data_D98 # _chem_comp.id D98 _chem_comp.name "2-(4'-CARBAMIMIDOYL-2'-HYDROXYBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-CARBOXIMIDAMIDE" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H18 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-02-02 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 370.407 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D98 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4AGZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D98 C1 C1 C 0 1 Y N N 7.091 17.265 15.235 5.802 -0.778 0.580 C1 D98 1 D98 C2 C2 C 0 1 Y N N 7.092 18.077 14.122 4.422 -0.867 0.566 C2 D98 2 D98 C3 C3 C 0 1 Y N N 8.157 18.869 13.715 3.666 0.125 -0.070 C3 D98 3 D98 C4 C4 C 0 1 Y N N 9.351 18.870 14.410 4.306 1.200 -0.688 C4 D98 4 D98 C5 C5 C 0 1 Y N N 9.344 18.019 15.561 5.679 1.287 -0.672 C5 D98 5 D98 C6 C6 C 0 1 Y N N 8.240 17.206 16.011 6.437 0.299 -0.039 C6 D98 6 D98 C7 C7 C 0 1 Y N N 8.049 19.713 12.578 2.188 0.033 -0.088 C7 D98 7 D98 C8 C8 C 0 1 Y N N 9.179 19.936 11.859 1.416 1.131 0.294 C8 D98 8 D98 C9 C9 C 0 1 Y N N 9.252 20.782 10.764 0.042 1.046 0.277 C9 D98 9 D98 C10 C10 C 0 1 Y N N 8.135 21.405 10.352 -0.580 -0.140 -0.122 C10 D98 10 D98 C11 C11 C 0 1 Y N N 6.949 21.227 11.025 0.194 -1.238 -0.504 C11 D98 11 D98 C12 C12 C 0 1 Y N N 6.886 20.368 12.155 1.567 -1.151 -0.492 C12 D98 12 D98 C13 C13 C 0 1 Y N N 8.334 22.224 9.177 -2.055 -0.232 -0.140 C13 D98 13 D98 N14 N14 N 0 1 Y N N 7.511 23.089 8.579 -2.770 -1.339 -0.511 N14 D98 14 D98 C15 C15 C 0 1 Y N N 8.122 23.653 7.500 -4.107 -1.022 -0.390 C15 D98 15 D98 C16 C16 C 0 1 Y N N 9.431 23.149 7.423 -4.155 0.310 0.065 C16 D98 16 D98 N17 N17 N 0 1 Y N N 9.483 22.286 8.470 -2.874 0.732 0.203 N17 D98 17 D98 C18 C18 C 0 1 Y N N 10.283 23.560 6.344 -5.392 0.917 0.284 C18 D98 18 D98 C19 C19 C 0 1 Y N N 7.654 24.581 6.610 -5.285 -1.723 -0.618 C19 D98 19 D98 C20 C20 C 0 1 Y N N 8.494 24.969 5.613 -6.493 -1.124 -0.402 C20 D98 20 D98 C21 C21 C 0 1 Y N N 9.761 24.517 5.455 -6.559 0.199 0.050 C21 D98 21 D98 C22 C22 C 0 1 N N N 10.414 25.084 4.331 -7.875 0.835 0.280 C22 D98 22 D98 N24 N24 N 0 1 N N N 11.251 24.307 3.664 -9.033 0.125 0.049 N24 D98 23 D98 N23 N23 N 0 1 N N N 10.297 26.364 3.933 -7.939 2.066 0.701 N23 D98 24 D98 C25 C25 C 0 1 N N N 8.228 16.368 17.167 7.913 0.395 -0.024 C25 D98 25 D98 N26 N26 N 0 1 N N N 9.325 15.778 17.670 8.620 -0.526 0.567 N26 D98 26 D98 N27 N27 N 0 1 N N N 7.093 16.195 17.886 8.541 1.459 -0.635 N27 D98 27 D98 OAE OAE O 0 1 N N N 5.887 18.064 13.406 3.801 -1.915 1.167 OAE D98 28 D98 H1 H1 H 0 1 N N N 6.217 16.688 15.497 6.387 -1.539 1.074 H1 D98 29 D98 HAE HAE H 0 1 N N N 5.958 18.642 12.656 3.584 -1.762 2.097 HAE D98 30 D98 H4 H4 H 0 1 N N N 10.208 19.457 14.113 3.722 1.965 -1.178 H4 D98 31 D98 H5 H5 H 0 1 N N N 10.250 17.982 16.148 6.173 2.120 -1.151 H5 D98 32 D98 H8 H8 H 0 1 N N N 10.079 19.421 12.160 1.896 2.048 0.603 H8 D98 33 D98 H12 H12 H 0 1 N N N 5.954 20.222 12.680 2.165 -1.999 -0.791 H12 D98 34 D98 H9 H9 H 0 1 N N N 10.190 20.938 10.251 -0.556 1.896 0.573 H9 D98 35 D98 H11 H11 H 0 1 N N N 6.060 21.743 10.693 -0.286 -2.155 -0.812 H11 D98 36 D98 H14 H14 H 0 1 N N N 6.580 