data_DK4 # _chem_comp.id DK4 _chem_comp.name "1-(3-deoxy-3-fluoro-beta-D-glucopyranosyl)-5-fluoropyrimidine-2,4(1H,3H)-dione" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C10 H12 F2 N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;1-(3-deoxy-3-fluoro-beta-D-glucosyl)-5-fluoropyrimidine-2,4(1H,3H)-dione; 1-(3-deoxy-3-fluoro-D-glucosyl)-5-fluoropyrimidine-2,4(1H,3H)-dione; 1-(3-deoxy-3-fluoro-glucosyl)-5-fluoropyrimidine-2,4(1H,3H)-dione ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-01-13 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 294.209 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DK4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3L7C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 DK4 "1-(3-deoxy-3-fluoro-beta-D-glucosyl)-5-fluoropyrimidine-2,4(1H,3H)-dione" PDB ? 2 DK4 "1-(3-deoxy-3-fluoro-D-glucosyl)-5-fluoropyrimidine-2,4(1H,3H)-dione" PDB ? 3 DK4 "1-(3-deoxy-3-fluoro-glucosyl)-5-fluoropyrimidine-2,4(1H,3H)-dione" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DK4 C1 C1 C 0 1 N N R 33.343 22.903 27.789 -0.350 0.149 0.558 C1 DK4 1 DK4 N1 N1 N 0 1 N N N 34.178 23.597 28.793 1.094 0.032 0.343 N1 DK4 2 DK4 C2 C2 C 0 1 N N S 33.782 23.105 26.324 -0.883 1.366 -0.203 C2 DK4 3 DK4 N2 N2 N 0 1 N N N 34.350 24.930 30.810 3.269 0.077 1.212 N2 DK4 4 DK4 O2 O2 O 0 1 N N N 33.849 24.503 26.012 -0.276 2.554 0.309 O2 DK4 5 DK4 C3 C3 C 0 1 N N S 32.816 22.378 25.364 -2.402 1.447 -0.022 C3 DK4 6 DK4 F3 F3 F 0 1 N N N 33.324 22.363 24.078 -2.906 2.514 -0.774 F3 DK4 7 DK4 C4 C4 C 0 1 N N R 32.489 20.950 25.858 -3.033 0.137 -0.504 C4 DK4 8 DK4 O4 O4 O 0 1 N N N 31.291 20.492 25.239 -4.442 0.172 -0.273 O4 DK4 9 DK4 C5 C5 C 0 1 N N R 32.312 20.865 27.399 -2.417 -1.032 0.269 C5 DK4 10 DK4 O5 O5 O 0 1 N N N 33.404 21.503 28.084 -1.000 -1.031 0.083 O5 DK4 11 DK4 C6 C6 C 0 1 N N N 32.265 19.423 27.875 -2.998 -2.349 -0.249 C6 DK4 12 DK4 O6 O6 O 0 1 N N N 33.355 18.721 27.268 -2.513 -3.431 0.549 O6 DK4 13 DK4 C7 C7 C 0 1 N N N 35.582 23.570 28.699 1.575 -0.225 -0.915 C7 DK4 14 DK4 C8 C8 C 0 1 N N N 36.357 24.223 29.655 2.907 -0.333 -1.113 C8 DK4 15 DK4 F8 F8 F 0 1 N N N 37.693 24.189 29.540 3.398 -0.586 -2.345 F8 DK4 16 DK4 C9 C9 C 0 1 N N N 35.744 24.909 30.711 3.782 -0.175 -0.009 C9 DK4 17 DK4 O9 O9 O 0 1 N N N 36.407 25.497 31.567 4.987 -0.267 -0.162 O9 DK4 18 DK4 C10 C10 C 0 1 N N N 33.558 24.273 29.858 1.938 0.184 1.380 C10 DK4 19 DK4 O10 O10 O 0 1 N N N 32.333 24.306 29.958 1.490 0.417 2.487 O10 DK4 20 DK4 H1 H1 H 0 1 N N N 32.332 23.331 27.862 -0.550 0.271 1.623 H1 DK4 21 DK4 H2 H2 H 0 1 N N N 34.785 22.672 26.196 -0.647 1.264 -1.263 H2 DK4 22 DK4 HN2 HN2 H 0 1 N N N 33.914 25.418 31.566 3.862 0.186 1.972 HN2 DK4 23 DK4 HO2 HO2 H 0 1 N Y N 34.120 24.614 25.108 -0.568 3.365 -0.129 HO2 DK4 24 DK4 H3 H3 H 0 