data_DFU # _chem_comp.id DFU _chem_comp.name "(2S,3R,4S,5R)-2-METHYLPIPERIDINE-3,4,5-TRIOL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H13 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms DEOXYFUCONOJIRIMYCIN _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-02-06 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 147.172 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DFU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DFU C1 C1 C 0 1 N N N 74.471 55.522 68.795 -0.187 0.554 0.929 C1 DFU 1 DFU C2 C2 C 0 1 N N R 73.751 54.213 69.112 -1.690 0.723 1.157 C2 DFU 2 DFU C3 C3 C 0 1 N N S 72.359 54.486 69.698 -2.341 -0.624 1.475 C3 DFU 3 DFU C4 C4 C 0 1 N N R 71.532 55.365 68.757 -1.608 -1.328 2.622 C4 DFU 4 DFU C5 C5 C 0 1 N N S 72.278 56.677 68.448 -0.104 -1.436 2.314 C5 DFU 5 DFU C6 C6 C 0 1 N N N 71.502 57.547 67.457 0.667 -2.084 3.465 C6 DFU 6 DFU O4 O4 O 0 1 N N N 71.312 54.665 67.511 -1.792 -0.600 3.838 O4 DFU 7 DFU O3 O3 O 0 1 N N N 71.688 53.242 69.928 -3.705 -0.436 1.839 O3 DFU 8 DFU O2 O2 O 0 1 N N N 74.566 53.395 69.978 -2.286 1.243 -0.030 O2 DFU 9 DFU N5 N5 N 0 1 N N N 73.603 56.351 67.961 0.480 -0.109 2.050 N5 DFU 10 DFU H11 1H1 H 0 1 N N N 74.702 56.053 69.730 -0.002 0.003 -0.003 H11 DFU 11 DFU H12 2H1 H 0 1 N N N 75.409 55.311 68.261 0.264 1.543 0.778 H12 DFU 12 DFU H2 H2 H 0 1 N N N 73.596 53.649 68.180 -1.886 1.446 1.957 H2 DFU 13 DFU H3 H3 H 0 1 N N N 72.475 55.024 70.650 -2.337 -1.260 0.581 H3 DFU 14 DFU H4 H4 H 0 1 N N N 70.574 55.592 69.248 -2.041 -2.321 2.786 H4 DFU 15 DFU H5 H5 H 0 1 N N N 72.368 57.274 69.368 0.036 -2.068 1.428 H5 DFU 16 DFU H61 1H6 H 0 1 N N N 71.316 58.535 67.903 1.405 -1.387 3.874 H61 DFU 17 DFU H62 2H6 H 0 1 N N N 72.090 57.666 66.535 -0.015 -2.375 4.269 H62 DFU 18 DFU H63 3H6 H 0 1 N N N 70.542 57.065 67.220 1.194 -2.979 3.119 H63 DFU 19 DFU HO4 HO4 H 0 1 N N N 71.264 55.292 66.799 -1.709 0.338 3.609 HO4 DFU 20 DFU HO3 HO3 H 0 1 N N N 71.539 52.804 69.098 -4.130 0.018 1.094 HO3 DFU 21 DFU HO2 HO2 H 0 1 N N N 74.745 52.564 69.553 -1.716 0.970 -0.766 HO2 DFU 22 DFU HN5 HN5 H 0 1 N N N 74.080 57.220 67.830 1.473 -0.210 1.841 HN5 DFU 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DFU C1 C2 SING N N 1 DFU C1 N5 SING N N 2 DFU C1 H11 SING N N 3 DFU C1 H12 SING N N 4 DFU C2 C3 SING N N 5 DFU C2 O2 SING N N 6 DFU C2 H2 SING N N 7 DFU C3 C4 SING N N 8 DFU C3 O3 SING N N 9 DFU C3 H3 SING N N 10 DFU C4 C5 SING N N 11 DFU C4 O4 SING N N 12 DFU C4 H4 SING N N 13 DFU C5 C6 SING N N 14 DFU C5 N5 SING N N 15 DFU C5 H5 SING N N 16 DFU C6 H61 SING N N 17 DFU C6 H62 SING N N 18 DFU C6 H63 SING N N 19 DFU O4 HO4 SING N N 20 DFU O3 HO3 SING N N 21 DFU O2 HO2 SING N N 22 DFU N5 HN5 SING N N 23 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DFU SMILES ACDLabs 10.04 "OC1C(NCC(O)C1O)C" DFU SMILES_CANONICAL CACTVS 3.341 "C[C@@H]1NC[C@@H](O)[C@H](O)[C@@H]1O" DFU SMILES CACTVS 3.341 "C[CH]1NC[CH](O)[CH](O)[CH]1O" DFU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]1[C@H]([C@H]([C@@H](CN1)O)O)O" DFU SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(C(C(CN1)O)O)O" DFU InChI InChI 1.03 "InChI=1S/C6H13NO3/c1-3-5(9)6(10)4(8)2-7-3/h3-10H,2H2,1H3/t3-,4+,5+,6-/m0/s1" DFU InChIKey InChI 1.03 VYOCYWDJTQRZLC-KCDKBNATSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DFU "SYSTEMATIC NAME" ACDLabs 10.04 "(2S,3R,4S,5R)-2-methylpiperidine-3,4,5-triol" DFU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,4S,5R)-2-methylpiperidine-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DFU "Create component" 2007-02-06 RCSB DFU "Modify descriptor" 2011-06-04 RCSB DFU "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DFU _pdbx_chem_comp_synonyms.name DEOXYFUCONOJIRIMYCIN _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##