data_ED9 # _chem_comp.id ED9 _chem_comp.name "(1R,2R,3R,5Z,7E,14beta,17alpha)-2-(3-hydroxypropoxy)-9,10-secocholesta-5,7,10-triene-1,3,25-triol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H50 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-08-18 _chem_comp.pdbx_modified_date 2014-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 490.715 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ED9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3WGP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ED9 O2 O2 O 0 1 N N N 16.899 17.677 34.260 -6.065 -0.896 -2.831 O2 ED9 1 ED9 O3 O3 O 0 1 N N N 4.381 26.501 34.643 8.992 1.466 -1.295 O3 ED9 2 ED9 C1 C1 C 0 1 N N R 14.098 17.651 35.198 -3.828 1.353 -0.817 C1 ED9 3 ED9 C2 C2 C 0 1 N N R 14.681 16.646 34.179 -5.133 0.836 -1.430 C2 ED9 4 ED9 C3 C3 C 0 1 N N R 15.840 17.307 33.337 -4.881 -0.495 -2.139 C3 ED9 5 ED9 C4 C4 C 0 1 N N N 15.327 18.605 32.578 -4.505 -1.567 -1.111 C4 ED9 6 ED9 C5 C5 C 0 1 N N N 14.546 19.574 33.450 -3.280 -1.094 -0.354 C5 ED9 7 ED9 C6 C6 C 0 1 N N N 14.608 20.870 33.363 -2.225 -1.905 -0.138 C6 ED9 8 ED9 C7 C7 C 0 1 N N N 13.915 21.944 34.132 -1.059 -1.411 0.599 C7 ED9 9 ED9 C8 C8 C 0 1 N N N 13.740 23.158 33.691 -0.016 -2.213 0.812 C8 ED9 10 ED9 C9 C9 C 0 1 N N N 14.192 23.638 32.238 0.024 -3.649 0.310 C9 ED9 11 ED9 C10 C10 C 0 1 N N N 13.572 18.905 34.456 -3.299 0.301 0.138 C10 ED9 12 ED9 C11 C11 C 0 1 N N N 12.928 24.187 31.353 1.325 -3.922 -0.443 C11 ED9 13 ED9 C12 C12 C 0 1 N N N 12.051 25.175 32.261 2.553 -3.441 0.348 C12 ED9 14 ED9 C13 C13 C 0 1 N N R 11.642 24.601 33.748 2.392 -1.958 0.584 C13 ED9 15 ED9 C14 C14 C 0 1 N N S 13.024 24.226 34.476 1.204 -1.763 1.559 C14 ED9 16 ED9 C15 C15 C 0 1 N N N 12.453 23.868 35.998 1.312 -0.266 1.860 C15 ED9 17 ED9 C16 C16 C 0 1 N N N 11.314 24.946 36.161 2.843 -0.060 2.034 C16 ED9 18 ED9 C17 C17 C 0 1 N N R 11.152 25.632 34.763 3.527 -1.207 1.262 C17 ED9 19 ED9 C18 C18 C 0 1 N N N 10.683 23.258 33.467 2.067 -1.268 -0.743 C18 ED9 20 ED9 C19 C19 C 0 1 N N N 12.332 19.332 34.621 -2.870 0.617 1.360 C19 ED9 21 ED9 C20 C20 C 0 1 N N R 9.732 26.193 34.328 4.482 -0.630 0.215 C20 ED9 22 ED9 C21 C21 C 0 1 N N N 9.578 27.623 35.045 5.177 -1.773 -0.527 C21 ED9 23 ED9 C22 C22 C 0 1 N N N 8.505 25.409 34.851 5.532 0.241 0.908 C22 ED9 24 ED9 C23 C23 C 0 1 N N N 7.226 25.757 34.064 6.411 0.917 -0.146 C23 ED9 25 ED9 C24 C24 C 0 1 N N N 6.102 24.877 34.298 7.461 1.788 0.547 C24 ED9 26 ED9 C25 C25 C 0 1 N N N 4.724 25.348 33.923 8.339 2.464 -0.507 C25 ED9 27 ED9 C26 C26 C 0 1 N N N 4.751 