data_DDK # _chem_comp.id DDK _chem_comp.name "(2R)-7-amino-2-(selanylmethyl)heptanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H17 N O2 Se" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-06-13 _chem_comp.pdbx_modified_date 2013-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 238.186 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DDK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3WC5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DDK OAB OAB O 0 1 N N N 4.826 -17.699 3.780 1.235 -2.878 0.307 OAB DDK 1 DDK CAK CAK C 0 1 N N N 3.899 -18.482 3.393 1.606 -1.802 -0.099 CAK DDK 2 DDK OAC OAC O 0 1 N N N 2.744 -18.541 3.953 2.904 -1.601 -0.377 OAC DDK 3 DDK CAL CAL C 0 1 N N R 4.195 -19.306 2.157 0.611 -0.688 -0.300 CAL DDK 4 DDK CAF CAF C 0 1 N N N 5.471 -20.122 2.403 0.993 0.502 0.583 CAF DDK 5 DDK SED SED SE 0 0 N N N 5.245 -21.338 3.953 2.713 1.230 -0.011 SED DDK 6 DDK CAJ CAJ C 0 1 N N N 4.441 -18.375 0.964 -0.787 -1.178 0.082 CAJ DDK 7 DDK CAI CAI C 0 1 N N N 3.207 -17.547 0.519 -1.814 -0.090 -0.239 CAI DDK 8 DDK CAH CAH C 0 1 N N N 3.380 -16.954 -0.911 -3.212 -0.581 0.142 CAH DDK 9 DDK CAG CAG C 0 1 N N N 4.671 -16.086 -1.091 -4.239 0.507 -0.179 CAG DDK 10 DDK CAE CAE C 0 1 N N N 4.706 -15.231 0.158 -5.638 0.017 0.203 CAE DDK 11 DDK NAA NAA N 0 1 N N N 5.245 -13.935 -0.130 -6.624 1.062 -0.105 NAA DDK 12 DDK H1 H1 H 0 1 N N N 2.709 -17.923 4.674 3.503 -2.346 -0.236 H1 DDK 13 DDK H2 H2 H 0 1 N N N 3.354 -19.981 1.940 0.616 -0.381 -1.346 H2 DDK 14 DDK H3 H3 H 0 1 N N N 5.695 -20.719 1.507 0.226 1.273 0.505 H3 DDK 15 DDK H4 H4 H 0 1 N N N 6.305 -19.434 2.604 1.075 0.174 1.619 H4 DDK 16 DDK H5 H5 H 0 1 N N N 6.474 -22.098 4.159 2.904 2.403 1.000 H5 DDK 17 DDK H6 H6 H 0 1 N N N 4.766 -18.990 0.112 -1.023 -2.079 -0.485 H6 DDK 18 DDK H7 H7 H 0 1 N N N 5.243 -17.674 1.237 -0.816 -1.401 1.148 H7 DDK 19 DDK H8 H8 H 0 1 N N N 3.060 -16.720 1.230 -1.578 0.811 0.327 H8 DDK 20 DDK H9 H9 H 0 1 N N N 2.321 -18.199 0.527 -1.786 0.133 -1.306 H9 DDK 21 DDK H10 H10 H 0 1 N N N 2.506 -16.323 -1.132 -3.449 -1.482 -0.424 H10 DDK 22 DDK H11 H11 H 0 1 N N N 3.421 -17.787 -1.628 -3.241 -0.804 1.209 H11 DDK 23 DDK H12 H12 H 0 1 N N N 5.566 -16.723 -1.156 -4.003 1.408 0.387 H12 DDK 24 DDK H13 H13 H 0 1 N N N 4.600 -15.460 -1.993 -4.211 0.730 -1.245 H13 DDK 25 DDK H14 H14 H 0 1 N N N 3.683 -15.118 0.547 -5.874 -0.884 -0.363 H14 DDK 26 DDK H15 H15 H 0 1 N N N 5.334 -15.723 0.915 -5.666 -0.206 1.269 H15 DDK 27 DDK H16 H16 H 0 1 N N N 5.260 -13.386 0.706 -6.572 1.332 -1.076 H16 DDK 28 DDK H17 H17 H 0 1 N N N 6.176 -14.032 -0.481 -7.556 0.762 0.138 H17 DDK 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DDK CAG CAH SING N N 1 DDK CAG CAE SING N N 2 DDK CAH CAI SING N N 3 DDK NAA CAE SING N N 4 DDK CAI CAJ SING N N 5 DDK CAJ CAL SING N N 6 DDK CAL CAF SING N N 7 DDK CAL CAK SING N N 8 DDK CAF SED SING N N 9 DDK CAK OAB DOUB N N 10 DDK CAK OAC SING N N 11 DDK OAC H1 SING N N 12 DDK CAL H2 SING N N 13 DDK CAF H3 SING N N 14 DDK CAF H4 SING N N 15 DDK SED H5 SING N N 16 DDK CAJ H6 SING N N 17 DDK CAJ H7 SING N N 18 DDK CAI H8 SING N N 19 DDK CAI H9 SING N N 20 DDK CAH H10 SING N N 21 DDK CAH H11 SING N N 22 DDK CAG H12 SING N N 23 DDK CAG H13 SING N N 24 DDK CAE H14 SING N N 25 DDK CAE H15 SING N N 26 DDK NAA H16 SING N N 27 DDK NAA H17 SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DDK SMILES ACDLabs 12.01 "O=C(O)C(CCCCCN)C[SeH]" DDK InChI InChI 1.03 "InChI=1S/C8H17NO2Se/c9-5-3-1-2-4-7(6-12)8(10)11/h7,12H,1-6,9H2,(H,10,11)/t7-/m0/s1" DDK InChIKey InChI 1.03 PKYDFIWWGOFUJY-ZETCQYMHSA-N DDK SMILES_CANONICAL CACTVS 3.370 "NCCCCC[C@@H](C[SeH])C(O)=O" DDK SMILES CACTVS 3.370 "NCCCCC[CH](C[SeH])C(O)=O" DDK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C(CC[C@@H](C[SeH])C(=O)O)CCN" DDK SMILES "OpenEye OEToolkits" 1.7.6 "C(CCC(C[SeH])C(=O)O)CCN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DDK "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-7-amino-2-(selanylmethyl)heptanoic acid" DDK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-7-azanyl-2-(selanylmethyl)heptanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DDK "Create component" 2013-06-13 PDBJ DDK "Initial release" 2013-10-02 RCSB #