data_DGJ # _chem_comp.id DGJ _chem_comp.name "(2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H13 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms 1-deoxygalactonojirimycin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-07-01 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 163.172 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DGJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3S5Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DGJ C1 C1 C 0 1 N N N 34.520 57.736 32.670 -0.465 -1.736 0.102 C1 DGJ 1 DGJ C2 C2 C 0 1 N N S 33.115 57.507 32.116 -1.550 -0.673 0.291 C2 DGJ 2 DGJ O2 O2 O 0 1 N N N 32.394 56.585 32.936 -2.821 -1.219 -0.068 O2 DGJ 3 DGJ C3 C3 C 0 1 N N R 33.197 57.009 30.672 -1.240 0.531 -0.602 C3 DGJ 4 DGJ O3 O3 O 0 1 N N N 31.881 56.671 30.190 -2.219 1.549 -0.389 O3 DGJ 5 DGJ C4 C4 C 0 1 N N S 33.837 58.088 29.798 0.149 1.072 -0.252 C4 DGJ 6 DGJ O4 O4 O 0 1 N N N 32.966 59.239 29.703 0.157 1.523 1.104 O4 DGJ 7 DGJ C5 C5 C 0 1 N N R 35.208 58.468 30.354 1.184 -0.041 -0.426 C5 DGJ 8 DGJ N5 N5 N 0 1 N N N 35.179 58.684 31.797 0.843 -1.169 0.451 N5 DGJ 9 DGJ C6 C6 C 0 1 N N N 35.735 59.716 29.677 2.571 0.489 -0.057 C6 DGJ 10 DGJ O6 O6 O 0 1 N N N 37.094 59.911 30.078 3.553 -0.513 -0.330 O6 DGJ 11 DGJ H1 H1 H 0 1 N N N 35.078 56.789 32.692 -0.676 -2.589 0.748 H1 DGJ 12 DGJ H1A H1A H 0 1 N N N 34.464 58.137 33.693 -0.454 -2.062 -0.938 H1A DGJ 13 DGJ H2 H2 H 0 1 N N N 32.569 58.462 32.125 -1.571 -0.357 1.334 H2 DGJ 14 DGJ HO2 HO2 H 0 1 N N N 31.524 56.455 32.577 -3.081 -1.988 0.457 HO2 DGJ 15 DGJ H3 H3 H 0 1 N N N 33.820 56.103 30.629 -1.257 0.222 -1.648 H3 DGJ 16 DGJ HO3 HO3 H 0 1 N N N 31.941 56.363 29.293 -3.124 1.273 -0.587 HO3 DGJ 17 DGJ H4 H4 H 0 1 N N N 33.981 57.692 28.782 0.394 1.903 -0.914 H4 DGJ 18 DGJ HO4 HO4 H 0 1 N N N 33.374 59.902 29.158 -0.479 2.229 1.287 HO4 DGJ 19 DGJ H5 H5 H 0 1 N N N 35.876 57.619 30.145 1.188 -0.376 -1.463 H5 DGJ 20 DGJ HN5 HN5 H 0 1 N N N 34.709 59.556 31.935 0.872 -0.895 1.421 HN5 DGJ 21 DGJ H6 H6 H 0 1 N N N 35.682 59.598 28.585 2.788 1.380 -0.647 H6 DGJ 22 DGJ H6A H6A H 0 1 N N N 35.130 60.585 29.975 2.594 0.741 1.003 H6A DGJ 23 DGJ HO6 HO6 H 0 1 N N N 37.439 60.692 29.661 4.458 -0.244 -0.120 HO6 DGJ 24 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DGJ N5 C1 SING N N 1 DGJ C2 C1 SING N N 2 DGJ C1 H1 SING N N 3 DGJ C1 H1A SING N N 4 DGJ C3 C2 SING N N 5 DGJ C2 O2 SING N N 6 DGJ C2 H2 SING N N 7 DGJ O2 HO2 SING N N 8 DGJ C4 C3 SING N N 9 DGJ O3 C3 SING N N 10 DGJ C3 H3 SING N N 11 DGJ O3 HO3 SING N N 12 DGJ O4 C4 SING N N 13 DGJ C4 C5 SING N N 14 DGJ C4 H4 SING N N 15 DGJ O4 HO4 SING N N 16 DGJ C6 C5 SING N N 17 DGJ C5 N5 SING N N 18 DGJ C5 H5 SING N N 19 DGJ N5 HN5 SING N N 20 DGJ C6 O6 SING N N 21 DGJ C6 H6 SING N N 22 DGJ C6 H6A SING N N 23 DGJ O6 HO6 SING N N 24 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DGJ SMILES ACDLabs 12.01 "OC1C(NCC(O)C1O)CO" DGJ InChI InChI 1.03 "InChI=1S/C6H13NO4/c8-2-3-5(10)6(11)4(9)1-7-3/h3-11H,1-2H2/t3-,4+,5+,6-/m1/s1" DGJ InChIKey InChI 1.03 LXBIFEVIBLOUGU-DPYQTVNSSA-N DGJ SMILES_CANONICAL CACTVS 3.370 "OC[C@H]1NC[C@H](O)[C@@H](O)[C@H]1O" DGJ SMILES CACTVS 3.370 "OC[CH]1NC[CH](O)[CH](O)[CH]1O" DGJ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C1[C@@H]([C@H]([C@H]([C@H](N1)CO)O)O)O" DGJ SMILES "OpenEye OEToolkits" 1.7.2 "C1C(C(C(C(N1)CO)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DGJ "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol" DGJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DGJ "Create component" 2011-07-01 RCSB DGJ "Modify synonyms" 2011-07-11 RCSB DGJ "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DGJ _pdbx_chem_comp_synonyms.name 1-deoxygalactonojirimycin _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##