25.608 32.436 9.389 3.335 0.186 C26 ED9 28 ED9 C27 C27 C 0 1 N N N 3.640 24.256 34.269 7.469 3.338 -1.412 C27 ED9 29 ED9 O1 O1 O 0 1 N N N 13.100 17.019 36.039 -2.870 1.590 -1.851 O1 ED9 30 ED9 O4 O4 O 0 1 N N N 15.210 15.540 34.916 -6.102 0.649 -0.397 O4 ED9 31 ED9 C28 C28 C 0 1 N N N 15.418 14.327 34.041 -6.906 1.801 -0.138 C28 ED9 32 ED9 C29 C29 C 0 1 N N N 14.096 13.578 34.088 -7.903 1.487 0.980 C29 ED9 33 ED9 C30 C30 C 0 1 N N N 14.283 12.558 35.198 -8.764 2.721 1.257 C30 ED9 34 ED9 O5 O5 O 0 1 N N N 13.021 12.274 35.786 -9.694 2.427 2.301 O5 ED9 35 ED9 H1 H1 H 0 1 N N N 17.208 16.903 34.715 -5.979 -1.735 -3.305 H1 ED9 36 ED9 H2 H2 H 0 1 N N N 4.373 26.304 35.572 9.563 0.874 -0.785 H2 ED9 37 ED9 H3 H3 H 0 1 N N N 14.929 17.981 35.839 -4.018 2.279 -0.274 H3 ED9 38 ED9 H4 H4 H 0 1 N N N 13.885 16.318 33.494 -5.508 1.564 -2.150 H4 ED9 39 ED9 H5 H5 H 0 1 N N N 16.205 16.581 32.596 -4.066 -0.377 -2.853 H5 ED9 40 ED9 H6 H6 H 0 1 N N N 16.202 19.135 32.173 -5.332 -1.716 -0.416 H6 ED9 41 ED9 H7 H7 H 0 1 N N N 14.676 18.285 31.751 -4.281 -2.503 -1.622 H7 ED9 42 ED9 H8 H8 H 0 1 N N N 15.280 21.233 32.599 -2.239 -2.920 -0.508 H8 ED9 43 ED9 H9 H9 H 0 1 N N N 13.535 21.701 35.113 -1.045 -0.396 0.969 H9 ED9 44 ED9 H10 H10 H 0 1 N N N 14.653 22.790 31.711 -0.048 -4.328 1.159 H10 ED9 45 ED9 H11 H11 H 0 1 N N N 14.929 24.447 32.345 -0.820 -3.819 -0.359 H11 ED9 46 ED9 H12 H12 H 0 1 N N N 13.302 24.729 30.472 1.414 -4.993 -0.621 H12 ED9 47 ED9 H13 H13 H 0 1 N N N 12.309 23.338 31.026 1.295 -3.405 -1.402 H13 ED9 48 ED9 H14 H14 H 0 1 N N N 12.625 26.103 32.403 2.606 -3.964 1.303 H14 ED9 49 ED9 H15 H15 H 0 1 N N N 11.121 25.398 31.717 3.460 -3.628 -0.228 H15 ED9 50 ED9 H16 H16 H 0 1 N N N 13.647 25.130 34.546 1.344 -2.357 2.463 H16 ED9 51 ED9 H17 H17 H 0 1 N N N 12.050 22.846 36.047 0.935 0.324 1.025 H17 ED9 52 ED9 H18 H18 H 0 1 N N N 13.236 23.990 36.761 0.782 -0.018 2.780 H18 ED9 53 ED9 H19 H19 H 0 1 N N N 11.600 25.690 36.919 3.141 0.905 1.624 H19 ED9 54 ED9 H20 H20 H 0 1 N N N 10.372 24.462 36.459 3.112 -0.117 3.089 H20 ED9 55 ED9 H21 H21 H 0 1 N N N 11.851 26.481 34.737 4.064 -1.867 1.943 H21 ED9 56 ED9 H22 H22 H 0 1 N N N 10.372 22.821 34.428 1.089 -1.595 -1.093 H22 ED9 57 ED9 H23 H23 H 0 1 N N N 9.792 23.557 32.895 2.058 -0.187 -0.598 H23 ED9 58 ED9 H24 H24 H 0 1 N N N 11.254 22.513 32.894 2.824 -1.528 -1.483 H24 ED9 59 ED9 H25 H25 H 0 1 N N N 11.663 18.804 35.284 -2.498 -0.154 2.018 H25 ED9 60 ED9 H26 H26 H 0 1 N N N 11.988 20.209 34.093 -2.895 1.644 1.692 H26 ED9 61 ED9 H27 H27 H 0 1 N N N 9.686 26.311 33.235 3.920 -0.024 -0.495 H27 ED9 62 ED9 H28 H28 H 0 1 N N N 8.606 28.064 34.779 5.684 -2.417 0.191 H28 ED9 63 ED9 H29 H29 H 0 1 N N N 9.636 27.494 36.136 4.435 -2.354 -1.075 H29 ED9 64 ED9 H30 H30 H 0 1 N N N 10.387 28.290 34.711 5.906 -1.363 -1.225 H30 ED9 65 ED9 H31 H31 H 0 1 N N N 8.349 25.657 35.911 5.034 1.002 1.509 H31 ED9 66 ED9 H32 H32 H 0 1 N N N 8.702 24.331 34.752 6.153 -0.382 1.553 H32 ED9 67 ED9 H33 H33 H 0 1 N N N 7.467 25.724 32.991 6.909 0.156 -0.747 H33 ED9 68 ED9 H34 H34 H 0 1 N N N 6.085 24.653 35.375 6.963 2.549 1.148 H34 ED9 69 ED9 H35 H35 H 0 1 N N N 5.511 26.371 32.210 8.892 4.096 0.786 H35 ED9 70 ED9 H36 H36 H 0 1 N N N 4.998 24.677 31.905 10.010 2.712 0.830 H36 ED9 71 ED9 H37 H37 H 0 1 N N N 3.764 25.966 32.109 10.015 3.816 -0.566 H37 ED9 72 ED9 H38 H38 H 0 1 N N N 3.632 24.077 35.354 6.971 4.100 -0.812 H38 ED9 73 ED9 H39 H39 H 0 1 N N N 2.649 24.609 33.948 8.094 3.820 -2.163 H39 ED9 74 ED9 H40 H40 H 0 1 N N N 3.883 23.320 33.745 6.721 2.718 -1.906 H40 ED9 75 ED9 H41 H41 H 0 1 N N N 12.757 17.655 36.656 -2.017 1.911 -1.530 H41 ED9 76 ED9 H42 H42 H 0 1 N N N 16.232 13.701 34.435 -6.267 2.629 0.167 H42 ED9 77 ED9 H43 H43 H 0 1 N N N 15.655 14.630 33.010 -7.450 2.075 -1.042 H43 ED9 78 ED9 H44 H44 H 0 1 N N N 13.268 14.263 34.323 -8.542 0.659 0.675 H44 ED9 79 ED9 H45 H45 H 0 1 N N N 13.897 13.078 33.129 -7.359 1.213 1.884 H45 ED9 80 ED9 H46 H46 H 0 1 N N N 14.711 11.635 34.781 -8.125 3.549 1.562 H46 ED9 81 ED9 H47 H47 H 0 1 N N N 14.962 12.965 35.962 -9.307 2.995 0.353 H47 ED9 82 ED9 H48 H48 H 0 1 N N N 13.131 11.636 36.481 -10.274 3.166 2.530 H48 ED9 83 ED9 H49 H49 H 0 1 N N N 6.923 26.778 34.341 5.791 1.540 -0.790 H49 ED9 84 ED9 H50 H50 H 0 1 N N N 6.292 23.952 33.734 8.081 1.165 1.191 H50 ED9 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ED9 C11 C9 SING N N 1 ED9 C11 C12 SING N N 2 ED9 C9 C8 SING N N 3 ED9 C12 C13 SING N N 4 ED9 C26 C25 SING N N 5 ED9 C4 C3 SING N N 6 ED9 C4 C5 SING N N 7 ED9 C3 C2 SING N N 8 ED9 C3 O2 SING N N 9 ED9 C6 C5 DOUB N Z 10 ED9 C6 C7 SING N N 11 ED9 C5 C10 SING N N 12 ED9 C18 C13 SING N N 13 ED9 C8 C7 DOUB N E 14 ED9 C8 C14 SING N N 15 ED9 C13 C14 SING N N 16 ED9 C13 C17 SING N N 17 ED9 C25 C27 SING N N 18 ED9 C25 C24 SING N N 19 ED9 C25 O3 SING N N 20 ED9 C28 C29 SING N N 21 ED9 C28 O4 SING N N 22 ED9 C23 C24 SING N N 23 ED9 C23 C22 SING N N 24 ED9 C29 C30 SING N N 25 ED9 C2 O4 SING N N 26 ED9 C2 C1 SING N N 27 ED9 C20 C17 SING N N 28 ED9 C20 C22 SING N N 29 ED9 C20 C21 SING N N 30 ED9 C10 C19 DOUB N N 31 ED9 C10 C1 SING N N 32 ED9 C14 C15 