29(38)22-8-6-5-7-21(22)28(31-34)19-9-10-23(39-3)24(15-19)40-4/h5-6,9-10,15,20-22H,7-8,11-14,16-18H2,1-4H3/t21-,22+/m0/s1" D5T InChIKey InChI 1.03 DZMHUZHTZIODAZ-FCHUYYIVSA-N D5T SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1OC)C2=NN(C3CCN(CC3)C(=O)CN4C(=O)CC(C)(C)CC4=O)C(=O)[C@@H]5CC=CC[C@H]25" D5T SMILES CACTVS 3.385 "COc1ccc(cc1OC)C2=NN(C3CCN(CC3)C(=O)CN4C(=O)CC(C)(C)CC4=O)C(=O)[CH]5CC=CC[CH]25" D5T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC1(CC(=O)N(C(=O)C1)CC(=O)N2CCC(CC2)N3C(=O)[C@@H]4CC=CC[C@@H]4C(=N3)c5ccc(c(c5)OC)OC)C" D5T SMILES "OpenEye OEToolkits" 2.0.6 "CC1(CC(=O)N(C(=O)C1)CC(=O)N2CCC(CC2)N3C(=O)C4CC=CCC4C(=N3)c5ccc(c(c5)OC)OC)C" # _pdbx_chem_comp_identifier.comp_id D5T _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "1-[2-[4-[(4~{a}~{S},8~{a}~{R})-4-(3,4-dimethoxyphenyl)-1-oxidanylidene-4~{a},5,8,8~{a}-tetrahydrophthalazin-2-yl]piperidin-1-yl]-2-oxidanylidene-ethyl]-4,4-dimethyl-piperidine-2,6-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D5T "Create component" 2017-12-25 RCSB D5T "Initial release" 2019-04-10 RCSB D5T "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id D5T _pdbx_chem_comp_synonyms.name NPD-226 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##