data_DV5 # _chem_comp.id DV5 _chem_comp.name "(2~{S},4~{R})-1-[(2~{S})-2-acetamidopropanethioyl]-~{N}-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H26 N4 O3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-02-01 _chem_comp.pdbx_modified_date 2018-04-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 446.586 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DV5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6FMJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DV5 CAA C1 C 0 1 N N N 10.663 54.482 95.883 8.133 2.843 -0.654 CAA DV5 1 DV5 CAT C2 C 0 1 N N N 11.632 54.553 94.700 7.527 1.496 -0.354 CAT DV5 2 DV5 OAD O1 O 0 1 N N N 11.978 55.639 94.237 8.231 0.508 -0.324 OAD DV5 3 DV5 NAR N1 N 0 1 N N N 12.027 53.363 94.226 6.204 1.389 -0.121 NAR DV5 4 DV5 CBB C3 C 0 1 N N S 12.957 53.256 93.090 5.615 0.079 0.170 CBB DV5 5 DV5 CAC C4 C 0 1 N N N 13.495 51.822 93.031 5.754 -0.222 1.663 CAC DV5 6 DV5 CAV C5 C 0 1 N N N 12.276 53.558 91.734 4.156 0.090 -0.207 CAV DV5 7 DV5 SAG S1 S 0 1 N N N 10.690 53.131 91.571 3.499 1.412 -0.821 SAG DV5 8 DV5 N N2 N 0 1 N N N 12.988 54.072 90.706 3.406 -1.015 -0.027 N DV5 9 DV5 CD2 C6 C 0 1 N N N 14.413 54.502 90.779 3.882 -2.296 0.527 CD2 DV5 10 DV5 CG C7 C 0 1 N N R 14.626 55.432 89.607 2.901 -3.357 -0.030 CG DV5 11 DV5 OD1 O2 O 0 1 N N N 14.220 56.755 89.953 3.249 -3.726 -1.366 OD1 DV5 12 DV5 CB C8 C 0 1 N N N 13.697 54.895 88.550 1.555 -2.585 0.001 CB DV5 13 DV5 CA C9 C 0 1 N N S 12.487 54.355 89.303 1.976 -1.141 -0.344 CA DV5 14 DV5 C C10 C 0 1 N N N 12.079 53.189 88.634 1.174 -0.164 0.477 C DV5 15 DV5 O O3 O 0 1 N N N 12.568 52.105 88.948 1.735 0.582 1.251 O DV5 16 DV5 NAQ N3 N 0 1 N N N 11.175 53.320 87.639 -0.167 -0.119 0.351 NAQ DV5 17 DV5 CAM C11 C 0 1 N N N 10.725 52.155 86.866 -0.947 0.831 1.149 CAM DV5 18 DV5 CAX C12 C 0 1 Y N N 11.528 51.986 85.719 -2.410 0.679 0.823 CAX DV5 19 DV5 CAI C13 C 0 1 Y N N 11.508 50.747 85.075 -3.188 -0.210 1.543 CAI DV5 20 DV5 CAK C14 C 0 1 Y N N 12.279 50.499 83.939 -4.528 -0.354 1.249 CAK DV5 21 DV5 CAH C15 C 0 1 Y N N 12.346 52.980 85.171 -2.971 1.434 -0.192 CAH DV5 22 DV5 CAJ C16 C 0 1 Y N N 13.117 52.732 84.033 -4.310 1.300 -0.495 CAJ DV5 23 DV5 CAY C17 C 0 1 Y N N 13.092 51.495 83.389 -5.099 0.401 0.223 CAY DV5 24 DV5 CAZ C18 C 0 1 Y N N 13.839 51.292 82.293 -6.535 0.252 -0.098 CAZ DV5 25 DV5 SAS S2 S 0 