data_DOC # _chem_comp.id DOC _chem_comp.name "2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H14 N3 O6 P" _chem_comp.mon_nstd_parent_comp_id DC _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 291.198 _chem_comp.one_letter_code C _chem_comp.three_letter_code DOC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DOC N1 N1 N 0 1 N N N 8.490 10.822 13.131 -0.507 -0.477 2.493 N1 DOC 1 DOC C2 C2 C 0 1 N N N 8.700 11.245 11.790 0.222 0.652 2.523 C2 DOC 2 DOC N3 N3 N 0 1 N N N 9.934 11.192 11.276 1.056 0.906 3.530 N3 DOC 3 DOC C4 C4 C 0 1 N N N 10.943 10.754 11.996 1.189 0.047 4.532 C4 DOC 4 DOC C5 C5 C 0 1 N N N 10.774 10.317 13.366 0.442 -1.148 4.529 C5 DOC 5 DOC C6 C6 C 0 1 N N N 9.529 10.374 13.889 -0.405 -1.389 3.501 C6 DOC 6 DOC O2 O2 O 0 1 N N N 7.733 11.660 11.105 0.118 1.458 1.613 O2 DOC 7 DOC N4 N4 N 0 1 N N N 12.132 10.742 11.402 2.054 0.320 5.567 N4 DOC 8 DOC "C1'" C1* C 0 1 N N R 7.127 10.913 13.695 -1.416 -0.728 1.372 "C1'" DOC 9 DOC "C2'" C2* C 0 1 N N N 6.194 9.715 13.665 -2.465 0.396 1.287 "C2'" DOC 10 DOC "C3'" C3* C 0 1 N N N 5.529 9.752 15.042 -2.274 0.987 -0.131 "C3'" DOC 11 DOC "C4'" C4* C 0 1 N N S 6.212 10.869 15.847 -1.556 -0.170 -0.870 "C4'" DOC 12 DOC "O4'" O4* O 0 1 N N N 7.193 11.471 14.986 -0.681 -0.726 0.137 "O4'" DOC 13 DOC "C5'" C5* C 0 1 N N N 6.923 10.400 17.091 -0.749 0.364 -2.054 "C5'" DOC 14 DOC "O5'" O5* O 0 1 N N N 8.063 9.641 16.758 -0.098 -0.721 -2.717 "O5'" DOC 15 DOC P P P 0 1 N N N 8.869 9.063 18.017 0.728 -0.088 -3.945 P DOC 16 DOC OP1 O1P O 0 1 N N N 10.116 8.376 17.617 1.719 0.880 -3.426 OP1 DOC 17 DOC OP2 O2P O 0 1 N N N 7.882 8.443 18.915 1.490 -1.262 -4.741 OP2 DOC 18 DOC OP3 O3P O 0 1 N Y N 9.388 10.381 18.691 -0.286 0.664 -4.943 OP3 DOC 19 DOC H5 H5 H 0 1 N N N 11.589 9.942 14.007 0.538 -1.857 5.338 H5 DOC 20 DOC H6 H6 H 0 1 N N N 9.361 10.055 14.931 -0.991 -2.296 3.477 H6 DOC 21 DOC HN41 1HN4 H 0 0 N N N 12.914 10.402 11.960 2.569 1.141 5.565 HN41 DOC 22 DOC HN42 2HN4 H 0 0 N N N 12.345 11.671 11.041 2.145 -0.308 6.300 HN42 DOC 23 DOC "H1'" H1* H 0 1 N N N 6.615 11.567 12.951 -1.913 -1.689 1.506 "H1'" DOC 24 DOC "H2'" 1H2* H 0 1 N N N 5.482 9.703 12.806 -3.471 -0.009 1.398 "H2'" DOC 25 DOC "H2''" 2H2* H 0 0 N N N 6.689 8.747 13.415 -2.274 1.156 2.045 "H2''" DOC 26 DOC "H3'1" 1H3* H 0 0 N N N 4.421 9.866 14.988 -3.236 1.206 -0.594 "H3'1" DOC 