data_E3R # _chem_comp.id E3R _chem_comp.name "7-[(6aR,9R,10aR)-1-Hydroxy-9-(hydroxymethyl)-6,6-dimethyl-6a,7,8,9,10,10a-hexahydro-6H-benzo[c]chromen-3-yl]- 7-methyloctanenitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H37 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-17 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 399.566 _chem_comp.one_letter_code ? _chem_comp.three_letter_code E3R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6KPF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal E3R C1 C1 C 0 1 Y N N 111.573 110.761 126.181 0.038 -1.806 0.225 C1 E3R 1 E3R C2 C2 C 0 1 Y N N 110.931 111.647 125.339 1.022 -0.853 0.065 C2 E3R 2 E3R C3 C3 C 0 1 Y N N 110.033 111.277 124.356 0.681 0.454 -0.226 C3 E3R 3 E3R C4 C4 C 0 1 Y N N 109.866 109.888 124.333 -0.654 0.804 -0.362 C4 E3R 4 E3R C5 C5 C 0 1 Y N N 110.465 108.877 125.157 -1.647 -0.153 -0.206 C5 E3R 5 E3R N1 N1 N 0 1 N N N 105.830 111.822 129.648 10.563 1.015 0.078 N1 E3R 6 E3R C10 C6 C 0 1 N N N 108.980 106.739 124.611 -3.373 1.629 0.177 C10 E3R 7 E3R C11 C7 C 0 1 N N R 108.631 105.255 124.655 -4.842 1.972 -0.097 C11 E3R 8 E3R C12 C8 C 0 1 N N N 108.827 104.816 126.112 -5.756 0.940 0.562 C12 E3R 9 E3R C13 C9 C 0 1 N N N 110.153 105.289 126.748 -5.436 -0.464 0.036 C13 E3R 10 E3R C14 C10 C 0 1 N N N 107.165 105.116 124.246 -5.153 3.359 0.469 C14 E3R 11 E3R C15 C11 C 0 1 N N N 111.934 106.741 128.604 -4.522 -3.215 0.488 C15 E3R 12 E3R C16 C12 C 0 1 N N N 112.866 106.362 126.303 -3.677 -2.246 -1.658 C16 E3R 13 E3R C17 C13 C 0 1 N N N 111.257 113.150 125.523 2.472 -1.237 0.209 C17 E3R 14 E3R C18 C14 C 0 1 N N N 110.860 113.606 126.961 3.351 -0.004 -0.015 C18 E3R 15 E3R C19 C15 C 0 1 N N N 110.534 114.030 124.482 2.717 -1.789 1.615 C19 E3R 16 E3R C20 C16 C 0 1 N N N 112.769 113.331 125.312 2.822 -2.307 -0.827 C20 E3R 17 E3R C21 C17 C 0 1 N N N 109.335 113.638 127.095 4.823 -0.395 0.131 C21 E3R 18 E3R C22 C18 C 0 1 N N N 108.904 113.107 128.469 5.702 0.838 -0.093 C22 E3R 19 E3R C23 C19 C 0 1 N N N 108.200 114.232 129.240 7.174 0.448 0.053 C23 E3R 20 E3R C24 C20 C 0 1 N N N 107.506 113.640 130.486 8.053 1.680 -0.170 C24 E3R 21 E3R C25 C21 C 0 1 N N N 106.589 112.609 130.026 9.469 1.305 -0.030 C25 E3R 22 E3R C6 C22 C 0 1 Y N N 111.382 109.378 126.136 -1.304 -1.463 0.090 C6 E3R 23 E3R C7 C23 C 0 1 N N R 110.303 107.341 125.150 -3.086 0.237 -0.377 C7 E3R 24 E3R C8 C24 C 0 1 N N R 110.417 106.811 126.610 -3.975 -0.779 0.346 C8 E3R 25 E3R C9 C25 C 0 1 N N N 111.823 107.128 127.125 -3.586 -2.177 -0.132 C9 E3R 26 E3R O1 O1 O 0 1 N N N 112.057 108.559 127.008 -2.240 -2.430 0.276 O1 E3R 27 E3R O2 O2 O 0 1 N N N 106.783 103.751 124.214 -6.486 3.731 0.114 O2 E3R 28 E3R O3 O3 O 0 1 N N N 108.971 109.583 123.340 -0.992 2.089 -0.649 O3 E3R 29 E3R H1 H1 H 0 1 N N N 112.260 111.159 126.914 