data_DRK # _chem_comp.id DRK _chem_comp.name "3-({[(3S)-3,4-dihydroxybutyl]oxy}amino)-1H,2'H-2,3'-biindol-2'-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H19 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Indirubin_E804 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-09-10 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 365.383 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DRK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3EB0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DRK OAA OAA O 0 1 N N N 44.542 9.903 1.674 -2.511 0.437 -2.949 OAA DRK 1 DRK CAS CAS C 0 1 N N N 45.013 9.111 2.480 -2.870 0.847 -1.857 CAS DRK 2 DRK NAP NAP N 0 1 N N N 44.564 8.964 3.717 -3.627 1.905 -1.635 NAP DRK 3 DRK CAW CAW C 0 1 N N N 45.302 8.032 4.323 -3.858 2.111 -0.311 CAW DRK 4 DRK CAH CAH C 0 1 N N N 45.220 7.523 5.622 -4.591 3.091 0.363 CAH DRK 5 DRK CAE CAE C 0 1 N N N 46.107 6.543 6.041 -4.667 3.072 1.742 CAE DRK 6 DRK CAG CAG C 0 1 N N N 47.069 6.077 5.154 -4.024 2.088 2.476 CAG DRK 7 DRK CAK CAK C 0 1 N N N 47.160 6.575 3.855 -3.293 1.107 1.833 CAK DRK 8 DRK CAZ CAZ C 0 1 N N N 46.278 7.561 3.424 -3.205 1.111 0.444 CAZ DRK 9 DRK CAV CAV C 0 1 N N N 46.083 8.268 2.226 -2.535 0.238 -0.536 CAV DRK 10 DRK CAT CAT C 0 1 Y N N 46.746 8.256 0.972 -1.770 -0.886 -0.288 CAT DRK 11 DRK NAQ NAQ N 0 1 Y N N 46.453 9.080 -0.036 -2.240 -2.131 0.081 NAQ DRK 12 DRK CAX CAX C 0 1 Y N N 47.222 8.864 -1.103 -1.173 -3.000 0.238 CAX DRK 13 DRK CAI CAI C 0 1 Y N N 47.261 9.472 -2.358 -1.121 -4.343 0.595 CAI DRK 14 DRK CAD CAD C 0 1 Y N N 48.188 9.054 -3.305 0.097 -4.988 0.681 CAD DRK 15 DRK CAF CAF C 0 1 Y N N 49.070 8.014 -2.994 1.278 -4.310 0.413 CAF DRK 16 DRK CAJ CAJ C 0 1 Y N N 49.029 7.398 -1.743 1.254 -2.991 0.060 CAJ DRK 17 DRK CAY CAY C 0 1 Y N N 48.100 7.833 -0.794 0.028 -2.314 -0.034 CAY DRK 18 DRK CAU CAU C 0 1 Y N N 47.801 7.460 0.507 -0.305 -0.979 -0.376 CAU DRK 19 DRK NAO NAO N 0 1 N N N 48.435 6.489 1.149 0.558 0.018 -0.709 NAO DRK 20 DRK OAR OAR O 0 1 N N N 49.112 5.510 0.468 1.847 -0.160 -0.041 OAR DRK 21 DRK CAM CAM C 0 1 N N N 49.825 4.581 1.334 2.805 0.855 -0.347 CAM DRK 22 DRK CAN CAN C 0 1 N N N 50.643 5.314 2.418 4.108 0.570 0.403 CAN DRK 23 DRK CBA CBA C 0 1 N N S 52.147 5.169 2.193 5.134 1.657 0.075 CBA DRK 24 DRK OAC OAC O 0 1 N N N 52.776 5.355 3.469 5.473 1.589 -1.311 OAC DRK 25 DRK CAL CAL C 0 1 N N N 52.661 6.216 1.160 6.392 1.442 0.919 CAL DRK 26 DRK OAB OAB O 0 1 N N N 52.698 5.705 -0.201 7.303 2.521 0.699 OAB DRK 27 DRK HAH HAH H 0 1 N N N 44.465 7.893 6.300 -5.098 3.865 -0.195 HAH DRK 28 DRK HAE HAE H 0 1 N N N 46.051 6.147 7.044 -5.235 3.834 2.255 HAE DRK 29 DRK HAG HAG H 0 1 N N N 47.761 5.313 5.477 -4.094 2.088 3.553 HAG DRK 30 DRK HAK HAK H 0 1 N N N 47.915 6.195 3.183 -2.792 0.341 2.407 HAK DRK 31 DRK HAI HAI H 0 1 N N N 46.570 10.268 -2.594 -2.033 -4.881 0.806 HAI DRK 32 DRK HAD HAD H 0 1 N N N 48.227 9.529 -4.274 0.131 -6.030 0.960 HAD DRK 33 DRK HAF HAF H 0 1 N N N 49.789 7.685 -3.729 2.222 -4.829 0.485 HAF DRK 34 DRK HAJ HAJ H 0 1 N N N 49.709 6.592 -1.510 2.176 -2.469 -0.147 HAJ DRK 35 DRK HNAO HNAO H 0 0 N N N 49.118 6.943 1.721 0.674 0.076 -1.710 HNAO DRK 36 DRK HAM HAM H 0 1 N N N 49.091 3.928 