data_DDG # _chem_comp.id DDG _chem_comp.name "2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H14 N5 O6 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 331.222 _chem_comp.one_letter_code G _chem_comp.three_letter_code DDG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1QSS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DDG OP3 O3P O 0 1 N Y N 1.230 30.646 -6.035 -0.978 -1.712 5.736 OP3 DDG 1 DDG P P P 0 1 N N N 0.613 29.229 -5.594 -0.499 -0.349 5.025 P DDG 2 DDG OP1 O1P O 0 1 N N N 0.843 28.248 -6.683 -1.679 0.493 4.730 OP1 DDG 3 DDG OP2 O2P O 0 1 N N N 1.163 28.965 -4.244 0.497 0.446 6.006 OP2 DDG 4 DDG "O5'" O5* O 0 1 N N N -0.967 29.472 -5.492 0.265 -0.700 3.652 "O5'" DDG 5 DDG "C5'" C5* C 0 1 N N N -1.466 30.421 -4.563 0.663 0.543 3.071 "C5'" DDG 6 DDG "C4'" C4* C 0 1 N N S -2.974 30.429 -4.564 1.400 0.279 1.757 "C4'" DDG 7 DDG "O4'" O4* O 0 1 N N N -3.475 31.155 -5.716 0.508 -0.298 0.776 "O4'" DDG 8 DDG "C3'" C3* C 0 1 N N N -3.649 29.072 -4.637 1.844 1.612 1.103 "C3'" DDG 9 DDG "C2'" C2* C 0 1 N N N -5.018 29.427 -5.207 1.957 1.220 -0.389 "C2'" DDG 10 DDG "C1'" C1* C 0 1 N N R -4.667 30.546 -6.185 1.087 -0.045 -0.514 "C1'" DDG 11 DDG N9 N9 N 0 1 Y N N -4.433 30.025 -7.529 0.027 0.173 -1.501 N9 DDG 12 DDG C8 C8 C 0 1 Y N N -3.243 29.597 -8.072 -1.216 0.675 -1.251 C8 DDG 13 DDG N7 N7 N 0 1 Y N N -3.367 29.153 -9.290 -1.898 0.734 -2.357 N7 DDG 14 DDG C5 C5 C 0 1 Y N N -4.715 29.312 -9.576 -1.136 0.275 -3.380 C5 DDG 15 DDG C6 C6 C 0 1 N N N -5.444 29.019 -10.757 -1.346 0.110 -4.769 C6 DDG 16 DDG O6 O6 O 0 1 N N N -5.030 28.550 -11.823 -2.411 0.413 -5.280 O6 DDG 17 DDG N1 N1 N 0 1 N N N -6.793 29.332 -10.613 -0.336 -0.386 -5.516 N1 DDG 18 DDG C2 C2 C 0 1 N N N -7.367 29.864 -9.477 0.847 -0.727 -4.933 C2 DDG 19 DDG N2 N2 N 0 1 N N N -8.691 30.100 -9.528 1.854 -1.235 -5.717 N2 DDG 20 DDG N3 N3 N 0 1 N N N -6.697 30.145 -8.377 1.055 -0.579 -3.644 N3 DDG 21 DDG C4 C4 C 0 1 Y N N -5.385 29.847 -8.497 0.103 -0.088 -2.842 C4 DDG 22 DDG HOP3 3HOP H 0 0 N N N 1.082 31.274 -5.337 -1.430 -1.458 6.552 HOP3 DDG 23 DDG HOP2 2HOP H 0 0 N N N 0.798 28.127 -3.983 1.250 -0.137 6.173 HOP2 DDG 24 DDG "H5'" 1H5* H 0 1 N N N -1.054 30.252 -3.540 1.324 1.070 3.759 "H5'" DDG 25 DDG "H5''" 2H5* H 0 0 N N N -1.047 31.438 -4.747 -0.219 1.152 2.878 "H5''" DDG 26 DDG "H4'" H4* H 0 1 N N N -3.219 30.895 -3.581 2.258 -0.371 1.923 "H4'" DDG 27 DDG "H3'1" 1H3* H 0 0 N N N -3.087 28.295 -5.207 2.809 1.935 1.495 "H3'1" DDG 28 DDG "H3'2" 2H3* H 0 0 N N N -3.670 28.503 -3.678 1.089 2.386 1.246 "H3'2" DDG 