0.311 -2.826 0.452 H1 E3R 30 E3R H2 H2 H 0 1 N N N 109.529 111.966 123.695 1.452 1.201 -0.348 H2 E3R 31 E3R H3 H3 H 0 1 N N N 108.936 107.023 123.549 -2.729 2.358 -0.314 H3 E3R 32 E3R H4 H4 H 0 1 N N N 108.176 107.249 125.161 -3.189 1.640 1.252 H4 E3R 33 E3R H5 H5 H 0 1 N N N 109.282 104.678 123.982 -5.017 1.976 -1.173 H5 E3R 34 E3R H6 H6 H 0 1 N N N 107.996 105.221 126.708 -5.608 0.963 1.641 H6 E3R 35 E3R H7 H7 H 0 1 N N N 108.802 103.717 126.147 -6.795 1.182 0.336 H7 E3R 36 E3R H8 H8 H 0 1 N N N 110.131 105.038 127.819 -6.080 -1.194 0.526 H8 E3R 37 E3R H9 H9 H 0 1 N N N 110.980 104.750 126.263 -5.600 -0.498 -1.041 H9 E3R 38 E3R H10 H10 H 0 1 N N N 107.025 105.554 123.247 -5.058 3.338 1.555 H10 E3R 39 E3R H11 H11 H 0 1 N N N 106.535 105.651 124.972 -4.451 4.085 0.058 H11 E3R 40 E3R H12 H12 H 0 1 N N N 111.183 107.295 129.186 -4.233 -4.212 0.154 H12 E3R 41 E3R H13 H13 H 0 1 N N N 111.760 105.661 128.714 -4.453 -3.163 1.575 H13 E3R 42 E3R H14 H14 H 0 1 N N N 112.940 106.990 128.973 -5.547 -3.011 0.179 H14 E3R 43 E3R H15 H15 H 0 1 N N N 113.873 106.595 126.679 -3.000 -1.512 -2.096 H15 E3R 44 E3R H16 H16 H 0 1 N N N 112.682 105.281 126.393 -3.398 -3.244 -1.995 H16 E3R 45 E3R H17 H17 H 0 1 N N N 112.791 106.660 125.247 -4.699 -2.029 -1.971 H17 E3R 46 E3R H18 H18 H 0 1 N N N 111.276 112.900 127.695 3.177 0.389 -1.016 H18 E3R 47 E3R H19 H19 H 0 1 N N N 111.264 114.612 127.149 3.102 0.758 0.723 H19 E3R 48 E3R H20 H20 H 0 1 N N N 109.446 113.925 124.604 2.091 -2.667 1.774 H20 E3R 49 E3R H21 H21 H 0 1 N N N 110.819 115.082 124.630 3.766 -2.067 1.718 H21 E3R 50 E3R H22 H22 H 0 1 N N N 110.822 113.711 123.469 2.468 -1.027 2.353 H22 E3R 51 E3R H23 H23 H 0 1 N N N 113.318 112.716 126.040 2.648 -1.913 -1.829 H23 E3R 52 E3R H24 H24 H 0 1 N N N 113.037 113.018 124.292 3.870 -2.585 -0.724 H24 E3R 53 E3R H25 H25 H 0 1 N N N 113.035 114.389 125.453 2.195 -3.185 -0.668 H25 E3R 54 E3R H26 H26 H 0 1 N N N 108.983 114.674 126.981 4.997 -0.788 1.133 H26 E3R 55 E3R H27 H27 H 0 1 N N N 108.889 113.011 126.309 5.072 -1.157 -0.607 H27 E3R 56 E3R H28 H28 H 0 1 N N N 108.213 112.261 128.338 5.528 1.231 -1.094 H28 E3R 57 E3R H29 H29 H 0 1 N N N 109.789 112.773 129.030 5.453 1.600 0.646 H29 E3R 58 E3R H30 H30 H 0 1 N N N 108.941 114.982 129.554 7.348 0.054 1.055 H30 E3R 59 E3R H31 H31 H 0 1 N N N 107.449 114.707 128.592 7.423 -0.315 -0.685 H31 E3R 60 E3R H32 H32 H 0 1 N N N 108.256 113.202 131.161 7.879 2.073 -1.172 H32 E3R 61 E3R H33 H33 H 0 1 N N N 106.951 114.427 131.016 7.804 2.443 0.568 H33 E3R 62 E3R H34 H34 H 0 1 N N N 111.133 106.913 124.569 -3.334 0.220 -1.439 H34 E3R 63 E3R H35 H35 H 0 1 N N N 109.685 107.348 127.231 -3.809 -0.706 1.421 H35 E3R 64 E3R H36 H36 H 0 1 N N N 105.871 103.683 123.958 -6.752 4.601 0.440 H36 E3R 65 E3R H37 H37 H 0 1 N N N 108.843 108.642 