data_EAD # _chem_comp.id EAD _chem_comp.name "{(2R,3S,4R,5R)-5-[(4S)-3-(AMINOCARBONYL)-4-(2-ETHYLISONICOTINOYL)PYRIDIN-1(4H)-YL]-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL}METHYL [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H36 N8 O15 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-ETHYL-ISONICOTINIC-ACYL-NICOTINAMIDE-ADENINE DINUCLEOTIDE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-06-14 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 798.588 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EAD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2H9I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EAD P1 P1 P 0 1 N N S -0.600 33.515 11.150 3.004 2.495 -1.962 P1 EAD 1 EAD O1 O1 O 0 1 N N N -0.936 32.137 10.624 3.757 2.215 -3.205 O1 EAD 2 EAD O2 O2 O 0 1 N N N 0.348 34.339 10.373 2.500 4.024 -1.973 O2 EAD 3 EAD O3 O3 O 0 1 N N N 0.052 33.541 12.668 3.961 2.256 -0.689 O3 EAD 4 EAD C1 C1 C 0 1 N N N -0.415 32.922 13.926 5.225 2.904 -0.532 C1 EAD 5 EAD C2 C2 C 0 1 N N R 0.295 31.742 14.578 5.869 2.454 0.780 C2 EAD 6 EAD O4 O4 O 0 1 N N N -0.522 30.502 14.637 6.203 1.058 0.708 O4 EAD 7 EAD C3 C3 C 0 1 N N S 1.496 31.241 13.807 7.182 3.227 1.012 C3 EAD 8 EAD O5 O5 O 0 1 N N N 2.627 31.992 14.203 7.115 3.973 2.229 O5 EAD 9 EAD C4 C4 C 0 1 N N R 1.593 29.820 14.188 8.261 2.122 1.112 C4 EAD 10 EAD O6 O6 O 0 1 N N N 2.885 29.311 14.513 9.199 2.417 2.149 O6 EAD 11 EAD C5 C5 C 0 1 N N R 0.482 29.777 15.253 7.415 0.874 1.471 C5 EAD 12 EAD N1 N1 N 0 1 Y N N 0.466 28.254 15.610 8.103 -0.352 1.059 N1 EAD 13 EAD C6 C6 C 0 1 Y N N -0.372 27.202 15.471 7.981 -0.980 -0.145 C6 EAD 14 EAD N2 N2 N 0 1 Y N N -0.379 26.337 16.487 8.734 -2.040 -0.172 N2 EAD 15 EAD C7 C7 C 0 1 Y N N 0.449 26.838 17.324 9.385 -2.161 1.010 C7 EAD 16 EAD C8 C8 C 0 1 Y N N 0.837 26.297 18.619 10.305 -3.081 1.543 C8 EAD 17 EAD N3 N3 N 0 1 N N N 0.349 25.285 18.932 10.733 -4.166 0.798 N3 EAD 18 EAD N4 N4 N 0 1 Y N N 1.743 26.995 19.386 10.753 -2.885 2.778 N4 EAD 19 EAD C9 C9 C 0 1 Y N N 2.299 28.189 18.974 10.351 -1.852 3.496 C9 EAD 20 EAD N5 N5 N 0 1 Y N N 1.975 28.728 17.760 9.491 -0.966 3.039 N5 EAD 21 EAD C10 C10 C 0 1 Y N N 1.004 28.040 16.868 8.993 -1.076 1.811 C10 EAD 22 EAD O7 O7 O 0 1 N N N -1.996 34.257 11.048 1.734 1.511 -1.871 O7 EAD 23 EAD P2 P2 P 0 1 N N R -2.630 35.561 11.708 0.668 0.958 -2.944 P2 EAD 24 EAD O8 O8 O 0 1 N N N -3.745 36.118 10.868 1.379 0.527 -4.168 O8 EAD 25 EAD O9 O9 O 0 1 N N N -1.401 36.384 11.934 -0.377 2.126 -3.313 O9 EAD 26 EAD O10 O10 O 0 1 N N N -3.201 35.025 13.100 -0.126 -0.294 -2.316 O10 EAD 27 EAD C11 C11 C 0 1 N N N -2.765 35.509 14.366 -1.067 -1.070 -3.059 C11 EAD 28 EAD C12 C12 C 0 1 N N R -3.930 35.737 15.323 -1.634 -2.176 -2.166 C12 EAD 29 EAD O11 O11 O 0 1 N N N -4.742 36.801 14.747 -2.420 -1.597 -1.110 O11 EAD 30 