data_E6L # _chem_comp.id E6L _chem_comp.name ;4-[(3-chloranyl-4-methoxy-phenyl)methylamino]-2-[(2S)-2-(hydroxymethyl)pyrrolidin-1-yl]-N-(pyrimidin-2-ylmethyl)pyrimid ine-5-carboxamide ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H26 Cl N7 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Avanafil _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-10-31 _chem_comp.pdbx_modified_date 2020-08-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 483.951 _chem_comp.one_letter_code ? _chem_comp.three_letter_code E6L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6L6E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal E6L C11 C1 C 0 1 Y N N 0.110 -28.871 -26.226 0.340 -0.881 0.198 C11 E6L 1 E6L C1 C2 C 0 1 N N N 0.306 -32.477 -32.805 -7.678 0.968 1.801 C1 E6L 2 E6L C3 C3 C 0 1 Y N N 0.147 -32.396 -30.449 -5.884 0.269 0.407 C3 E6L 3 E6L C4 C4 C 0 1 Y N N -0.440 -32.781 -29.273 -5.267 0.131 -0.830 C4 E6L 4 E6L C5 C5 C 0 1 Y N N 0.063 -32.271 -28.007 -4.021 -0.460 -0.917 C5 E6L 5 E6L C6 C6 C 0 1 Y N N 1.112 -31.426 -27.994 -3.388 -0.912 0.226 C6 E6L 6 E6L C7 C7 C 0 1 Y N N 1.717 -31.034 -29.181 -4.000 -0.776 1.458 C7 E6L 7 E6L C8 C8 C 0 1 Y N N 1.227 -31.532 -30.436 -5.246 -0.186 1.551 C8 E6L 8 E6L C9 C9 C 0 1 N N N 1.657 -30.867 -26.595 -2.028 -1.555 0.129 C9 E6L 9 E6L C13 C10 C 0 1 Y N N -2.042 -29.088 -25.445 1.976 -2.500 0.066 C13 E6L 10 E6L C15 C11 C 0 1 Y N N -1.434 -26.956 -26.230 2.681 -0.306 0.138 C15 E6L 11 E6L C16 C12 C 0 1 Y N N -0.171 -27.473 -26.509 1.347 0.109 0.205 C16 E6L 12 E6L C17 C13 C 0 1 N N N 0.860 -26.608 -27.090 1.002 1.538 0.281 C17 E6L 13 E6L C20 C14 C 0 1 N N N 1.599 -24.332 -27.948 1.625 3.893 0.246 C20 E6L 14 E6L C21 C15 C 0 1 Y N N 2.461 -23.496 -26.858 2.876 4.720 0.096 C21 E6L 15 E6L C23 C16 C 0 1 Y N N 3.882 -23.470 -25.032 4.348 5.823 -1.279 C23 E6L 16 E6L C24 C17 C 0 1 Y N N 3.909 -22.070 -25.070 5.095 6.189 -0.170 C24 E6L 17 E6L C25 C18 C 0 1 Y N N 3.177 -21.418 -26.048 4.661 5.779 1.081 C25 E6L 18 E6L C28 C19 C 0 1 N N N -4.425 -29.385 -24.272 1.803 -4.575 1.181 C28 E6L 19 E6L C29 C20 C 0 1 N N N -4.931 -30.438 -23.607 2.678 -5.853 1.202 C29 E6L 20 E6L C30 C21 C 0 1 N N N -3.617 -31.224 -23.048 4.063 -5.332 0.755 C30 E6L 21 E6L C31 C22 C 0 1 N N S -2.711 -31.172 -24.053 3.774 -4.022 -0.002 C31 E6L 22 E6L C32 C23 C 0 1 N N N -2.836 -32.368 -25.055 4.295 -4.124 -1.437 C32 E6L 23 E6L N10 N1 N 0 1 N N N 1.458 -29.440 -26.528 -0.992 -0.528 0.256 N10 E6L 24 E6L N12 N2 N 0 1 Y N N -0.857 -29.632 -25.692 0.698 -2.157 0.128 N12 E6L 25 E6L N14 N3 N 0 1 Y N N -2.344 -27.764 -25.702 2.949 -1.597 0.071 N14 E6L 26 E6L N19 N4 N 0 1 N N N 0.563 -25.150 -27.351 1.968 2.471 0.171 N19 E6L 27 E6L N22 N5 N 0 1 Y N N 3.134 -24.129 -25.961 3.256 5.096 -1.109 N22 E6L 28 E6L N26 N6 N 0 1 Y N N 2.471 -22.137 -26.922 3.558 5.053 1.174 N26 E6L 29 E6L N27 N7 N 0 1 N N N -3.067 -29.910 -24.862 2.306 -3.838 -0.006 N27 E6L 30 E6L O2 O1 O 0 1 N N N -0.365 -32.920 -31.702 -7.107 0.854 0.496 O2 E6L 31 E6L O18 O2 O 0 1 N N N 1.927 -27.048 -27.345 -0.155 1.877 0.442 O18 E6L 32 E6L O33 O3 O 0 1 N N N -2.338 -33.572 -24.429 3.758 -5.295 -2.056 O33 E6L 33 E6L CL1 CL1 CL 0 0 N N N -1.809 -33.882 -29.303 -6.062 0.698 -2.265 CL1 E6L 34 E6L H1 H1 H 0 1 N N N -0.141 -32.918 -33.708 -7.797 -0.025 2.234 H1 E6L 35 E6L H2 H2 H 0 1 N N N 0.238 -31.380 -32.860 -7.021 1.564 2.434 H2 E6L 36 E6L H3 H3 H 0 1 N N N 1.362 -32.776 -32.736 -8.652 1.452 1.730 H3 E6L 37 E6L H4 H4 H 0 1 N N N -0.403 -32.569 -27.080 -3.541 -0.568 -1.878 H4 E6L 38 E6L H5 H5 H 0 1 N N N 2.556 -30.354 -29.160 -3.503 -1.130 2.349 H5 E6L 39 E6L H6 H6 H 0 1 N N N 1.698 -31.234 -31.361 -5.724 -0.080 2.514 H6 E6L 40 E6L H7 H7 H 0 1 N N N 1.112 -31.351 -25.771 -1.915 -2.287 0.928 H7 E6L 41 E6L H8 H8 H 0 1 N N N 2.730 -31.091 -26.506 -1.930 -2.053 -0.836 H8 E6L 42 E6L H9 H9 H 0 1 N N N -1.667 -25.922 -26.439 3.481 0.420 0.141 H9 E6L 43 E6L H10 H10 H 0 1 N N N 2.283 -24.987 -28.507 1.163 4.105 1.211 H10 E6L 44 E6L H11 H11 H 0 1 N N N 1.126 -23.620 -28.641 0.928 4.142 -0.553 H11 E6L 45 E6L H12 H12 H 0 1 N N N 4.440 -24.014 -24.285 4.654 6.128 -2.269 H12 E6L 46 E6L H13 H13 H 0 1 N N N 4.489 -21.510 -24.351 5.991 6.782 -0.277 H13 E6L 47 E6L H14 H14 H 0 1 N N N 3.178 -20.339 -26.103 5.217 6.045 1.968 H14 E6L 48 E6L H15 H15 H 0 1 N N N -4.252 -28.540 -23.589 0.750 -4.831 1.056 H15 E6L 49 E6L H16 H16 H 0 1 N N N -5.104 -29.071 -25.078 1.950 -3.992 2.090 H16 E6L 50 E6L H17 H17 H 0 1 N N N -5.570 -30.105 -22.776 2.728 -6.269 2.208 H17 E6L 51 E6L H18 H18 H 0 1 N N N -5.514 -31.082 -24.282 2.298 -6.592 0.497 H18 E6L 52 E6L H19 H19 H 0 1 N N N -3.866 -32.268 -22.809 4.691 -5.135 1.624 H19 E6L 53 E6L H20 H20 H 0 1 N N N -3.224 -30.726 -22.150 4.544 -6.054 0.096 H20 E6L 54 E6L H21 H21 H 0 1 N N N -1.675 -31.103 -23.689 4.252 -3.185 0.507 H21 E6L 55 E6L H22 H22 H 0 1 N N N -2.246 -32.153 -25.958 3.987 -3.243 -1.999 H22 E6L 56 E6L H23 H23 H 0 1 N N N -3.892 -32.507 -25.331 5.383 -4.186 -1.425 H23 E6L 57 E6L H24 H24 H 0 1 N N N 2.077 -29.098 -25.821 -1.242 0.401 0.382 H24 E6L 58 E6L H25 H25 H 0 1 N N N -0.327 -24.759 -27.117 2.891 2.201 0.042 H25 E6L 59 E6L H26 H26 H 0 1 N N N -2.413 -34.299 -25.036 4.046 -5.424 -2.970 H26 E6L 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal E6L C1 O2 SING N N 1 E6L O2 C3 SING N N 2 E6L