1 Y N N 15.420 51.823 82.111 -7.863 0.257 1.060 SAS DV5 26 DV5 CAL C19 C 0 1 Y N N 15.616 51.224 80.562 -8.985 0.041 -0.211 CAL DV5 27 DV5 NAP N4 N 0 1 Y N N 14.468 50.639 80.215 -8.372 -0.021 -1.346 NAP DV5 28 DV5 CAW C20 C 0 1 Y N N 13.504 50.678 81.144 -7.063 0.094 -1.331 CAW DV5 29 DV5 CAB C21 C 0 1 N N N 12.155 50.028 80.818 -6.222 0.041 -2.580 CAB DV5 30 DV5 H1 H1 H 0 1 N N N 10.381 55.500 96.188 8.114 3.019 -1.729 H1 DV5 31 DV5 H2 H2 H 0 1 N N N 9.762 53.925 95.586 7.559 3.620 -0.148 H2 DV5 32 DV5 H3 H3 H 0 1 N N N 11.150 53.969 96.725 9.164 2.865 -0.300 H3 DV5 33 DV5 H4 H4 H 0 1 N N N 11.682 52.528 94.654 5.642 2.179 -0.146 H4 DV5 34 DV5 H5 H5 H 0 1 N N N 13.799 53.950 93.228 6.134 -0.688 -0.406 H5 DV5 35 DV5 H6 H6 H 0 1 N N N 13.987 51.575 93.983 5.236 0.545 2.238 H6 DV5 36 DV5 H7 H7 H 0 1 N N N 12.662 51.125 92.857 5.316 -1.196 1.880 H7 DV5 37 DV5 H8 H8 H 0 1 N N N 14.222 51.737 92.210 6.810 -0.229 1.936 H8 DV5 38 DV5 H9 H9 H 0 1 N N N 15.080 53.631 90.702 4.897 -2.502 0.188 H9 DV5 39 DV5 H10 H10 H 0 1 N N N 14.606 55.029 91.725 3.843 -2.276 1.616 H10 DV5 40 DV5 H11 H11 H 0 1 N N N 15.671 55.396 89.265 2.864 -4.233 0.618 H11 DV5 41 DV5 H12 H12 H 0 1 N N N 14.802 57.101 90.620 4.127 -4.124 -1.447 H12 DV5 42 DV5 H13 H13 H 0 1 N N N 14.186 54.090 87.982 0.865 -2.974 -0.747 H13 DV5 43 DV5 H14 H14 H 0 1 N N N 13.394 55.698 87.862 1.113 -2.631 0.996 H14 DV5 44 DV5 H15 H15 H 0 1 N N N 11.690 55.112 89.330 1.819 -0.952 -1.406 H15 DV5 45 DV5 H16 H16 H 0 1 N N N 10.806 54.225 87.425 -0.616 -0.715 -0.268 H16 DV5 46 DV5 H17 H17 H 0 1 N N N 9.680 52.306 86.558 -0.788 0.631 2.209 H17 DV5 47 DV5 H18 H18 H 0 1 N N N 10.795 51.254 87.494 -0.627 1.847 0.920 H18 DV5 48 DV5 H19 H19 H 0 1 N N N 10.880 49.961 85.466 -2.745 -0.794 2.336 H19 DV5 49 DV5 H20 H20 H 0 1 N N N 12.247 49.523 83.477 -5.134 -1.049 1.811 H20 DV5 50 DV5 H21 H21 H 0 1 N N N 12.382 53.954 85.635 -2.359 2.129 -0.748 H21 DV5 51 DV5 H22 H22 H 0 1 N N N 13.748 53.517 83.642 -4.747 1.890 -1.288 H22 DV5 52 DV5 H23 H23 H 0 1 N N N 16.506 51.297 79.955 -10.055 -0.035 -0.083 H23 DV5 53 DV5 H24 H24 H 0 1 N N N 12.188 49.601 79.805 -6.029 1.054 -2.931 H24 DV5 54 DV5 H25 H25 H 0 1 N N N 11.948 49.229 81.545 -5.276 -0.454 -2.360 H25 DV5 55 DV5 H26 H26 H 0 1 N N N 11.360 50.787 80.870 -6.753 -0.517 -3.352 H26 DV5 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DV5 