EAD C13 C13 C 0 1 N N S -4.924 34.551 15.598 -2.569 -3.085 -2.987 C13 EAD 31 EAD O12 O12 O 0 1 N N N -5.381 34.395 16.935 -2.089 -4.431 -2.982 O12 EAD 32 EAD C14 C14 C 0 1 N N R -6.007 34.840 14.603 -3.929 -2.992 -2.253 C14 EAD 33 EAD O13 O13 O 0 1 N N N -7.273 34.183 14.579 -4.561 -4.272 -2.186 O13 EAD 34 EAD C15 C15 C 0 1 N N R -6.095 36.343 14.724 -3.505 -2.511 -0.842 C15 EAD 35 EAD N6 N6 N 0 1 N N N -6.895 36.932 13.609 -4.612 -1.817 -0.179 N6 EAD 36 EAD C16 C16 C 0 1 N N N -6.538 36.895 12.202 -5.111 -2.298 0.999 C16 EAD 37 EAD C17 C17 C 0 1 N N N -7.417 37.484 11.218 -6.321 -1.905 1.438 C17 EAD 38 EAD C18 C18 C 0 1 N N N -7.052 37.470 9.698 -6.811 -2.411 2.665 C18 EAD 39 EAD O14 O14 O 0 1 N N N -5.996 36.957 9.289 -6.094 -3.098 3.370 O14 EAD 40 EAD N7 N7 N 0 1 N N N -7.946 38.051 8.884 -8.071 -2.132 3.053 N7 EAD 41 EAD C19 C19 C 0 1 N N S -8.686 38.105 11.681 -7.161 -0.940 0.652 C19 EAD 42 EAD C20 C20 C 0 1 N N N -8.947 38.129 13.115 -6.336 -0.231 -0.383 C20 EAD 43 EAD C21 C21 C 0 1 N N N -8.081 37.555 14.051 -5.149 -0.669 -0.744 C21 EAD 44 EAD C22 C22 C 0 1 N N N -9.955 37.232 11.181 -7.758 0.077 1.591 C22 EAD 45 EAD O15 O15 O 0 1 N N N -9.768 35.986 10.945 -7.167 0.388 2.598 O15 EAD 46 EAD N8 N8 N 0 1 Y N N -14.049 38.595 10.674 -11.485 1.832 0.706 N8 EAD 47 EAD C23 C23 C 0 1 Y N N -13.099 39.527 11.057 -10.982 0.946 -0.131 C23 EAD 48 EAD C24 C24 C 0 1 Y N N -11.769 39.122 11.226 -9.764 0.345 0.119 C24 EAD 49 EAD C25 C25 C 0 1 Y N N -11.410 37.750 10.991 -9.062 0.692 1.281 C25 EAD 50 EAD C26 C26 C 0 1 Y N N -12.435 36.801 10.581 -9.635 1.638 2.140 C26 EAD 51 EAD C27 C27 C 0 1 Y N N -13.780 37.277 10.434 -10.859 2.187 1.810 C27 EAD 52 EAD C28 C28 C 0 1 N N N -14.964 36.400 10.030 -11.487 3.207 2.725 C28 EAD 53 EAD C29 C29 C 0 1 N N N -15.917 37.053 9.011 -11.798 4.479 1.933 C29 EAD 54 EAD HO2 HO2 H 0 1 N N N -0.016 34.516 9.514 1.997 4.278 -1.187 HO2 EAD 55 EAD H11 1H1 H 0 1 N N N -1.374 32.476 13.622 5.875 2.638 -1.366 H11 EAD 56 EAD H12A 2H1 H 0 0 N N N -0.384 33.728 14.674 5.079 3.984 -0.514 H12A EAD 57 EAD H2 H2 H 0 1 N N N 0.538 32.170 15.562 5.183 2.628 1.609 H2 EAD 58 EAD H3 H3 H 0 1 N N N 1.421 31.347 12.715 7.388 3.889 0.170 H3 EAD 59 EAD HO5 HO5 H 0 1 N N N 3.177 32.160 13.447 7.916 4.479 2.424 HO5 EAD 60 EAD H4 H4 H 0 1 N N N 1.446 29.102 13.368 8.769 1.986 0.157 H4 EAD 61 EAD HO6 HO6 H 0 1 N N N 3.391 29.198 13.717 9.690 3.239 2.013 HO6 EAD 62 EAD H5 H5 H 0 1 N N N 0.498 30.240 16.251 7.197 0.852 2.539 H5 EAD 63 EAD H6 H6 H 0 1 N N N -0.993 27.071 14.597 7.352 -0.646 -0.957 H6 EAD 64 EAD HN31 1HN3 H 0 0 N N N 0.517 24.793 19.786 10.398 -4.298 -0.103 HN31 EAD 65 EAD HN32 2HN3 H 0 0 N N N -0.266 24.995 18.199 11.368 -4.794 1.177 HN32 EAD 66 EAD H9 H9 H 0 1 N N N 2.998 28.703 19.617 10.741 -1.730 4.496 H9 EAD 67 EAD HO9 HO9 H 0 1 N N N -0.979 36.558 