23.293 8.880 -2.405 -2.188 -0.805 H14 D98 37 D98 H19 H19 H 0 1 N N N 6.658 24.989 6.696 -5.245 -2.744 -0.968 H19 D98 38 D98 H18 H18 H 0 1 N N N 11.276 23.154 6.221 -5.443 1.938 0.633 H18 D98 39 D98 H20 H20 H 0 1 N N N 8.125 25.688 4.897 -7.404 -1.675 -0.582 H20 D98 40 D98 H23 H23 H 0 1 N N N 10.885 26.568 3.150 -8.802 2.483 0.852 H23 D98 41 D98 H241 H241 H 0 0 N N N 11.770 24.677 2.893 -8.986 -0.792 -0.265 H241 D98 42 D98 H242 H242 H 0 0 N N N 11.365 23.350 3.930 -9.896 0.542 0.199 H242 D98 43 D98 H26 H26 H 0 1 N N N 9.131 15.289 18.520 9.588 -0.464 0.577 H26 D98 44 D98 H271 H271 H 0 0 N N N 7.112 15.657 18.729 8.015 2.145 -1.075 H271 D98 45 D98 H272 H272 H 0 0 N N N 6.236 16.605 17.574 9.509 1.522 -0.625 H272 D98 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D98 C1 C2 SING Y N 1 D98 C1 C6 DOUB Y N 2 D98 C2 C3 DOUB Y N 3 D98 C2 OAE SING N N 4 D98 C3 C4 SING Y N 5 D98 C3 C7 SING N N 6 D98 C4 C5 DOUB Y N 7 D98 C5 C6 SING Y N 8 D98 C6 C25 SING N N 9 D98 C7 C8 SING Y N 10 D98 C7 C12 DOUB Y N 11 D98 C8 C9 DOUB Y N 12 D98 C9 C10 SING Y N 13 D98 C10 C11 DOUB Y N 14 D98 C10 C13 SING N N 15 D98 C11 C12 SING Y N 16 D98 C13 N14 SING Y N 17 D98 C13 N17 DOUB Y N 18 D98 N14 C15 SING Y N 19 D98 C15 C16 SING Y N 20 D98 C15 C19 DOUB Y N 21 D98 C16 N17 SING Y N 22 D98 C16 C18 DOUB Y N 23 D98 C18 C21 SING Y N 24 D98 C19 C20 SING Y N 25 D98 C20 C21 DOUB Y N 26 D98 C21 C22 SING N N 27 D98 C22 N23 DOUB N N 28 D98 C22 N24 SING N N 29 D98 C25 N26 DOUB N N 30 D98 C25 N27 SING N N 31 D98 C1 H1 SING N N 32 D98 OAE HAE SING N N 33 D98 C4 H4 SING N N 34 D98 C5 H5 SING N N 35 D98 C8 H8 SING N N 36 D98 C12 H12 SING N N 37 D98 C9 H9 SING N N 38 D98 C11 H11 SING N N 39 D98 N14 H14 SING N N 40 D98 C19 H19 SING N N 41 D98 C18 H18 SING N N 42 D98 C20 H20 SING N N 43 D98 N23 H23 SING N N 44 D98 N24 H241 SING N N 45 D98 N24 H242 SING N N 46 D98 N26 H26 SING N N 47 D98 N27 H271 SING N N 48 D98 N27 H272 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D98 SMILES ACDLabs 12.01 "n2c1cc(ccc1nc2c4ccc(c3ccc(C(=[N@H])N)cc3O)cc4)C(=[N@H])N" D98 InChI InChI 1.03 "InChI=1S/C21H18N6O/c22-19(23)13-6-8-16-17(9-13)27-21(26-16)12-3-1-11(2-4-12)15-7-5-14(20(24)25)10-18(15)28/h1-10,28H,(H3,22,23)(H3,24,25)(H,26,27)" D98 InChIKey InChI 1.03 VYJOWVQQJBILOA-UHFFFAOYSA-N D98 SMILES_CANONICAL CACTVS 3.385 "NC(=N)c1ccc(c(O)c1)c2ccc(cc2)c3[nH]c4ccc(cc4n3)C(N)=N" D98 SMILES CACTVS 3.385 "NC(=N)c1ccc(c(O)c1)c2ccc(cc2)c3[nH]c4ccc(cc4n3)C(N)=N" D98 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "[H]/N=C(/c1ccc2c(c1)nc([nH]2)c3ccc(cc3)c4ccc(cc4O)/C(=N/[H])/N)\N" D98 SMILES "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1c2ccc(cc2O)C(=N)N)c3[nH]c4ccc(cc4n3)C(=N)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D98 "SYSTEMATIC NAME" ACDLabs 12.01 "2-(4'-carbamimidoyl-2'-hydroxybiphenyl-4-yl)-1H-benzimidazole-5-carboximidamide" D98 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-[4-(4-carbamimidoyl-2-oxidanyl-phenyl)phenyl]-1H-benzimidazole-5-carboximidamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D98 "Create component" 2012-02-02 EBI D98 "Initial release" 2013-01-11 RCSB D98 "Modify descriptor" 2014-09-05 RCSB #