data_DM6 # _chem_comp.id DM6 _chem_comp.name "4'-EPIDOXORUBICIN" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAD _chem_comp.formula "C27 H30 N O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4'-EPIADRIAMYCIN" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 544.527 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DM6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1D54 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DM6 C1 C1 C 0 1 Y N N -12.455 18.476 5.182 6.084 -0.803 -0.683 C1 DM6 1 DM6 C2 C2 C 0 1 Y N N -11.236 19.166 5.198 7.044 0.037 -0.142 C2 DM6 2 DM6 C3 C3 C 0 1 Y N N -10.062 18.558 5.108 6.680 1.219 0.469 C3 DM6 3 DM6 C4 C4 C 0 1 Y N N -9.992 17.168 4.949 5.340 1.586 0.550 C4 DM6 4 DM6 C5 C5 C 0 1 N N N -11.208 14.923 4.817 2.933 1.117 0.084 C5 DM6 5 DM6 C6 C6 C 0 1 Y N N -12.508 12.875 4.732 0.576 0.305 0.120 C6 DM6 6 DM6 C7 C7 C 0 1 N N S -13.668 10.642 4.811 -1.812 -0.375 0.235 C7 DM6 7 DM6 C8 C8 C 0 1 N N N -14.993 10.012 4.483 -2.780 -1.299 -0.500 C8 DM6 8 DM6 C9 C9 C 0 1 N N S -16.170 10.603 5.304 -2.305 -2.744 -0.314 C9 DM6 9 DM6 C10 C10 C 0 1 N N N -16.299 12.096 4.928 -1.013 -2.930 -1.108 C10 DM6 10 DM6 C11 C11 C 0 1 Y N N -14.932 14.240 4.907 1.319 -2.073 -1.110 C11 DM6 11 DM6 C12 C12 C 0 1 N N N -13.713 16.395 5.050 3.703 -1.342 -1.185 C12 DM6 12 DM6 C13 C13 C 0 1 N N N -17.501 9.899 4.907 -2.046 -3.011 1.147 C13 DM6 13 DM6 C14 C14 C 0 1 N N N -18.185 9.336 6.161 -3.178 -3.431 2.048 C14 DM6 14 DM6 C15 C15 C 0 1 Y N N -12.402 17.089 5.034 4.740 -0.456 -0.613 C15 DM6 15 DM6 C16 C16 C 0 1 Y N N -11.214 16.414 4.922 4.360 0.747 0.014 C16 DM6 16 DM6 C17 C17 C 0 1 Y N N -12.505 14.257 4.848 1.911 0.095 -0.211 C17 DM6 17 DM6 C18 C18 C 0 1 Y N N -13.705 14.935 4.949 2.289 -1.113 -0.834 C18 DM6 18 DM6 C19 C19 C 0 1 Y N N -14.940 12.811 4.822 -0.022 -1.846 -0.771 C19 DM6 19 DM6 C20 C20 C 0 1 Y N N -13.758 12.141 4.764 -0.388 -0.673 -0.161 C20 DM6 20 DM6 C21 C21 C 0 1 N N N -7.591 17.145 5.214 6.195 3.368 1.595 C21 DM6 21 DM6 O4 O4 O 0 1 N N N -8.857 16.470 4.901 4.986 2.749 1.152 O4 DM6 22 DM6 O5 O5 O 0 1 N N N -10.157 14.262 4.705 2.604 2.248 0.385 O5 DM6 23 DM6 O6 O6 O 0 1 N N N -11.387 12.127 4.727 0.204 1.464 0.719 O6 DM6 24 DM6 O7 O7 O 0 1 N N N -13.189 10.250 6.124 -2.116 0.982 -0.090 O7 DM6 25 DM6 O9 O9 O 0 1 N N N -16.055 10.533 6.727 -3.302 -3.646 -0.798 O9 DM6 26 DM6 O11 O11 O 0 1 N N N -16.128 14.873 4.880 1.674 -3.235 -1.712 O11 DM6 27 DM6 O12 O12 O 0 1 N N N -14.769 17.036 5.023 4.012 -2.248 -1.934 O12 DM6 28 DM6 O13 O13 O 0 1 N N N -17.924 10.311 3.822 -0.931 -2.887 1.595 O13 DM6 29 DM6 O14 O14 O 0 1 N N N -19.009 8.272 5.685 -2.684 -3.621 3.376 O14 DM6 30 DM6 "C1'" C1* C 0 1 N N R -12.292 9.154 6.071 -2.933 1.488 0.968 "C1'" DM6 31 DM6 "C2'" C2* C 0 1 N N N -11.513 9.224 7.341 -2.992 3.015 0.879 "C2'" DM6 32 DM6 "C3'" C3* C 0 1 N N S -12.410 8.930 8.564 -3.566 3.414 -0.485 "C3'" DM6 33 DM6 "C4'" C4* C 0 1 N N R -13.158 7.641 8.363 -4.906 2.696 -0.682 "C4'" DM6 34 DM6 "C5'" C5* C 0 1 N N S -13.912 7.661 7.061 -4.702 1.193 -0.476 "C5'" DM6 35 DM6 "C6'" C6* C 0 1 N N N -14.663 6.349 6.738 -6.027 0.464 -0.702 "C6'" DM6 36 DM6 "O4'" O4* O 0 1 N N N -13.929 7.310 9.490 -5.387 2.937 -2.006 "O4'" DM6 37 DM6 "O5'" O5* O 0 1 N N N -13.010 7.907 5.960 -4.247 0.947 0.853 "O5'" DM6 38 DM6 "N3'" N3* N 1 1 N N N -11.502 8.790 9.734 -3.771 4.868 -0.527 "N3'" DM6 39 DM6 H1 H1 H 0 1 N N N -13.418 19.003 5.282 6.379 -1.726 -1.160 H1 DM6 40 DM6 H2 H2 H 0 1 N N N -11.197 20.264 5.287 8.088 -0.237 -0.198 H2 DM6 41 DM6 H3 H3 H 0 1 N N N -9.163 19.194 5.164 7.439 1.864 0.886 H3 DM6 42 DM6 H7 H7 H 0 1 N N N -12.948 10.278 4.040 -1.924 -0.521 1.310 H7 DM6 43 DM6 H81 1H8 H 0 1 N N N -15.201 10.073 3.389 -2.791 -1.049 -1.561 H81 DM6 44 DM6 H82 2H8 H 0 1 N N N -14.945 8.904 4.598 -3.782 -1.185 -0.086 H82 DM6 45 DM6 H101 1H10 H 0 0 N N N -16.887 12.220 3.989 -1.238 -2.892 -2.173 H101 DM6 46 DM6 H102 2H10 H 0 0 N N N -16.973 12.628 5.638 -0.580 -3.901 -0.867 H102 DM6 47 DM6 H141 1H14 H 0 0 N N N -17.475 9.032 6.965 -3.945 -2.656 2.054 H141 DM6 48 DM6 H142 2H14 H 0 0 N N N -18.734 10.100 6.757 -3.607 -4.364 1.683 H142 DM6 49 DM6 H211 1H21 H 0 0 N N N -6.641 16.561 5.173 5.960 4.312 2.088 H211 DM6 50 DM6 H212 2H21 H 0 0 N N N -7.489 18.040 4.556 6.705 2.709 2.297 H212 DM6 51 DM6 H213 3H21 H 0 0 N N N -7.677 17.621 6.218 6.842 3.557 0.738 H213 DM6 52 DM6 HO6 HO6 H 0 1 N N N -11.389 11.180 4.647 0.198 1.296 1.672 HO6 DM6 53 DM6 HO9 HO9 H 0 1 N N N -16.775 10.894 7.229 -2.952 -4.540 -0.678 HO9 DM6 54 DM6 HO11 HO11 H 0 0 N N N -16.954 14.405 4.851 1.892 -3.860 -1.006 HO11 DM6 55 DM6 HO14 HO14 H 0 0 N N N -19.432 7.923 6.460 -3.438 -3.889 3.919 HO14 DM6 56 DM6 "H1'" H1* H 0 1 N N N -11.624 9.202 5.179 -2.504 1.197 1.927 "H1'" DM6 57 DM6 "H2'1" 1H2* H 0 0 N N N -10.623 8.551 7.313 -3.633 3.401 1.672 "H2'1" DM6 58 DM6 "H2'2" 2H2* H 0 0 N N N -10.985 10.200 7.445 -1.988 3.425 0.987 "H2'2" DM6 59 DM6 "H3'" H3* H 0 1 N N N -13.154 9.746 8.712 -2.874 3.119 -1.273 "H3'" DM6 60 DM6 "H4'" H4* H 0 1 N N N -12.428 6.802 8.269 -5.630 3.068 0.043 "H4'" DM6 61 DM6 "H5'" H5* H 0 1 N N N -14.664 8.474 7.185 -3.961 0.827 -1.186 "H5'" DM6 62 DM6 "H6'1" 1H6* H 0 0 N N N -15.221 6.363 5.773 -6.374 0.647 -1.719 "H6'1" DM6 63 DM6 "H6'2" 2H6* H 0 0 N N N -13.962 5.482 6.768 -5.883 -0.607 -0.555 "H6'2" DM6 64 DM6 "H6'3" 3H6* H 0 0 N N N -15.343 6.073 7.577 -6.770 0.831 0.006 "H6'3" DM6 65 DM6 "HO'4" 4HO* H 0 0 N N N -14.401 6.495 9.363 -6.229 2.468 -2.087 "HO'4" DM6 66 DM6 "HN'1" 1HN* H 0 0 N N N -12.094 8.595 10.541 -2.889 5.336 -0.384 "HN'1" DM6 67 DM6 "HN'2" 2HN* H 0 0 N N N -10.769 8.093 9.594 -4.149 5.128 -1.425 "HN'2" DM6 68 DM6 "HN'3" 3HN* H 0 0 N N N -10.889 9.594 9.867 -4.417 5.137 0.200 "HN'3" DM6 69 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DM6 C1 C2 DOUB Y N 1 DM6 C1 C15 SING Y N 2 DM6 C1 H1 SING N N 3 DM6 C2 C3 SING Y N 4 DM6 C2 H2 SING N N 5 DM6 C3 C4 DOUB Y N 6 DM6 C3 H3 SING N N 7 DM6 C4 C16 SING Y N 8 DM6 C4 O4 SING N N 9 DM6 C5 C16 SING N N 10 DM6 C5 C17 SING N N 11 DM6 C5 O5 DOUB N N 12 DM6 C6 C17 DOUB Y N 13 DM6 C6 C20 SING Y N 14 DM6 C6 O6 SING N N 15 DM6 C7 C8 SING N N 16 DM6 C7 C20 SING N N 17 DM6 C7 O7 SING N N 18 DM6 C7 H7 SING N N 19 DM6 C8 C9 SING N N 20 DM6 C8 H81 SING N N 21 DM6 C8 H82 SING N N 22 DM6 C9 C10 SING N N 23 DM6 C9 C13 SING N N 24 DM6 C9 O9 SING N N 25 DM6 C10 C19 SING N N 26 DM6 C10 H101 SING N N 27 DM6 C10 H102 SING N N 28 DM6 C11 C18 DOUB Y N 29 DM6 C11 C19 SING Y N 30 DM6 C11 O11 SING N N 31 DM6 C12 C15 SING N N 32 DM6 C12 C18 SING N N 33 DM6 C12 O12 DOUB N N 34 DM6 C13 C14 SING N N 35 DM6 C13 O13 DOUB N N 36 DM6 C14 O14 SING N N 37 DM6 C14 H141 SING N N 38 DM6 C14 H142 SING N N 39 DM6 C15 C16 DOUB Y N 40 DM6 C17 C18 SING Y N 41 DM6 C19 C20 DOUB Y N 42 DM6 C21 O4 SING N N 43 DM6 C21 H211 SING N N 44 DM6 C21 H212 SING N N 45 DM6 C21 H213 SING N N 46 DM6 O6 HO6 SING N N 47 DM6 O7 "C1'" SING N N 48 DM6 O9 HO9 SING N N 49 DM6 O11 HO11 SING N N 50 DM6 O14 HO14 SING N N 51 DM6 "C1'" "C2'" SING N N 52 DM6 "C1'" "O5'" SING