27 DOC "H3'2" 2H3* H 0 0 N N N 5.546 8.765 15.562 -1.646 1.877 -0.100 "H3'2" DOC 28 DOC "H4'" H4* H 0 1 N N N 5.410 11.567 16.183 -2.276 -0.917 -1.204 "H4'" DOC 29 DOC "H5'" 1H5* H 0 1 N N N 7.175 11.249 17.767 -1.418 0.868 -2.752 "H5'" DOC 30 DOC "H5''" 2H5* H 0 0 N N N 6.239 9.841 17.771 -0.001 1.071 -1.694 "H5''" DOC 31 DOC HOP2 2HOP H 0 0 N N N 8.359 8.100 19.661 1.972 -0.841 -5.466 HOP2 DOC 32 DOC HOP3 3HOP H 0 0 N N N 9.865 10.038 19.437 -0.913 -0.000 -5.258 HOP3 DOC 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DOC N1 C2 SING N N 1 DOC N1 C6 SING N N 2 DOC N1 "C1'" SING N N 3 DOC C2 N3 SING N N 4 DOC C2 O2 DOUB N N 5 DOC N3 C4 DOUB N N 6 DOC C4 C5 SING N N 7 DOC C4 N4 SING N N 8 DOC C5 C6 DOUB N N 9 DOC C5 H5 SING N N 10 DOC C6 H6 SING N N 11 DOC N4 HN41 SING N N 12 DOC N4 HN42 SING N N 13 DOC "C1'" "C2'" SING N N 14 DOC "C1'" "O4'" SING N N 15 DOC "C1'" "H1'" SING N N 16 DOC "C2'" "C3'" SING N N 17 DOC "C2'" "H2'" SING N N 18 DOC "C2'" "H2''" SING N N 19 DOC "C3'" "C4'" SING N N 20 DOC "C3'" "H3'1" SING N N 21 DOC "C3'" "H3'2" SING N N 22 DOC "C4'" "O4'" SING N N 23 DOC "C4'" "C5'" SING N N 24 DOC "C4'" "H4'" SING N N 25 DOC "C5'" "O5'" SING N N 26 DOC "C5'" "H5'" SING N N 27 DOC "C5'" "H5''" SING N N 28 DOC "O5'" P SING N N 29 DOC P OP1 DOUB N N 30 DOC P OP2 SING N N 31 DOC P OP3 SING N N 32 DOC OP2 HOP2 SING N N 33 DOC OP3 HOP3 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DOC SMILES ACDLabs 10.04 "O=C1N=C(N)C=CN1C2OC(CC2)COP(=O)(O)O" DOC SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)N(C=C1)[C@H]2CC[C@@H](CO[P](O)(O)=O)O2" DOC SMILES CACTVS 3.341 "NC1=NC(=O)N(C=C1)[CH]2CC[CH](CO[P](O)(O)=O)O2" DOC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1C[C@@H](O[C@@H]1COP(=O)(O)O)N2C=CC(=NC2=O)N" DOC SMILES "OpenEye OEToolkits" 1.5.0 "C1CC(OC1COP(=O)(O)O)N2C=CC(=NC2=O)N" DOC InChI InChI 1.03 "InChI=1S/C9H14N3O6P/c10-7-3-4-12(9(13)11-7)8-2-1-6(18-8)5-17-19(14,15)16/h3-4,6,8H,1-2,5H2,(H2,10,11,13)(H2,14,15,16)/t6-,8+/m0/s1" DOC InChIKey InChI 1.03 RAJMXAZJKUGYGW-POYBYMJQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DOC "SYSTEMATIC NAME" ACDLabs 10.04 "[(2S,5R)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen phosphate" DOC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DOC "Create component" 1999-07-08 RCSB DOC "Modify descriptor" 2011-06-04 RCSB #