29 DDG "H2'" 1H2* H 0 1 N N N -5.584 28.573 -5.647 2.993 0.998 -0.648 "H2'" DDG 30 DDG "H2''" 2H2* H 0 0 N N N -5.794 29.685 -4.449 1.566 2.015 -1.023 "H2''" DDG 31 DDG "H1'" H1* H 0 1 N N N -5.512 31.270 -6.240 1.705 -0.891 -0.815 "H1'" DDG 32 DDG H8 H8 H 0 1 N N N -2.261 29.608 -7.568 -1.580 0.979 -0.281 H8 DDG 33 DDG H1 H1 H 0 1 N N N -7.411 29.157 -11.404 -0.457 -0.508 -6.471 H1 DDG 34 DDG H21 1H2 H 0 1 N N N -9.115 30.493 -8.688 2.703 -1.478 -5.317 H21 DDG 35 DDG H22 2H2 H 0 1 N N N -9.182 29.246 -9.793 1.714 -1.354 -6.669 H22 DDG 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DDG OP3 P SING N N 1 DDG OP3 HOP3 SING N N 2 DDG P OP1 DOUB N N 3 DDG P OP2 SING N N 4 DDG P "O5'" SING N N 5 DDG OP2 HOP2 SING N N 6 DDG "O5'" "C5'" SING N N 7 DDG "C5'" "C4'" SING N N 8 DDG "C5'" "H5'" SING N N 9 DDG "C5'" "H5''" SING N N 10 DDG "C4'" "O4'" SING N N 11 DDG "C4'" "C3'" SING N N 12 DDG "C4'" "H4'" SING N N 13 DDG "O4'" "C1'" SING N N 14 DDG "C3'" "C2'" SING N N 15 DDG "C3'" "H3'1" SING N N 16 DDG "C3'" "H3'2" SING N N 17 DDG "C2'" "C1'" SING N N 18 DDG "C2'" "H2'" SING N N 19 DDG "C2'" "H2''" SING N N 20 DDG "C1'" N9 SING N N 21 DDG "C1'" "H1'" SING N N 22 DDG N9 C8 SING Y N 23 DDG N9 C4 SING Y N 24 DDG C8 N7 DOUB Y N 25 DDG C8 H8 SING N N 26 DDG N7 C5 SING Y N 27 DDG C5 C6 SING N N 28 DDG C5 C4 DOUB Y N 29 DDG C6 O6 DOUB N N 30 DDG C6 N1 SING N N 31 DDG N1 C2 SING N N 32 DDG N1 H1 SING N N 33 DDG C2 N2 SING N N 34 DDG C2 N3 DOUB N N 35 DDG N2 H21 SING N N 36 DDG N2 H22 SING N N 37 DDG N3 C4 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DDG SMILES ACDLabs 10.04 "O=C1c2ncn(c2N=C(N)N1)C3OC(CC3)COP(=O)(O)O" DDG SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3CC[C@@H](CO[P](O)(O)=O)O3" DDG SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3CC[CH](CO[P](O)(O)=O)O3" DDG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3CC[C@H](O3)COP(=O)(O)O)N=C(NC2=O)N" DDG SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3CCC(O3)COP(=O)(O)O)N=C(NC2=O)N" DDG InChI InChI 1.03 "InChI=1S/C10H14N5O6P/c11-10-13-8-7(9(16)14-10)12-4-15(8)6-2-1-5(21-6)3-20-22(17,18)19/h4-6H,1-3H2,(H2,17,18,19)(H3,11,13,14,16)/t5-,6+/m0/s1" DDG InChIKey InChI 1.03 SDMRBYKCQICSIT-NTSWFWBYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DDG "SYSTEMATIC NAME" ACDLabs 10.04 "[(2S,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)tetrahydrofuran-2-yl]methyl dihydrogen phosphate" DDG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DDG "Create component" 1999-07-08 RCSB DDG "Modify descriptor" 2011-06-04 RCSB #