data_DGQ # _chem_comp.id DGQ _chem_comp.name "(S)-2-(3-((S)-1-carboxy-5-(1,2-dicarba-closo-dodecarboranylamido) pentyl)ureido)pentanedioic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H31 B10 N3 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms DCCBL _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-04-08 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 489.532 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DGQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 4OME _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DGQ B1 B1 B 0 1 N N N 27.579 51.004 41.193 ? ? ? B1 DGQ 1 DGQ B2 B2 B 0 1 N N N 26.319 50.563 42.266 ? ? ? B2 DGQ 2 DGQ B3 B3 B 0 1 N N N 24.994 50.037 41.252 ? ? ? B3 DGQ 3 DGQ B4 B4 B 0 1 N N N 25.506 48.651 40.291 ? ? ? B4 DGQ 4 DGQ B5 B5 B 0 1 N N N 25.488 50.250 39.592 ? ? ? B5 DGQ 5 DGQ B6 B6 B 0 1 N N N 25.983 51.416 40.786 ? ? ? B6 DGQ 6 DGQ B7 B7 B 0 1 N N N 27.111 50.886 39.555 ? ? ? B7 DGQ 7 DGQ B8 B8 B 0 1 N N N 26.827 49.179 39.273 ? ? ? B8 DGQ 8 DGQ B9 B9 B 0 1 N N N 27.166 48.310 40.739 ? ? ? B9 DGQ 9 DGQ CA CA C 0 1 N N N 27.677 49.477 41.942 ? ? ? CA DGQ 10 DGQ NA NA N 0 1 N N N 25.358 46.578 42.644 ? ? ? NA DGQ 11 DGQ OA OA O 0 1 N N N 25.463 48.259 44.187 ? ? ? OA DGQ 12 DGQ CB CB C 0 1 N N N 26.065 48.881 41.914 ? ? ? CB DGQ 13 DGQ NB NB N 0 1 N N N 18.725 45.541 43.465 ? ? ? NB DGQ 14 DGQ OB OB O 0 1 N N N 19.664 47.016 45.508 ? ? ? OB DGQ 15 DGQ CC CC C 0 1 N N N 25.619 47.938 43.007 ? ? ? CC DGQ 16 DGQ NC NC N 0 1 N N N 16.706 45.102 42.246 ? ? ? NC DGQ 17 DGQ OC OC O 0 1 N N N 20.829 45.142 46.142 ? ? ? OC DGQ 18 DGQ CD CD C 0 1 N N N 24.032 46.328 42.105 ? ? ? CD DGQ 19 DGQ OD OD O 0 1 N N N 18.539 43.660 42.127 ? ? ? OD DGQ 20 DGQ CE CE C 0 1 N N N 23.146 45.806 43.131 ? ? ? CE DGQ 21 DGQ OE OE O 0 1 N N N 13.838 48.826 40.104 ? ? ? OE DGQ 22 DGQ CF CF C 0 1 N N N 21.987 46.666 43.187 ? ? ? CF DGQ 23 DGQ OF OF O 0 1 N N N 13.116 47.001 39.153 ? ? ? OF DGQ 24 DGQ CG CG C 0 1 N N N 20.854 45.845 42.831 ? ? ? CG DGQ 25 DGQ OG OG O 0 1 N N N 17.047 43.899 38.846 ? ? ? OG DGQ 26 DGQ CH CH C 0 1 N N S 20.072 45.221 43.898 ? ? ? CH DGQ 27 DGQ OH OH O 0 1 N N N 18.025 45.668 39.883 ? ? ? OH DGQ 28 DGQ CI CI C 0 1 N N N 20.224 45.770 45.253 ? ? ? CI DGQ 29 DGQ CJ CJ C 0 1 N N N 18.032 44.694 42.572 ? ? ? CJ DGQ 30 DGQ CK CK C 0 1 N N S 16.143 44.611 40.979 ? ? ? CK DGQ 31 DGQ CL CL C 0 1 N N N 14.859 45.326 40.666 ? ? ? CL DGQ 32 DGQ CM CM C 0 1 N N N 17.149 44.779 39.911 ? ? ? CM DGQ 33 DGQ CN CN C 0 1 N N N 15.076 46.794 40.575 ? ? ? CN DGQ 34 DGQ CO CO C 0 1 N N N 13.939 47.497 39.918 ? ? ? CO DGQ 35 DGQ B10 B10 B 0 1 N N N 28.158 49.682 40.281 ? ? ? B10 DGQ 36 DGQ HNA HNA H 0 1 N N N 26.038 45.853 42.753 ? ? ? HNA DGQ 37 DGQ HNB HNB H 0 1 N N N 18.282 46.371 43.803 ? ? ? HNB DGQ 38 DGQ HNC HNC H 0 1 N N N 16.180 45.697 42.853 ? ? ? HNC DGQ 39 DGQ HD HD H 0 1 N N N 23.618 47.270 41.716 ? ? ? HD DGQ 40 DGQ HDA HDA H 0 1 N N N 24.108 45.596 41.288 ? ? ? HDA DGQ 41 DGQ HE HE H 0 1 N N N 22.840 44.781 42.876 ? ? ? HE DGQ 42 DGQ HEA HEA H 0 1 N N N 23.659 45.804 44.104 ? ? ? HEA DGQ 43 DGQ HF HF H 0 1 N N N 21.861 47.069 44.203 ? ? ? HF DGQ 44 DGQ HFA HFA H 0 1 N N N 22.094 47.496 42.474 ? ? ? HFA DGQ 45 DGQ HG HG H 0 1 N N N 20.165 46.478 42.253 ? ? ? HG DGQ 46 DGQ HGA HGA H 0 1 N N N 21.231 45.034 42.190 ? ? ? HGA DGQ 47 DGQ HH HH H 0 1 N N N 20.230 44.132 43.905 ? ? ? HH DGQ 48 DGQ HK HK H 0 1 N N N 15.922 43.539 41.085 ? ? ? HK DGQ 49 DGQ HL HL H 0 1 N N N 14.468 44.960 39.705 ? ? ? HL DGQ 50 DGQ HLA HLA H 0 1 N N N 14.129 45.119 41.462 ? ? ? HLA DGQ 51 DGQ HN HN H 0 1 N N N 15.200 47.196 41.591 ? ? ? HN DGQ 52 DGQ HND HND H 0 1 N N N 15.990 46.980 39.993 ? ? ? HND DGQ 53 DGQ HOB HOB H 0 1 N N N 19.827 47.258 46.412 ? ? ? HOB DGQ 54 DGQ HOE HOE H 0 1 N N N 13.116 49.164 39.588 ? ? ? HOE DGQ 55 DGQ HOG HOG H 0 1 N N N 17.706 44.111 38.196 ? ? ? HOG DGQ 56 DGQ HCA HCA H 0 1 N N N ? ? ? ? ? ? HCA DGQ 57 DGQ HB1 HB1 H 0 1 N N N ? ? ? ? ? ? HB1 DGQ 58 DGQ HB2 HB2 H 0 1 N N N ? ? ? ? ? ? HB2 DGQ 59 DGQ HB3 HB3 H 0 1 N N N ? ? ? ? ? ? HB3 DGQ 60 DGQ HB4 HB4 H 0 1 N N N ? ? ? ? ? ? HB4 DGQ 61 DGQ HB5 HB5 H 0 1 N N N ? ? ? ? ? ? HB5 DGQ 62 DGQ HB6 HB6 H 0 1 N N N ? ? ? ? ? ? HB6 DGQ 63 DGQ HB7 HB7 H 0 1 N N N ? ? ? ? ? ? HB7 DGQ 64 DGQ HB8 HB8 H 0 1 N N N ? ? ? ? ? ? HB8 DGQ 65 DGQ HB9 HB9 H 0 1 N N N ? ? ? ? ? ? HB9 DGQ 66 DGQ HB0 HB0 H 0 1 N N N ? ? ? ? ? ? HB0 DGQ 67 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DGQ B1 B2 SING N N 1 DGQ B1 B6 SING N N 2 DGQ B1 B7 SING N N 3 DGQ B1 CA SING N N 4 DGQ B1 B10 SING N N 5 DGQ B2 B3 SING N N 6 DGQ B2 B6 SING N N 7 DGQ B2 CA SING N N 8 DGQ B2 CB SING N N 9 DGQ B3 B4 SING N N 10 DGQ B3 B5 SING N N 11 DGQ B3 B6 SING N N 12 DGQ B3 CB SING N N 13 DGQ B4 B5 SING N N 14 DGQ B4 B8 SING N N 15 DGQ B4 B9 SING N N 16 DGQ B4 CB SING N N 17 DGQ B5 B6 SING N N 18 DGQ B5 B7 SING N N 19 DGQ B5 B8 SING N N 20 DGQ B6 B7 SING N N 21 DGQ B7 B8 SING N N 22 DGQ B7 B10 SING N N 23 DGQ B8 B9 SING N N 24 DGQ B8 B10 SING N N 25 DGQ B9 CA SING N N 26 DGQ B9 CB SING N N 27 DGQ B9 B10 SING N N 28 DGQ CA CB SING N N 29 DGQ CA B10 SING N N 30 DGQ NA CC SING N N 31 DGQ NA CD SING N N 32 DGQ OA CC DOUB N N 33 DGQ CB CC SING N N 34 DGQ NB CH SING N N 35 DGQ NB CJ SING N N 36 DGQ OB CI SING N N 37 DGQ NC CJ SING N N 38 DGQ NC CK SING N N 39 DGQ OC CI DOUB N N 40 DGQ CD CE SING N N 41 DGQ OD CJ DOUB N N 42 DGQ CE CF SING N N 43 DGQ OE CO SING N N 44 DGQ CF CG SING N N 45 DGQ OF CO DOUB N N 46 DGQ CG CH SING N N 47 DGQ OG CM SING N N 48 DGQ CH CI SING N N 49 DGQ OH CM DOUB N N 50 DGQ CK CL SING N N 51 DGQ CK CM SING N N 52 DGQ CL CN SING N N 53 DGQ CN CO SING N N 54 DGQ NA HNA SING N N 55 DGQ NB HNB SING N N 56 DGQ NC HNC SING N N 57 DGQ CD HD SING N N 58 DGQ CD HDA SING N N 59 DGQ CE HE SING N N 60 DGQ CE HEA SING N N 61 DGQ CF HF SING N N 62 DGQ CF HFA SING N N 63 DGQ CG HG SING N N 64 DGQ CG HGA SING N N 65 DGQ CH HH SING N N 66 DGQ CK HK SING N N 67 DGQ CL HL SING N N 68 DGQ CL HLA SING N N 69 DGQ CN HN SING N N 70 DGQ CN HND SING N N 71 DGQ OB HOB SING N N 72 DGQ OE HOE SING N N 73 DGQ OG HOG SING N N 74 DGQ CA HCA SING N N 75 DGQ B1 HB1 SING N N 76 DGQ B2 HB2 SING N N 77 DGQ B3 HB3 SING N N 78 DGQ B4 HB4 SING N N 79 DGQ B5 HB5 SING N N 80 DGQ B6 HB6 SING N N 81 DGQ B7 HB7 SING N N 82 DGQ B8 HB8 SING N N 83 DGQ B9 HB9 SING N N 84 DGQ B10 HB0 SING N N 85 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DGQ InChI InChI 1.03 "InChI=1S/C15H31B10N3O8/c29-9(30)5-4-8(11(33)34)28-13(36)27-7(10(31)32)3-1-2-6-26-12(35)15-14-16(15)18(14)19(14)17(14,15)21(15)20(15,16)22(16,18)24(18,19)23(17,19,21)25(20,21,22)24/h7-8,14,16-25H,1-6H2,(H,26,35)(H,29,30)(H,31,32)(H,33,34)(H2,27,28,36)/t7-,8-/m0/s1" DGQ InChIKey InChI 1.03 NYWNLUFFIRQESZ-YUMQZZPRSA-N DGQ SMILES_CANONICAL CACTVS 3.385 "OC(=O)CC[C@H](NC(=O)N[C@@H](CCCCNC(=O)[C]1234[BH]567[BH]89%10[BH]%11%12%13[BH]58%14[BH]%11%15%16[BH]%12%17%18[BH]9%13%19[BH]16%10[BH]2%17%19[CH]3%15%18[BH]47%14%16)C(O)=O)C(O)=O" DGQ SMILES CACTVS 3.385 "OC(=O)CC[CH](NC(=O)N[CH](CCCCNC(=O)[C]1234[BH]567[BH]89%10[BH]%11%12%13[BH]58%14[BH]%11%15%16[BH]%12%17%18[BH]9%13%19[BH]16%10[BH]2%17%19[CH]3%15%18[BH]47%14%16)C(O)=O)C(O)=O" DGQ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[BH]1234[BH]567[BH]189[BH]212[BH]33%10[BH]454[BH]656[BH]787[BH]911[CH]232[BH]4%105C7612C(=O)NCCCC[C@@H](C(=O)O)NC(=O)N[C@@H](CCC(=O)O)C(=O)O" DGQ SMILES "OpenEye OEToolkits" 1.7.6 "[BH]1234[BH]567[BH]189[BH]212[BH]33%10[BH]454[BH]656[BH]787[BH]911[CH]232[BH]4%105C7612C(=O)NCCCCC(C(=O)O)NC(=O)NC(CCC(=O)O)C(=O)O" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DGQ "Create component" 2014-04-08 RCSB DGQ "Modify name" 2014-04-15 RCSB DGQ "Initial release" 2015-02-18 RCSB DGQ "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DGQ _pdbx_chem_comp_synonyms.name DCCBL _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##