C3 C8 DOUB Y N 3 E6L C3 C4 SING Y N 4 E6L C8 C7 SING Y N 5 E6L CL1 C4 SING N N 6 E6L C4 C5 DOUB Y N 7 E6L C7 C6 DOUB Y N 8 E6L C5 C6 SING Y N 9 E6L C6 C9 SING N N 10 E6L C20 N19 SING N N 11 E6L C20 C21 SING N N 12 E6L N19 C17 SING N N 13 E6L O18 C17 DOUB N N 14 E6L C17 C16 SING N N 15 E6L N26 C21 DOUB Y N 16 E6L N26 C25 SING Y N 17 E6L C21 N22 SING Y N 18 E6L C9 N10 SING N N 19 E6L N10 C11 SING N N 20 E6L C16 C15 DOUB Y N 21 E6L C16 C11 SING Y N 22 E6L C15 N14 SING Y N 23 E6L C11 N12 DOUB Y N 24 E6L C25 C24 DOUB Y N 25 E6L N22 C23 DOUB Y N 26 E6L N14 C13 DOUB Y N 27 E6L N12 C13 SING Y N 28 E6L C13 N27 SING N N 29 E6L C24 C23 SING Y N 30 E6L C32 O33 SING N N 31 E6L C32 C31 SING N N 32 E6L N27 C28 SING N N 33 E6L N27 C31 SING N N 34 E6L C28 C29 SING N N 35 E6L C31 C30 SING N N 36 E6L C29 C30 SING N N 37 E6L C1 H1 SING N N 38 E6L C1 H2 SING N N 39 E6L C1 H3 SING N N 40 E6L C5 H4 SING N N 41 E6L C7 H5 SING N N 42 E6L C8 H6 SING N N 43 E6L C9 H7 SING N N 44 E6L C9 H8 SING N N 45 E6L C15 H9 SING N N 46 E6L C20 H10 SING N N 47 E6L C20 H11 SING N N 48 E6L C23 H12 SING N N 49 E6L C24 H13 SING N N 50 E6L C25 H14 SING N N 51 E6L C28 H15 SING N N 52 E6L C28 H16 SING N N 53 E6L C29 H17 SING N N 54 E6L C29 H18 SING N N 55 E6L C30 H19 SING N N 56 E6L C30 H20 SING N N 57 E6L C31 H21 SING N N 58 E6L C32 H22 SING N N 59 E6L C32 H23 SING N N 60 E6L N10 H24 SING N N 61 E6L N19 H25 SING N N 62 E6L O33 H26 SING N N 63 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor E6L InChI InChI 1.03 "InChI=1S/C23H26ClN7O3/c1-34-19-6-5-15(10-18(19)24)11-27-21-17(22(33)28-13-20-25-7-3-8-26-20)12-29-23(30-21)31-9-2-4-16(31)14-32/h3,5-8,10,12,16,32H,2,4,9,11,13-14H2,1H3,(H,28,33)(H,27,29,30)/t16-/m0/s1" E6L InChIKey InChI 1.03 WEAJZXNPAWBCOA-INIZCTEOSA-N E6L SMILES_CANONICAL CACTVS 3.385 "COc1ccc(CNc2nc(ncc2C(=O)NCc3ncccn3)N4CCC[C@H]4CO)cc1Cl" E6L SMILES CACTVS 3.385 "COc1ccc(CNc2nc(ncc2C(=O)NCc3ncccn3)N4CCC[CH]4CO)cc1Cl" E6L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1Cl)CNc2c(cnc(n2)N3CCC[C@H]3CO)C(=O)NCc4ncccn4" E6L SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1Cl)CNc2c(cnc(n2)N3CCCC3CO)C(=O)NCc4ncccn4" # _pdbx_chem_comp_identifier.comp_id E6L _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[(3-chloranyl-4-methoxy-phenyl)methylamino]-2-[(2~{S})-2-(hydroxymethyl)pyrrolidin-1-yl]-~{N}-(pyrimidin-2-ylmethyl)pyrimidine-5-carboxamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id E6L _pdbx_chem_comp_synonyms.name Avanafil _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site E6L "Create component" 2019-10-31 PDBJ E6L "Modify synonyms" 2020-06-05 PDBE E6L "Initial release" 2020-09-02 RCSB ##