1.829 2.997 0.862 -1.420 HAM DRK 37 DRK HAMA HAMA H 0 0 N N N 50.524 4.002 0.712 2.416 1.827 -0.041 HAMA DRK 38 DRK HAN HAN H 0 1 N N N 50.385 6.383 2.391 3.916 0.563 1.476 HAN DRK 39 DRK HANA HANA H 0 0 N N N 50.398 4.866 3.392 4.498 -0.401 0.098 HANA DRK 40 DRK HBA HBA H 0 1 N N N 52.386 4.178 1.780 4.710 2.636 0.298 HBA DRK 41 DRK HOAC HOAC H 0 0 N N N 53.718 5.396 3.355 5.857 0.744 -1.582 HOAC DRK 42 DRK HAL HAL H 0 1 N N N 51.986 7.084 1.184 6.120 1.405 1.974 HAL DRK 43 DRK HALA HALA H 0 0 N N N 53.691 6.479 1.442 6.865 0.503 0.632 HALA DRK 44 DRK HOAB HOAB H 0 0 N N N 52.706 6.432 -0.813 8.125 2.450 1.204 HOAB DRK 45 DRK HNAQ HNAQ H 0 0 N N N 45.739 9.779 0.005 -3.173 -2.362 0.211 HNAQ DRK 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DRK OAA CAS DOUB N N 1 DRK CAS NAP SING N N 2 DRK NAP CAW DOUB N N 3 DRK CAW CAH SING N N 4 DRK CAH CAE DOUB N N 5 DRK CAH HAH SING N N 6 DRK CAE HAE SING N N 7 DRK CAG CAE SING N N 8 DRK CAG HAG SING N N 9 DRK CAK CAG DOUB N N 10 DRK CAK HAK SING N N 11 DRK CAZ CAW SING N N 12 DRK CAZ CAK SING N N 13 DRK CAV CAS SING N N 14 DRK CAV CAZ DOUB N N 15 DRK CAT CAV SING N N 16 DRK NAQ CAT SING Y N 17 DRK NAQ HNAQ SING N N 18 DRK CAX NAQ SING Y N 19 DRK CAX CAY SING Y N 20 DRK CAI CAX DOUB Y N 21 DRK CAI HAI SING N N 22 DRK CAD CAI SING Y N 23 DRK CAD CAF DOUB Y N 24 DRK CAD HAD SING N N 25 DRK CAF CAJ SING Y N 26 DRK CAF HAF SING N N 27 DRK CAJ CAY DOUB Y N 28 DRK CAJ HAJ SING N N 29 DRK CAY CAU SING Y N 30 DRK CAU CAT DOUB Y N 31 DRK CAU NAO SING N N 32 DRK NAO HNAO SING N N 33 DRK OAR NAO SING N N 34 DRK OAR CAM SING N N 35 DRK CAM CAN SING N N 36 DRK CAM HAM SING N N 37 DRK CAM HAMA SING N N 38 DRK CAN HAN SING N N 39 DRK CAN HANA SING N N 40 DRK CBA CAN SING N N 41 DRK CBA OAC SING N N 42 DRK CBA HBA SING N N 43 DRK OAC HOAC SING N N 44 DRK CAL CBA SING N N 45 DRK CAL HAL SING N N 46 DRK CAL HALA SING N N 47 DRK OAB CAL SING N N 48 DRK OAB HOAB SING N N 49 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DRK SMILES ACDLabs 10.04 "O=C2N=C1C=CC=CC1=C2c4c(NOCCC(O)CO)c3ccccc3n4" DRK SMILES_CANONICAL CACTVS 3.341 "OC[C@@H](O)CCONc1c([nH]c2ccccc12)C3=C4C=CC=CC4=NC3=O" DRK SMILES CACTVS 3.341 "OC[CH](O)CCONc1c([nH]c2ccccc12)C3=C4C=CC=CC4=NC3=O" DRK SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)c(c([nH]2)C3=C4C=CC=CC4=NC3=O)NOCC[C@@H](CO)O" DRK SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)c(c([nH]2)C3=C4C=CC=CC4=NC3=O)NOCCC(CO)O" DRK InChI InChI 1.03 "InChI=1S/C20H19N3O4/c24-11-12(25)9-10-27-23-18-14-6-2-4-8-16(14)21-19(18)17-13-5-1-3-7-15(13)22-20(17)26/h1-8,12,21,23-25H,9-11H2/t12-/m0/s1" DRK InChIKey InChI 1.03 CKLAPOFDFZKCPB-LBPRGKRZSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DRK "SYSTEMATIC NAME" ACDLabs 10.04 "3-({[(3S)-3,4-dihydroxybutyl]oxy}amino)-1H,2'H-2,3'-biindol-2'-one" DRK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3-[3-[[(3S)-3,4-dihydroxybutoxy]amino]-1H-indol-2-yl]indol-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DRK "Create component" 2008-09-10 RCSB DRK "Modify descriptor" 2011-06-04 RCSB DRK "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DRK _pdbx_chem_comp_synonyms.name Indirubin_E804 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##