N N 53 DM6 "C1'" "H1'" SING N N 54 DM6 "C2'" "C3'" SING N N 55 DM6 "C2'" "H2'1" SING N N 56 DM6 "C2'" "H2'2" SING N N 57 DM6 "C3'" "C4'" SING N N 58 DM6 "C3'" "N3'" SING N N 59 DM6 "C3'" "H3'" SING N N 60 DM6 "C4'" "C5'" SING N N 61 DM6 "C4'" "O4'" SING N N 62 DM6 "C4'" "H4'" SING N N 63 DM6 "C5'" "C6'" SING N N 64 DM6 "C5'" "O5'" SING N N 65 DM6 "C5'" "H5'" SING N N 66 DM6 "C6'" "H6'1" SING N N 67 DM6 "C6'" "H6'2" SING N N 68 DM6 "C6'" "H6'3" SING N N 69 DM6 "O4'" "HO'4" SING N N 70 DM6 "N3'" "HN'1" SING N N 71 DM6 "N3'" "HN'2" SING N N 72 DM6 "N3'" "HN'3" SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DM6 SMILES ACDLabs 10.04 "O=C2c1c(O)c5c(c(O)c1C(=O)c3cccc(OC)c23)CC(O)(C(=O)CO)CC5OC4OC(C(O)C(C4)[NH3+])C" DM6 SMILES_CANONICAL CACTVS 3.341 "COc1cccc2C(=O)c3c(O)c4C[C@](O)(C[C@H](O[C@H]5C[C@H]([NH3+])[C@@H](O)[C@H](C)O5)c4c(O)c3C(=O)c12)C(=O)CO" DM6 SMILES CACTVS 3.341 "COc1cccc2C(=O)c3c(O)c4C[C](O)(C[CH](O[CH]5C[CH]([NH3+])[CH](O)[CH](C)O5)c4c(O)c3C(=O)c12)C(=O)CO" DM6 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]1[C@@H]([C@H](C[C@@H](O1)O[C@H]2C[C@@](Cc3c2c(c4c(c3O)C(=O)c5cccc(c5C4=O)OC)O)(C(=O)CO)O)[NH3+])O" DM6 SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(C(CC(O1)OC2CC(Cc3c2c(c4c(c3O)C(=O)c5cccc(c5C4=O)OC)O)(C(=O)CO)O)[NH3+])O" DM6 InChI InChI 1.03 "InChI=1S/C27H29NO11/c1-10-22(31)13(28)6-17(38-10)39-15-8-27(36,16(30)9-29)7-12-19(15)26(35)21-20(24(12)33)23(32)11-4-3-5-14(37-2)18(11)25(21)34/h3-5,10,13,15,17,22,29,31,33,35-36H,6-9,28H2,1-2H3/p+1/t10-,13-,15-,17-,22-,27-/m0/s1" DM6 InChIKey InChI 1.03 AOJJSUZBOXZQNB-VTZDEGQISA-O # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DM6 "SYSTEMATIC NAME" ACDLabs 10.04 "(1S,3S)-3,5,12-trihydroxy-3-(hydroxyacetyl)-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-ammonio-2,3,6-trideoxy-alpha-L-arabino-hexopyranoside" DM6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3R,4S,6R)-3-hydroxy-2-methyl-6-[[(1S,3S)-3,5,12-trihydroxy-3-(2-hydroxyethanoyl)-10-methoxy-6,11-dioxo-2,4-dihydro-1H-tetracen-1-yl]oxy]oxan-4-yl]azanium" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DM6 "Create component" 1999-07-08 RCSB DM6 "Modify descriptor" 2011-06-04 RCSB DM6 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DM6 _pdbx_chem_comp_synonyms.name "4'-EPIADRIAMYCIN" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##