data_DN # _chem_comp.id DN _chem_comp.name ;UNKNOWN 2'-DEOXYNUCLEOTIDE ; _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C5 H11 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-06-02 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ROB _chem_comp.formula_weight 198.111 _chem_comp.one_letter_code N _chem_comp.three_letter_code DN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DN OP3 O3P O 0 1 N Y N 10.761 86.955 65.197 3.370 -0.796 -0.981 OP3 DN 1 DN P P P 0 1 N N N 10.142 87.086 66.531 2.413 -0.007 0.046 P DN 2 DN OP1 O1P O 0 1 N N N 10.847 88.090 67.347 2.557 -0.588 1.400 OP1 DN 3 DN OP2 O2P O 0 1 N N N 8.692 87.283 66.512 2.831 1.547 0.082 OP2 DN 4 DN "O5'" "O5'" O 0 1 N N N 10.538 85.720 67.176 0.883 -0.141 -0.436 "O5'" DN 5 DN "C5'" "C5'" C 0 1 N N N 9.666 84.781 67.791 -0.219 0.363 0.322 "C5'" DN 6 DN "C4'" "C4'" C 0 1 N N R 10.002 83.443 67.242 -1.525 0.069 -0.419 "C4'" DN 7 DN "O4'" "O4'" O 0 1 N N N 11.364 83.072 67.508 -1.752 -1.344 -0.462 "O4'" DN 8 DN "C3'" "C3'" C 0 1 N N S 9.128 82.397 67.841 -2.710 0.711 0.334 "C3'" DN 9 DN "O3'" "O3'" O 0 1 N N N 8.611 81.562 66.790 -3.110 1.931 -0.292 "O3'" DN 10 DN "C2'" "C2'" C 0 1 N N N 10.023 81.630 68.762 -3.815 -0.372 0.192 "C2'" DN 11 DN "C1'" "C1'" C 0 1 N N N 11.479 81.977 68.419 -2.965 -1.667 0.237 "C1'" DN 12 DN HOP3 HOP3 H 0 0 N Y N 11.498 87.550 65.130 4.309 -0.758 -0.752 HOP3 DN 13 DN HOP2 HOP2 H 0 0 N N N 8.468 88.039 67.041 2.761 1.993 -0.773 HOP2 DN 14 DN "H5'" "H5'1" H 0 1 N N N 9.806 84.790 68.882 -0.239 -0.120 1.299 "H5'" DN 15 DN "H5''" "H5'2" H 0 0 N N N 8.619 85.032 67.567 -0.108 1.439 0.451 "H5''" DN 16 DN "H4'" "H4'" H 0 1 N N N 9.849 83.511 66.155 -1.471 0.466 -1.433 "H4'" DN 17 DN "H3'" "H3'" H 0 1 N N N 8.263 82.806 68.383 -2.459 0.878 1.381 "H3'" DN 18 DN "HO3'" H3T H 0 0 N Y N 8.052 80.891 67.164 -3.852 2.372 0.144 "HO3'" DN 19 DN "H2'" "H2'" H 0 1 N N N 9.856 80.551 68.633 -4.514 -0.331 1.027 "H2'" DN 20 DN "H1'" "H1'" H 0 1 N N N 11.997 81.123 67.957 -3.488 -2.480 -0.268 "H1'" DN 21 DN "H1'2" "H1'2" H 0 0 N N N 12.046 82.261 69.318 -2.746 -1.940 1.269 "H1'2" DN 22 DN "H2'2" HO2 H 0 0 N N N 9.809 81.905 69.806 -4.337 -0.277 -0.760 "H2'2" DN 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DN OP3 P SING N N 1 DN OP3 HOP3 SING N N 2 DN P OP1 DOUB N N 3 DN P OP2 SING N N 4 DN P "O5'" SING N N 5 DN OP2 HOP2 SING N N 6 DN "O5'" "C5'" SING N N 7 DN "C5'" "C4'" SING N N 8 DN "C5'" "H5'" SING N N 9 DN "C5'" "H5''" SING N N 10 DN "C4'" "O4'" SING N N 11 DN "C4'" "C3'" SING N N 12 DN "C4'" "H4'" SING N N 13 DN "O4'" "C1'" SING N N 14 DN "C3'" "O3'" SING N N 15 DN "C3'" "C2'" SING N N 16 DN "C3'" "H3'" SING N N 17 DN "O3'" "HO3'" SING N N 18 DN "C2'" "H2'2" SING N N 19 DN "C2'" "C1'" SING N N 20 DN "C2'" "H2'" SING N N 21 DN "C1'" "H1'" SING N N 22 DN "C1'" "H1'2" SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DN SMILES ACDLabs 12.01 "O=P(OCC1OCCC1O)(O)O" DN SMILES_CANONICAL CACTVS 3.370 "O[C@H]1CCO[C@@H]1CO[P](O)(O)=O" DN SMILES CACTVS 3.370 "O[CH]1CCO[CH]1CO[P](O)(O)=O" DN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1CO[C@@H]([C@H]1O)COP(=O)(O)O" DN SMILES "OpenEye OEToolkits" 1.7.0 "C1COC(C1O)COP(=O)(O)O" DN InChI InChI 1.03 "InChI=1S/C5H11O6P/c6-4-1-2-10-5(4)3-11-12(7,8)9/h4-6H,1-3H2,(H2,7,8,9)/t4-,5+/m0/s1" DN InChIKey InChI 1.03 BVOBPNSQIRMLCA-CRCLSJGQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DN "SYSTEMATIC NAME" ACDLabs 12.01 1,4-anhydro-2-deoxy-5-O-phosphono-D-erythro-pentitol DN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3S)-3-hydroxyoxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DN "Create component" 2010-06-02 RCSB DN "Modify descriptor" 2011-06-04 RCSB #