data_DGU # _chem_comp.id DGU _chem_comp.name "D-galacturonic acid" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H10 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms D-Galacturonate _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-03-23 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 194.139 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DGU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3QPE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DGU O1 OAA O 0 1 N N N 27.926 -25.812 -23.640 -4.260 0.007 -0.252 OAA DGU 1 DGU O2 OAB O 0 1 N N N 28.799 -23.163 -23.217 -2.157 1.531 -0.055 OAB DGU 2 DGU O5 OAC O 0 1 N N N 29.014 -23.823 -18.178 1.611 -1.797 0.197 OAC DGU 3 DGU O6B OAD O 0 1 N N N 27.217 -24.635 -16.203 3.018 1.401 -0.865 OAD DGU 4 DGU C1 CAE C 0 1 N N N 27.838 -25.271 -22.531 -3.368 -0.489 0.394 CAE DGU 5 DGU C2 CAF C 0 1 N N R 27.803 -23.736 -22.356 -2.080 0.264 0.603 CAF DGU 6 DGU C3 CAG C 0 1 N N S 28.059 -23.288 -20.902 -0.917 -0.542 0.021 CAG DGU 7 DGU C4 CAH C 0 1 N N R 27.233 -24.060 -19.844 0.371 0.276 0.121 CAH DGU 8 DGU C5 CAI C 0 1 N N S 27.597 -23.719 -18.390 1.534 -0.530 -0.460 CAI DGU 9 DGU C6 CAJ C 0 1 N N N 26.772 -24.537 -17.371 2.822 0.223 -0.251 CAJ DGU 10 DGU O3 OAK O 0 1 N N N 27.766 -21.890 -20.777 -1.185 -0.844 -1.350 OAK DGU 11 DGU O4 OAL O 0 1 N N N 27.449 -25.461 -20.010 0.639 0.578 1.492 OAL DGU 12 DGU O6A OAM O 0 1 N N N 25.707 -25.035 -17.797 3.679 -0.233 0.468 OAM DGU 13 DGU HO2 HOAB H 0 0 N N N 29.057 -23.801 -23.872 -2.301 1.470 -1.009 HOAB DGU 14 DGU HO5 HOAC H 0 0 N N N 29.216 -23.608 -17.275 1.755 -1.737 1.151 HOAC DGU 15 DGU HO6B HOAD H 0 0 N N N 26.618 -25.152 -15.678 3.860 1.847 -0.700 HOAD DGU 16 DGU H1 HAE H 0 1 N N N 27.784 -25.895 -21.651 -3.494 -1.473 0.821 HAE DGU 17 DGU H2 HAF H 0 1 N N N 26.793 -23.388 -22.619 -1.918 0.418 1.669 HAF DGU 18 DGU H3 HAG H 0 1 N N N 29.118 -23.506 -20.700 -0.803 -1.470 0.581 HAG DGU 19 DGU H4 HAH H 0 1 N N N 26.187 -23.763 -20.010 0.257 1.204 -0.439 HAH DGU 20 DGU H5 HAI H 0 1 N N N 27.322 -22.669 -18.213 1.372 -0.684 -1.527 HAI DGU 21 DGU HO3 HOAK H 0 0 N N N 27.923 -21.612 -19.882 -1.299 -0.063 -1.909 HOAK DGU 22 DGU HO4 HOAL H 0 0 N N N 26.964 -25.937 -19.346 0.753 -0.203 2.051 HOAL DGU 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DGU O1 C1 DOUB N N 1 DGU O2 C2 SING N N 2 DGU O2 HO2 SING N N 3 DGU C5 O5 SING N N 4 DGU O5 HO5 SING N N 5 DGU C6 O6B SING N N 6 DGU O6B HO6B SING N N 7 DGU C1 C2 SING N N 8 DGU C1 H1 SING N N 9 DGU C2 C3 SING N N 10 DGU C2 H2 SING N N 11 DGU C3 O3 SING N N 12 DGU C3 C4 SING N N 13 DGU C3 H3 SING N N 14 DGU O4 C4 SING N N 15 DGU C4 C5 SING N N 16 DGU C4 H4 SING N N 17 DGU C5 C6 SING N N 18 DGU C5 H5 SING N N 19 DGU O6A C6 DOUB N N 20 DGU O3 HO3 SING N N 21 DGU O4 HO4 SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DGU SMILES ACDLabs 12.01 "O=C(O)C(O)C(O)C(O)C(O)C=O" DGU SMILES_CANONICAL CACTVS 3.370 "O[C@@H](C=O)[C@@H](O)[C@@H](O)[C@H](O)C(O)=O" DGU SMILES CACTVS 3.370 "O[CH](C=O)[CH](O)[CH](O)[CH](O)C(O)=O" DGU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C(=O)[C@@H]([C@H]([C@H]([C@@H](C(=O)O)O)O)O)O" DGU SMILES "OpenEye OEToolkits" 1.7.0 "C(=O)C(C(C(C(C(=O)O)O)O)O)O" DGU InChI InChI 1.03 "InChI=1S/C6H10O7/c7-1-2(8)3(9)4(10)5(11)6(12)13/h1-5,8-11H,(H,12,13)/t2-,3+,4+,5-/m0/s1" DGU InChIKey InChI 1.03 IAJILQKETJEXLJ-RSJOWCBRSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DGU "SYSTEMATIC NAME" ACDLabs 12.01 "D-galacturonic acid" DGU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S,3R,4S,5R)-2,3,4,5-tetrahydroxy-6-oxo-hexanoic acid" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support DGU "CARBOHYDRATE ISOMER" D PDB ? DGU "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DGU "Create component" 2011-03-23 RCSB DGU "Modify descriptor" 2011-06-04 RCSB DGU "Modify atom id" 2020-06-24 RCSB DGU "Other modification" 2020-07-17 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DGU _pdbx_chem_comp_synonyms.name D-Galacturonate _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##