data_DSD # _chem_comp.id DSD _chem_comp.name "7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H20 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 232.277 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DSD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1DAF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DSD C1 C1 C 0 1 N N N -6.641 28.169 7.056 -0.221 0.087 -5.292 C1 DSD 1 DSD O1 O1 O 0 1 N N N -7.405 27.488 6.352 -1.278 0.628 -5.068 O1 DSD 2 DSD O2 O2 O 0 1 N N N -5.869 28.999 6.579 0.148 -0.164 -6.557 O2 DSD 3 DSD C2 C2 C 0 1 N N N -6.586 27.969 8.567 0.681 -0.303 -4.151 C2 DSD 4 DSD C3 C3 C 0 1 N N N -5.783 26.740 8.947 0.028 0.093 -2.825 C3 DSD 5 DSD C4 C4 C 0 1 N N N -5.691 26.501 10.441 0.945 -0.303 -1.666 C4 DSD 6 DSD C5 C5 C 0 1 N N N -4.585 25.489 10.693 0.293 0.092 -0.340 C5 DSD 7 DSD C6 C6 C 0 1 N N N -4.504 25.165 12.170 1.209 -0.304 0.818 C6 DSD 8 DSD C7 C7 C 0 1 N N R -3.272 24.398 12.662 0.557 0.092 2.143 C7 DSD 9 DSD C8 C8 C 0 1 N N S -3.274 22.936 12.149 1.474 -0.304 3.302 C8 DSD 10 DSD C9 C9 C 0 1 N N N -4.481 22.157 12.673 0.821 0.091 4.628 C9 DSD 11 DSD N7 N7 N 0 1 N N N -3.301 24.438 14.125 -0.728 -0.596 2.280 N7 DSD 12 DSD C C C 0 1 N N N -2.209 24.697 14.872 -1.730 -0.020 2.974 C DSD 13 DSD O O O 0 1 N N N -1.196 25.185 14.373 -1.567 1.069 3.486 O DSD 14 DSD OXT OXT O 0 1 N N N -2.279 24.481 16.077 -2.912 -0.653 3.099 OXT DSD 15 DSD N8 N8 N 0 1 N N N -2.034 22.344 12.642 2.763 0.385 3.165 N8 DSD 16 DSD HO2 HO2 H 0 1 N N N -5.284 29.519 7.117 -0.431 0.086 -7.289 HO2 DSD 17 DSD H21 1H2 H 0 1 N N N -6.200 28.879 9.082 1.638 0.208 -4.252 H21 DSD 18 DSD H22 2H2 H 0 1 N N N -7.609 27.936 9.008 0.842 -1.381 -4.168 H22 DSD 19 DSD H31 1H3 H 0 1 N N N -6.182 25.836 8.429 -0.928 -0.419 -2.723 H31 DSD 20 DSD H32 2H3 H 0 1 N N N -4.765 26.782 8.494 -0.132 1.171 -2.807 H32 DSD 21 DSD H41 1H4 H 0 1 N N N -5.550 27.443 11.019 1.902 0.208 -1.768 H41 DSD 22 DSD H42 2H4 H 0 1 N N N -6.665 26.193 10.887 1.106 -1.381 -1.683 H42 DSD 23 DSD H51 1H5 H 0 1 N N N -4.708 24.572 10.070 -0.663 -0.419 -0.239 H51 DSD 24 DSD H52 2H5 H 0 1 N N N -3.605 25.831 10.286 0.131 1.170 -0.323 H52 DSD 25 DSD H61 1H6 H 0 1 N N N -4.611 26.105 12.759 2.166 0.207 0.716 H61 DSD 26 DSD H62 2H6 H 0 1 N N N -5.425 24.617 12.477 1.371 -1.382 0.800 H62 DSD 27 DSD H7 H7 H 0 1 N N N -2.339 24.867 12.269 0.396 1.170 2.161 H7 DSD 28 DSD H8 H8 H 0 1 N N N -3.341 22.904 11.036 1.635 -1.382 3.285 H8 DSD 29 DSD H91 1H9 H 0 1 N N N -4.482 21.104 12.303 1.474 -0.191 5.453 H91 DSD 30 DSD H92 2H9 H 0 1 N N N -4.540 22.198 13.785 0.660 1.169 4.645 H92 DSD 31 DSD H93 3H9 H 0 1 N N N -5.437 22.675 12.429 -0.135 -0.420 4.729 H93 DSD 32 DSD HN7 HN7 H 0 1 N N N -4.149 24.272 14.666 -0.858 -1.466 1.871 HN7 DSD 33 DSD HXT HXT H 0 1 N N N -1.509 24.663 16.603 -3.631 -0.240 3.597 HXT DSD 34 DSD HN81 1HN8 H 0 0 N N N -2.035 21.381 12.304 2.566 1.374 3.186 HN81 DSD 35 DSD HN82 2HN8 H 0 0 N N N -1.916 22.423 13.652 3.293 0.177 3.998 HN82 DSD 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DSD C1 O1 DOUB N N 1 DSD C1 O2 SING N N 2 DSD C1 C2 SING N N 3 DSD O2 HO2 SING N N 4 DSD C2 C3 SING N N 5 DSD C2 H21 SING N N 6 DSD C2 H22 SING N N 7 DSD C3 C4 SING N N 8 DSD C3 H31 SING N N 9 DSD C3 H32 SING N N 10 DSD C4 C5 SING N N 11 DSD C4 H41 SING N N 12 DSD C4 H42 SING N N 13 DSD C5 C6 SING N N 14 DSD C5 H51 SING N N 15 DSD C5 H52 SING N N 16 DSD C6 C7 SING N N 17 DSD C6 H61 SING N N 18 DSD C6 H62 SING N N 19 DSD C7 C8 SING N N 20 DSD C7 N7 SING N N 21 DSD C7 H7 SING N N 22 DSD C8 C9 SING N N 23 DSD C8 N8 SING N N 24 DSD C8 H8 SING N N 25 DSD C9 H91 SING N N 26 DSD C9 H92 SING N N 27 DSD C9 H93 SING N N 28 DSD N7 C SING N N 29 DSD N7 HN7 SING N N 30 DSD C O DOUB N N 31 DSD C OXT SING N N 32 DSD OXT HXT SING N N 33 DSD N8 HN81 SING N N 34 DSD N8 HN82 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DSD SMILES ACDLabs 10.04 "O=C(O)CCCCCC(NC(=O)O)C(N)C" DSD SMILES_CANONICAL CACTVS 3.341 "C[C@H](N)[C@@H](CCCCCC(O)=O)NC(O)=O" DSD SMILES CACTVS 3.341 "C[CH](N)[CH](CCCCCC(O)=O)NC(O)=O" DSD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H]([C@@H](CCCCCC(=O)O)NC(=O)O)N" DSD SMILES "OpenEye OEToolkits" 1.5.0 "CC(C(CCCCCC(=O)O)NC(=O)O)N" DSD InChI InChI 1.03 "InChI=1S/C10H20N2O4/c1-7(11)8(12-10(15)16)5-3-2-4-6-9(13)14/h7-8,12H,2-6,11H2,1H3,(H,13,14)(H,15,16)/t7-,8+/m0/s1" DSD InChIKey InChI 1.03 OQNJZSIPDMTUAJ-JGVFFNPUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DSD "SYSTEMATIC NAME" ACDLabs 10.04 "(7R,8S)-8-amino-7-(carboxyamino)nonanoic acid" DSD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(7R,8S)-8-amino-7-(carboxyamino)nonanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DSD "Create component" 1999-07-08 RCSB DSD "Modify descriptor" 2011-06-04 RCSB #