data_D6I # _chem_comp.id D6I _chem_comp.name "6-(benzimidazol-1-yl)-N-[5-[3-(dimethylamino)propoxy]pyridin-2-yl]pyrimidin-4-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H23 N7 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-07-25 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 389.454 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D6I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4BZD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D6I C28 C28 C 0 1 Y N N 15.056 -5.482 9.989 -8.087 2.282 0.036 C28 D6I 1 D6I C27 C27 C 0 1 Y N N 13.855 -6.155 10.016 -6.840 2.889 -0.008 C27 D6I 2 D6I C29 C29 C 0 1 Y N N 15.995 -5.656 10.993 -8.198 0.920 0.064 C29 D6I 3 D6I C26 C26 C 0 1 Y N N 13.554 -7.037 11.043 -5.691 2.125 -0.027 C26 D6I 4 D6I C9 C9 C 0 1 Y N N 8.447 -11.316 9.811 3.175 -2.867 0.143 C9 D6I 5 D6I C10 C10 C 0 1 Y N N 8.955 -11.482 11.081 1.809 -3.076 0.077 C10 D6I 6 D6I C16 C16 C 0 1 Y N N 12.556 -9.435 12.798 -2.656 -1.276 -0.051 C16 D6I 7 D6I C13 C13 C 0 1 Y N N 10.119 -9.671 9.422 2.744 -0.515 -0.005 C13 D6I 8 D6I C19 C19 C 0 1 Y N N 12.613 -9.980 15.404 -1.604 1.191 -0.125 C19 D6I 9 D6I C22 C22 C 0 1 Y N N 15.736 -7.755 13.806 -5.559 -1.459 0.034 C22 D6I 10 D6I C24 C24 C 0 1 Y N N 15.716 -6.540 12.034 -7.048 0.127 0.047 C24 D6I 11 D6I C25 C25 C 0 1 Y N N 14.497 -7.211 12.047 -5.786 0.741 0.001 C25 D6I 12 D6I C8 C8 C 0 1 Y N N 9.047 -10.412 8.962 3.649 -1.558 0.101 C8 D6I 13 D6I C17 C17 C 0 1 Y N N 13.490 -8.866 13.665 -3.474 -0.153 -0.048 C17 D6I 14 D6I C11 C11 C 0 1 Y N N 10.056 -10.720 11.465 0.961 -1.979 -0.029 C11 D6I 15 D6I C15 C15 C 0 1 Y N N 11.609 -10.263 13.406 -1.276 -1.089 -0.093 C15 D6I 16 D6I C1 C1 C 0 1 N N N 8.278 -11.754 2.840 9.440 1.097 -0.966 C1 D6I 17 D6I C3 C3 C 0 1 N N N 9.560 -13.181 4.247 9.258 3.077 0.414 C3 D6I 18 D6I C5 C5 C 0 1 N N N 8.790 -9.762 5.377 6.916 0.144 0.197 C5 D6I 19 D6I C4 C4 C 0 1 N N N 8.500 -11.236 5.171 7.351 1.610 0.145 C4 D6I 20 D6I C6 C6 C 0 1 N N N 9.269 -9.431 6.764 5.390 0.062 0.115 C6 D6I 21 D6I N12 N12 N 0 1 Y N N 10.628 -9.823 10.653 1.447 -0.749 -0.067 N12 D6I 22 D6I N18 N18 N 0 1 Y N N 13.563 -9.152 14.966 -2.914 1.054 -0.086 N18 D6I 23 D6I N20 N20 N 0 1 Y N N 11.631 -10.553 14.711 -0.795 0.152 -0.129 N20 D6I 24 D6I N23 N23 N 0 1 Y N N 16.473 -6.895 13.144 -6.836 -1.215 0.064 N23 D6I 25 D6I N21 N21 N 0 1 Y N N 14.533 -8.021 13.186 -4.861 -0.288 -0.007 N21 D6I 26 D6I N14 N14 N 0 1 N N N 10.588 -10.903 12.727 -0.417 -2.178 -0.097 N14 D6I 27 D6I N2 N2 N 0 1 N N N 9.156 -11.806 3.998 8.816 1.690 0.224 N2 D6I 28 D6I O7 O7 O 0 1 N N N 8.548 -10.248 7.693 4.984 -1.308 0.164 O7 D6I 29 D6I H28 H28 H 0 1 N N N 15.269 -4.808 9.173 -8.978 2.891 0.054 H28 D6I 30 D6I H27 H27 H 0 1 N N N 13.137 -5.994 9.226 -6.768 3.966 -0.030 H27 D6I 31 D6I H29 H29 H 0 1 N N N 16.929 -5.115 10.969 -9.174 0.458 0.099 H29 D6I 32 D6I H26 H26 H 0 1 N N N 12.616 -7.572 11.061 -4.723 2.602 -0.062 H26 D6I 33 D6I H9 H9 H 0 1 N N N 7.590 -11.887 9.485 3.858 -3.699 0.231 H9 D6I 34 D6I H10 H10 H 0 1 N N N 8.509 -12.189 11.765 1.407 -4.078 0.107 H10 D6I 35 D6I H16 H16 H 0 1 N N N 12.565 -9.249 11.734 -3.079 -2.270 -0.017 H16 D6I 36 D6I H13 H13 H 0 1 N N N 10.565 -8.940 8.763 3.105 0.503 -0.038 H13 D6I 37 D6I H19 H19 H 0 1 N N N 12.645 -10.216 16.457 -1.182 2.185 -0.155 H19 D6I 38 D6I H22 H22 H 0 1 N N N 16.039 -8.207 14.739 -5.117 -2.444 0.038 H22 D6I 39 D6I H14 H14 H 0 1 N N N 10.152 -11.637 13.248 -0.776 -3.078 -0.148 H14 