11.101 -0.880 2.457 -2.556 HO9 EAD 68 EAD H111 1H11 H 0 0 N N N -2.261 36.474 14.207 -1.879 -0.428 -3.401 H111 EAD 69 EAD H112 2H11 H 0 0 N N N -2.085 34.767 14.811 -0.570 -1.518 -3.920 H112 EAD 70 EAD H12 H12 H 0 1 N N N -3.445 35.935 16.290 -0.820 -2.764 -1.742 H12 EAD 71 EAD H1 H1 H 0 1 N N N -4.442 33.570 15.479 -2.659 -2.716 -4.009 H1 EAD 72 EAD H7 H7 H 0 1 N N N -4.636 34.360 17.523 -2.640 -5.046 -3.485 H7 EAD 73 EAD H14 H14 H 0 1 N N N -5.713 34.389 13.644 -4.582 -2.263 -2.733 H14 EAD 74 EAD H13 H13 H 0 1 N N N -7.571 34.037 15.469 -4.765 -4.656 -3.050 H13 EAD 75 EAD H15 H15 H 0 1 N N N -6.623 36.658 15.636 -3.159 -3.350 -0.238 H15 EAD 76 EAD H16 H16 H 0 1 N N N -5.616 36.427 11.891 -4.531 -2.999 1.581 H16 EAD 77 EAD HN71 1HN7 H 0 0 N N N -7.861 38.127 7.891 -8.667 -1.652 2.458 HN71 EAD 78 EAD HN72 2HN7 H 0 0 N N N -8.711 38.396 9.428 -8.381 -2.412 3.929 HN72 EAD 79 EAD H19 H19 H 0 1 N N N -8.568 39.125 11.287 -7.965 -1.485 0.157 H19 EAD 80 EAD H20 H20 H 0 1 N N N -9.847 38.610 13.469 -6.726 0.666 -0.841 H20 EAD 81 EAD H21 H21 H 0 1 N N N -8.318 37.588 15.104 -4.586 -0.130 -1.492 H21 EAD 82 EAD H23 H23 H 0 1 N N N -13.381 40.556 11.224 -11.531 0.686 -1.024 H23 EAD 83 EAD H24 H24 H 0 1 N N N -11.018 39.836 11.531 -9.358 -0.380 -0.571 H24 EAD 84 EAD H26 H26 H 0 1 N N N -12.189 35.766 10.393 -9.128 1.933 3.047 H26 EAD 85 EAD H281 1H28 H 0 0 N N N -15.551 36.218 10.942 -12.410 2.803 3.141 H281 EAD 86 EAD H282 2H28 H 0 0 N N N -14.565 35.480 9.578 -10.796 3.443 3.534 H282 EAD 87 EAD H291 1H29 H 0 0 N N N -16.025 36.395 8.136 -10.875 4.883 1.518 H291 EAD 88 EAD H292 2H29 H 0 0 N N N -15.505 38.022 8.692 -12.489 4.243 1.124 H292 EAD 89 EAD H293 3H29 H 0 0 N N N -16.901 37.209 9.476 -12.252 5.216 2.595 H293 EAD 90 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EAD P1 O1 DOUB N N 1 EAD P1 O2 SING N N 2 EAD P1 O3 SING N N 3 EAD P1 O7 SING N N 4 EAD O2 HO2 SING N N 5 EAD O3 C1 SING N N 6 EAD C1 C2 SING N N 7 EAD C1 H11 SING N N 8 EAD C1 H12A SING N N 9 EAD C2 O4 SING N N 10 EAD C2 C3 SING N N 11 EAD C2 H2 SING N N 12 EAD O4 C5 SING N N 13 EAD C3 O5 SING N N 14 EAD C3 C4 SING N N 15 EAD C3 H3 SING N N 16 EAD O5 HO5 SING N N 17 EAD C4 O6 SING N N 18 EAD C4 C5 SING N N 19 EAD C4 H4 SING N N 20 EAD O6 HO6 SING N N 21 EAD C5 N1 SING N N 22 EAD C5 H5 SING N N 23 EAD N1 C6 SING Y N 24 EAD N1 C10 SING Y N 25 EAD C6 N2 DOUB Y N 26 EAD C6 H6 SING N N 27 EAD N2 C7 SING Y N 28 EAD C7 C8 SING Y N 29 EAD C7 C10 DOUB Y N 30 EAD C8 N3 SING N N 31 EAD C8 N4 DOUB Y N 32 EAD N3 HN31 SING N N 33 EAD N3 HN32 SING N N 34 EAD N4 C9 SING Y N 35 EAD C9 N5 DOUB Y N 36 EAD C9 H9 SING N N 37 EAD N5 C10 SING Y N 38 EAD O7 P2 SING N N 39 EAD P2 O8 DOUB N N 40 EAD P2 O9 SING N N 41 EAD P2 O10 SING N N 42 EAD O9 HO9 SING N N 43 EAD O10 C11 SING N N 44 EAD C11 C12 SING N N 45 EAD C11 H111 