NAP CAL DOUB Y N 1 DV5 NAP CAW SING Y N 2 DV5 CAL SAS SING Y N 3 DV5 CAB CAW SING N N 4 DV5 CAW CAZ DOUB Y N 5 DV5 SAS CAZ SING Y N 6 DV5 CAZ CAY SING N N 7 DV5 CAY CAK DOUB Y N 8 DV5 CAY CAJ SING Y N 9 DV5 CAK CAI SING Y N 10 DV5 CAJ CAH DOUB Y N 11 DV5 CAI CAX DOUB Y N 12 DV5 CAH CAX SING Y N 13 DV5 CAX CAM SING N N 14 DV5 CAM NAQ SING N N 15 DV5 NAQ C SING N N 16 DV5 CB CA SING N N 17 DV5 CB CG SING N N 18 DV5 C O DOUB N N 19 DV5 C CA SING N N 20 DV5 CA N SING N N 21 DV5 CG OD1 SING N N 22 DV5 CG CD2 SING N N 23 DV5 N CD2 SING N N 24 DV5 N CAV SING N N 25 DV5 SAG CAV DOUB N N 26 DV5 CAV CBB SING N N 27 DV5 CAC CBB SING N N 28 DV5 CBB NAR SING N N 29 DV5 NAR CAT SING N N 30 DV5 OAD CAT DOUB N N 31 DV5 CAT CAA SING N N 32 DV5 CAA H1 SING N N 33 DV5 CAA H2 SING N N 34 DV5 CAA H3 SING N N 35 DV5 NAR H4 SING N N 36 DV5 CBB H5 SING N N 37 DV5 CAC H6 SING N N 38 DV5 CAC H7 SING N N 39 DV5 CAC H8 SING N N 40 DV5 CD2 H9 SING N N 41 DV5 CD2 H10 SING N N 42 DV5 CG H11 SING N N 43 DV5 OD1 H12 SING N N 44 DV5 CB H13 SING N N 45 DV5 CB H14 SING N N 46 DV5 CA H15 SING N N 47 DV5 NAQ H16 SING N N 48 DV5 CAM H17 SING N N 49 DV5 CAM H18 SING N N 50 DV5 CAI H19 SING N N 51 DV5 CAK H20 SING N N 52 DV5 CAH H21 SING N N 53 DV5 CAJ H22 SING N N 54 DV5 CAL H23 SING N N 55 DV5 CAB H24 SING N N 56 DV5 CAB H25 SING N N 57 DV5 CAB H26 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DV5 InChI InChI 1.03 "InChI=1S/C21H26N4O3S2/c1-12-19(30-11-23-12)16-6-4-15(5-7-16)9-22-20(28)18-8-17(27)10-25(18)21(29)13(2)24-14(3)26/h4-7,11,13,17-18,27H,8-10H2,1-3H3,(H,22,28)(H,24,26)/t13-,17+,18-/m0/s1" DV5 InChIKey InChI 1.03 WHYNNQMYHZONCV-VHSSKADRSA-N DV5 SMILES_CANONICAL CACTVS 3.385 "C[C@H](NC(C)=O)C(=S)N1C[C@H](O)C[C@H]1C(=O)NCc2ccc(cc2)c3scnc3C" DV5 SMILES CACTVS 3.385 "C[CH](NC(C)=O)C(=S)N1C[CH](O)C[CH]1C(=O)NCc2ccc(cc2)c3scnc3C" DV5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1c(scn1)c2ccc(cc2)CNC(=O)[C@@H]3C[C@H](CN3C(=S)[C@H](C)NC(=O)C)O" DV5 SMILES "OpenEye OEToolkits" 2.0.6 "Cc1c(scn1)c2ccc(cc2)CNC(=O)C3CC(CN3C(=S)C(C)NC(=O)C)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DV5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S},4~{R})-1-[(2~{S})-2-acetamidopropanethioyl]-~{N}-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DV5 "Create component" 2018-02-01 EBI DV5 "Initial release" 2018-04-11 RCSB #