D6I 40 D6I H11C H11C H 0 0 N N N 7.975 -10.713 2.655 10.524 1.105 -0.850 H11C D6I 41 D6I H12C H12C H 0 0 N N N 8.810 -12.143 1.959 9.095 0.069 -1.084 H12C D6I 42 D6I H13C H13C H 0 0 N N N 7.385 -12.368 3.029 9.165 1.675 -1.848 H13C D6I 43 D6I H31C H31C H 0 0 N N N 10.224 -13.216 5.123 8.920 3.685 -0.425 H31C D6I 44 D6I H32C H32C H 0 0 N N N 8.668 -13.796 4.438 8.836 3.469 1.340 H32C D6I 45 D6I H33C H33C H 0 0 N N N 10.093 -13.571 3.368 10.346 3.107 0.470 H33C D6I 46 D6I H51C H51C H 0 0 N N N 9.565 -9.456 4.659 7.355 -0.396 -0.642 H51C D6I 47 D6I H52C H52C H 0 0 N N N 7.867 -9.196 5.183 7.254 -0.301 1.133 H52C D6I 48 D6I H41C H41C H 0 0 N N N 8.842 -11.785 6.061 7.013 2.056 -0.791 H41C D6I 49 D6I H42C H42C H 0 0 N N N 7.413 -11.363 5.057 6.912 2.150 0.983 H42C D6I 50 D6I H61C H61C H 0 0 N N N 10.346 -9.637 6.845 4.951 0.601 0.954 H61C D6I 51 D6I H62C H62C H 0 0 N N N 9.082 -8.369 6.979 5.053 0.507 -0.821 H62C D6I 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D6I C28 C27 SING Y N 1 D6I C28 C29 DOUB Y N 2 D6I C27 C26 DOUB Y N 3 D6I C29 C24 SING Y N 4 D6I C26 C25 SING Y N 5 D6I C9 C10 DOUB Y N 6 D6I C9 C8 SING Y N 7 D6I C10 C11 SING Y N 8 D6I C16 C17 DOUB Y N 9 D6I C16 C15 SING Y N 10 D6I C13 C8 DOUB Y N 11 D6I C13 N12 SING Y N 12 D6I C19 N18 DOUB Y N 13 D6I C19 N20 SING Y N 14 D6I C22 N23 DOUB Y N 15 D6I C22 N21 SING Y N 16 D6I C24 C25 DOUB Y N 17 D6I C24 N23 SING Y N 18 D6I C25 N21 SING Y N 19 D6I C8 O7 SING N N 20 D6I C17 N18 SING Y N 21 D6I C17 N21 SING N N 22 D6I C11 N12 DOUB Y N 23 D6I C11 N14 SING N N 24 D6I C15 N20 DOUB Y N 25 D6I C15 N14 SING N N 26 D6I C1 N2 SING N N 27 D6I C3 N2 SING N N 28 D6I C5 C4 SING N N 29 D6I C5 C6 SING N N 30 D6I C4 N2 SING N N 31 D6I C6 O7 SING N N 32 D6I C28 H28 SING N N 33 D6I C27 H27 SING N N 34 D6I C29 H29 SING N N 35 D6I C26 H26 SING N N 36 D6I C9 H9 SING N N 37 D6I C10 H10 SING N N 38 D6I C16 H16 SING N N 39 D6I C13 H13 SING N N 40 D6I C19 H19 SING N N 41 D6I C22 H22 SING N N 42 D6I N14 H14 SING N N 43 D6I C1 H11C SING N N 44 D6I C1 H12C SING N N 45 D6I C1 H13C SING N N 46 D6I C3 H31C SING N N 47 D6I C3 H32C SING N N 48 D6I C3 H33C SING N N 49 D6I C5 H51C SING N N 50 D6I C5 H52C SING N N 51 D6I C4 H41C SING N N 52 D6I C4 H42C SING N N 53 D6I C6 H61C SING N N 54 D6I C6 H62C SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D6I SMILES ACDLabs 12.01 "n2c1ccccc1n(c2)c4ncnc(Nc3ncc(OCCCN(C)C)cc3)c4" D6I InChI InChI 1.03 "InChI=1S/C21H23N7O/c1-27(2)10-5-11-29-16-8-9-19(22-13-16)26-20-12-21(24-14-23-20)28-15-25-17-6-3-4-7-18(17)28/h3-4,6-9,12-15H,5,10-11H2,1-2H3,(H,22,23,24,26)" D6I InChIKey InChI 1.03 VKUXBRRQHBTQPW-UHFFFAOYSA-N D6I SMILES_CANONICAL CACTVS 3.385 "CN(C)CCCOc1ccc(Nc2cc(ncn2)n3cnc4ccccc34)nc1" D6I SMILES CACTVS 3.385 "CN(C)CCCOc1ccc(Nc2cc(ncn2)n3cnc4ccccc34)nc1" D6I SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CN(C)CCCOc1ccc(nc1)Nc2cc(ncn2)n3cnc4c3cccc4" D6I SMILES "OpenEye OEToolkits" 1.9.2 "CN(C)CCCOc1ccc(nc1)Nc2cc(ncn2)n3cnc4c3cccc4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D6I "SYSTEMATIC NAME" ACDLabs 12.01 "6-(1H-benzimidazol-1-yl)-N-{5-[3-(dimethylamino)propoxy]pyridin-2-yl}pyrimidin-4-amine" D6I "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "6-(benzimidazol-1-yl)-N-[5-[3-(dimethylamino)propoxy]pyridin-2-yl]pyrimidin-4-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D6I "Create component" 2013-07-25 EBI D6I "Initial release" 2014-08-13 RCSB D6I "Modify descriptor" 2014-09-05 RCSB #