1 N N N 31.870 22.939 25.350 -2.636 1.598 1.031 H3 DK4 25 DK4 H4 H4 H 0 1 N N N 33.347 20.319 25.584 -2.840 0.010 -1.570 H4 DK4 26 DK4 HO4 HO4 H 0 1 N Y N 31.092 19.615 25.544 -4.898 0.893 -0.730 HO4 DK4 27 DK4 H5 H5 H 0 1 N N N 31.363 21.373 27.627 -2.644 -0.926 1.330 H5 DK4 28 DK4 H61 H6 H 0 1 N N N 32.358 19.386 28.970 -4.086 -2.314 -0.190 H61 DK4 29 DK4 H62 H6A H 0 1 N N N 31.311 18.961 27.581 -2.695 -2.498 -1.285 H62 DK4 30 DK4 HO6 HO6 H 0 1 N Y N 33.346 17.814 27.552 -2.841 -4.299 0.277 HO6 DK4 31 DK4 H7 H7 H 0 1 N N N 36.059 23.043 27.886 0.892 -0.342 -1.743 H7 DK4 32 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DK4 C2 C1 SING N N 1 DK4 C1 O5 SING N N 2 DK4 C1 N1 SING N N 3 DK4 C1 H1 SING N N 4 DK4 C7 N1 SING N N 5 DK4 N1 C10 SING N N 6 DK4 C3 C2 SING N N 7 DK4 O2 C2 SING N N 8 DK4 C2 H2 SING N N 9 DK4 C10 N2 SING N N 10 DK4 C9 N2 SING N N 11 DK4 N2 HN2 SING N N 12 DK4 O2 HO2 SING N N 13 DK4 F3 C3 SING N N 14 DK4 C3 C4 SING N N 15 DK4 C3 H3 SING N N 16 DK4 O4 C4 SING N N 17 DK4 C4 C5 SING N N 18 DK4 C4 H4 SING N N 19 DK4 O4 HO4 SING N N 20 DK4 C5 C6 SING N N 21 DK4 C5 O5 SING N N 22 DK4 C5 H5 SING N N 23 DK4 O6 C6 SING N N 24 DK4 C6 H61 SING N N 25 DK4 C6 H62 SING N N 26 DK4 O6 HO6 SING N N 27 DK4 C7 C8 DOUB N N 28 DK4 C7 H7 SING N N 29 DK4 F8 C8 SING N N 30 DK4 C8 C9 SING N N 31 DK4 C9 O9 DOUB N N 32 DK4 C10 O10 DOUB N N 33 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DK4 SMILES_CANONICAL CACTVS 3.352 "OC[C@H]1O[C@H]([C@H](O)[C@@H](F)[C@@H]1O)N2C=C(F)C(=O)NC2=O" DK4 SMILES CACTVS 3.352 "OC[CH]1O[CH]([CH](O)[CH](F)[CH]1O)N2C=C(F)C(=O)NC2=O" DK4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1=C(C(=O)NC(=O)N1[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)F)O)F" DK4 SMILES "OpenEye OEToolkits" 1.7.0 "C1=C(C(=O)NC(=O)N1C2C(C(C(C(O2)CO)O)F)O)F" DK4 InChI InChI 1.03 "InChI=1S/C10H12F2N2O6/c11-3-1-14(10(19)13-8(3)18)9-7(17)5(12)6(16)4(2-15)20-9/h1,4-7,9,15-17H,2H2,(H,13,18,19)/t4-,5+,6-,7-,9-/m1/s1" DK4 InChIKey InChI 1.03 BXHWKGLMPCAUQA-XLKNOJSPSA-N # _pdbx_chem_comp_identifier.comp_id DK4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.6.1 _pdbx_chem_comp_identifier.identifier "5-fluoro-1-[(2R,3S,4S,5R,6R)-4-fluoro-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support DK4 "CARBOHYDRATE ISOMER" D PDB ? DK4 "CARBOHYDRATE RING" pyranose PDB ? DK4 "CARBOHYDRATE ANOMER" beta PDB ? DK4 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DK4 "Create component" 2010-01-13 RCSB DK4 "Modify descriptor" 2011-06-04 RCSB DK4 "Other modification" 2020-07-03 RCSB DK4 "Modify synonyms" 2020-07-17 RCSB DK4 "Modify internal type" 2020-07-17 RCSB DK4 "Modify linking type" 2020-07-17 RCSB DK4 "Modify atom id" 2020-07-17 RCSB DK4 "Modify component atom id" 2020-07-17 RCSB DK4 "Modify leaving atom flag" 2020-07-17 RCSB ##