123.307 -1.049 2.279 -1.595 H37 E3R 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal E3R O3 C4 SING N N 1 E3R O2 C14 SING N N 2 E3R C14 C11 SING N N 3 E3R C4 C3 DOUB Y N 4 E3R C4 C5 SING Y N 5 E3R C3 C2 SING Y N 6 E3R C19 C17 SING N N 7 E3R C10 C11 SING N N 8 E3R C10 C7 SING N N 9 E3R C11 C12 SING N N 10 E3R C7 C5 SING N N 11 E3R C7 C8 SING N N 12 E3R C5 C6 DOUB Y N 13 E3R C20 C17 SING N N 14 E3R C2 C17 SING N N 15 E3R C2 C1 DOUB Y N 16 E3R C17 C18 SING N N 17 E3R C12 C13 SING N N 18 E3R C6 C1 SING Y N 19 E3R C6 O1 SING N N 20 E3R C16 C9 SING N N 21 E3R C8 C13 SING N N 22 E3R C8 C9 SING N N 23 E3R C18 C21 SING N N 24 E3R O1 C9 SING N N 25 E3R C21 C22 SING N N 26 E3R C9 C15 SING N N 27 E3R C22 C23 SING N N 28 E3R C23 C24 SING N N 29 E3R N1 C25 TRIP N N 30 E3R C25 C24 SING N N 31 E3R C1 H1 SING N N 32 E3R C3 H2 SING N N 33 E3R C10 H3 SING N N 34 E3R C10 H4 SING N N 35 E3R C11 H5 SING N N 36 E3R C12 H6 SING N N 37 E3R C12 H7 SING N N 38 E3R C13 H8 SING N N 39 E3R C13 H9 SING N N 40 E3R C14 H10 SING N N 41 E3R C14 H11 SING N N 42 E3R C15 H12 SING N N 43 E3R C15 H13 SING N N 44 E3R C15 H14 SING N N 45 E3R C16 H15 SING N N 46 E3R C16 H16 SING N N 47 E3R C16 H17 SING N N 48 E3R C18 H18 SING N N 49 E3R C18 H19 SING N N 50 E3R C19 H20 SING N N 51 E3R C19 H21 SING N N 52 E3R C19 H22 SING N N 53 E3R C20 H23 SING N N 54 E3R C20 H24 SING N N 55 E3R C20 H25 SING N N 56 E3R C21 H26 SING N N 57 E3R C21 H27 SING N N 58 E3R C22 H28 SING N N 59 E3R C22 H29 SING N N 60 E3R C23 H30 SING N N 61 E3R C23 H31 SING N N 62 E3R C24 H32 SING N N 63 E3R C24 H33 SING N N 64 E3R C7 H34 SING N N 65 E3R C8 H35 SING N N 66 E3R O2 H36 SING N N 67 E3R O3 H37 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor E3R InChI InChI 1.06 "InChI=1S/C25H37NO3/c1-24(2,11-7-5-6-8-12-26)18-14-21(28)23-19-13-17(16-27)9-10-20(19)25(3,4)29-22(23)15-18/h14-15,17,19-20,27-28H,5-11,13,16H2,1-4H3/t17-,19-,20-/m1/s1" E3R InChIKey InChI 1.06 FTYAKKNPQHUECV-MISYRCLQSA-N E3R SMILES_CANONICAL CACTVS 3.385 "CC(C)(CCCCCC#N)c1cc(O)c2[C@@H]3C[C@H](CO)CC[C@H]3C(C)(C)Oc2c1" E3R SMILES CACTVS 3.385 "CC(C)(CCCCCC#N)c1cc(O)c2[CH]3C[CH](CO)CC[CH]3C(C)(C)Oc2c1" E3R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2CC[C@H](C[C@H]2c3c(cc(cc3O1)C(C)(C)CCCCCC#N)O)CO)C" E3R SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C2CCC(CC2c3c(cc(cc3O1)C(C)(C)CCCCCC#N)O)CO)C" # _pdbx_chem_comp_identifier.comp_id E3R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(6~{a}~{R},9~{R},10~{a}~{R})-9-(hydroxymethyl)-6,6-dimethyl-1-oxidanyl-6~{a},7,8,9,10,10~{a}-hexahydrobenzo[c]chromen-3-yl]-7-methyl-octanenitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site E3R "Create component" 2022-04-17 PDBJ E3R "Modify name" 2022-04-19 PDBJ E3R "Initial release" 2022-04-27 RCSB E3R "Modify descriptor" 2022-08-22 RCSB #