SING N N 46 EAD C11 H112 SING N N 47 EAD C12 O11 SING N N 48 EAD C12 C13 SING N N 49 EAD C12 H12 SING N N 50 EAD O11 C15 SING N N 51 EAD C13 O12 SING N N 52 EAD C13 C14 SING N N 53 EAD C13 H1 SING N N 54 EAD O12 H7 SING N N 55 EAD C14 O13 SING N N 56 EAD C14 C15 SING N N 57 EAD C14 H14 SING N N 58 EAD O13 H13 SING N N 59 EAD C15 N6 SING N N 60 EAD C15 H15 SING N N 61 EAD N6 C16 SING N N 62 EAD N6 C21 SING N N 63 EAD C16 C17 DOUB N N 64 EAD C16 H16 SING N N 65 EAD C17 C18 SING N N 66 EAD C17 C19 SING N N 67 EAD C18 O14 DOUB N N 68 EAD C18 N7 SING N N 69 EAD N7 HN71 SING N N 70 EAD N7 HN72 SING N N 71 EAD C19 C20 SING N N 72 EAD C19 C22 SING N N 73 EAD C19 H19 SING N N 74 EAD C20 C21 DOUB N N 75 EAD C20 H20 SING N N 76 EAD C21 H21 SING N N 77 EAD C22 O15 DOUB N N 78 EAD C22 C25 SING N N 79 EAD N8 C23 SING Y N 80 EAD N8 C27 DOUB Y N 81 EAD C23 C24 DOUB Y N 82 EAD C23 H23 SING N N 83 EAD C24 C25 SING Y N 84 EAD C24 H24 SING N N 85 EAD C25 C26 DOUB Y N 86 EAD C26 C27 SING Y N 87 EAD C26 H26 SING N N 88 EAD C27 C28 SING N N 89 EAD C28 C29 SING N N 90 EAD C28 H281 SING N N 91 EAD C28 H282 SING N N 92 EAD C29 H291 SING N N 93 EAD C29 H292 SING N N 94 EAD C29 H293 SING N N 95 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EAD InChI InChI 1.03 "InChI=1S/C29H36N8O15P2/c1-2-14-7-13(3-5-32-14)20(38)15-4-6-36(8-16(15)26(31)43)28-23(41)21(39)17(50-28)9-48-53(44,45)52-54(46,47)49-10-18-22(40)24(42)29(51-18)37-12-35-19-25(30)33-11-34-27(19)37/h3-8,11-12,15,17-18,21-24,28-29,39-42H,2,9-10H2,1H3,(H2,31,43)(H,44,45)(H,46,47)(H2,30,33,34)/t15-,17+,18+,21+,22+,23+,24+,28+,29+/m0/s1" EAD InChIKey InChI 1.03 KVEIKWLOSUPDGF-OYBINNFYSA-N EAD SMILES_CANONICAL CACTVS 3.385 "CCc1cc(ccn1)C(=O)[C@H]2C=CN(C=C2C(N)=O)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)[C@@H](O)[C@H]3O" EAD SMILES CACTVS 3.385 "CCc1cc(ccn1)C(=O)[CH]2C=CN(C=C2C(N)=O)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)[CH](O)[CH]3O" EAD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "CCc1cc(ccn1)C(=O)[C@H]2C=CN(C=C2C(=O)N)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O" EAD SMILES "OpenEye OEToolkits" 1.7.5 "CCc1cc(ccn1)C(=O)C2C=CN(C=C2C(=O)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id EAD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.5.0 _pdbx_chem_comp_identifier.identifier "[[(2R,3S,4R,5R)-5-[(4S)-3-aminocarbonyl-4-(2-ethylpyridin-4-yl)carbonyl-4H-pyridin-1-yl]-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EAD "Create component" 2006-06-14 RCSB EAD "Modify descriptor" 2011-06-04 RCSB EAD "Modify descriptor" 2012-01-05 RCSB EAD "Modify coordinates" 2012-01-05 RCSB EAD "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id EAD _pdbx_chem_comp_synonyms.name "2-ETHYL-ISONICOTINIC-ACYL-NICOTINAMIDE-ADENINE DINUCLEOTIDE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##