SING N N 33 ED9 C17 C16 SING N N 34 ED9 C30 O5 SING N N 35 ED9 C1 O1 SING N N 36 ED9 C15 C16 SING N N 37 ED9 O2 H1 SING N N 38 ED9 O3 H2 SING N N 39 ED9 C1 H3 SING N N 40 ED9 C2 H4 SING N N 41 ED9 C3 H5 SING N N 42 ED9 C4 H6 SING N N 43 ED9 C4 H7 SING N N 44 ED9 C6 H8 SING N N 45 ED9 C7 H9 SING N N 46 ED9 C9 H10 SING N N 47 ED9 C9 H11 SING N N 48 ED9 C11 H12 SING N N 49 ED9 C11 H13 SING N N 50 ED9 C12 H14 SING N N 51 ED9 C12 H15 SING N N 52 ED9 C14 H16 SING N N 53 ED9 C15 H17 SING N N 54 ED9 C15 H18 SING N N 55 ED9 C16 H19 SING N N 56 ED9 C16 H20 SING N N 57 ED9 C17 H21 SING N N 58 ED9 C18 H22 SING N N 59 ED9 C18 H23 SING N N 60 ED9 C18 H24 SING N N 61 ED9 C19 H25 SING N N 62 ED9 C19 H26 SING N N 63 ED9 C20 H27 SING N N 64 ED9 C21 H28 SING N N 65 ED9 C21 H29 SING N N 66 ED9 C21 H30 SING N N 67 ED9 C22 H31 SING N N 68 ED9 C22 H32 SING N N 69 ED9 C23 H33 SING N N 70 ED9 C24 H34 SING N N 71 ED9 C26 H35 SING N N 72 ED9 C26 H36 SING N N 73 ED9 C26 H37 SING N N 74 ED9 C27 H38 SING N N 75 ED9 C27 H39 SING N N 76 ED9 C27 H40 SING N N 77 ED9 O1 H41 SING N N 78 ED9 C28 H42 SING N N 79 ED9 C28 H43 SING N N 80 ED9 C29 H44 SING N N 81 ED9 C29 H45 SING N N 82 ED9 C30 H46 SING N N 83 ED9 C30 H47 SING N N 84 ED9 O5 H48 SING N N 85 ED9 C23 H49 SING N N 86 ED9 C24 H50 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ED9 SMILES ACDLabs 12.01 "O(CCCO)C3C(O)C(\C(=C/C=C1\CCCC2(C)C(C(C)CCCC(O)(C)C)CCC12)CC3O)=C" ED9 InChI InChI 1.03 "InChI=1S/C30H50O5/c1-20(9-6-15-29(3,4)34)24-13-14-25-22(10-7-16-30(24,25)5)11-12-23-19-26(32)28(27(33)21(23)2)35-18-8-17-31/h11-12,20,24-28,31-34H,2,6-10,13-19H2,1,3-5H3/b22-11+,23-12-/t20-,24-,25+,26-,27-,28-,30-/m1/s1" ED9 InChIKey InChI 1.03 FZEXGDDBXLBRTD-AYIMTCTASA-N ED9 SMILES_CANONICAL CACTVS 3.385 "C[C@H](CCCC(C)(C)O)[C@H]1CC[C@H]2C(\CCC[C@]12C)=C\C=C3\C[C@@H](O)[C@@H](OCCCO)[C@H](O)C3=C" ED9 SMILES CACTVS 3.385 "C[CH](CCCC(C)(C)O)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)[CH](OCCCO)[CH](O)C3=C" ED9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H](CCCC(C)(C)O)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C/3\C[C@H]([C@H]([C@@H](C3=C)O)OCCCO)O)C" ED9 SMILES "OpenEye OEToolkits" 1.7.6 "CC(CCCC(C)(C)O)C1CCC2C1(CCCC2=CC=C3CC(C(C(C3=C)O)OCCCO)O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ED9 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2R,3R,5Z,7E,14beta,17alpha)-2-(3-hydroxypropoxy)-9,10-secocholesta-5,7,10-triene-1,3,25-triol" ED9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1R,2R,3R,5Z)-5-[(2E)-2-[(1R,3aS,7aR)-7a-methyl-1-[(2R)-6-methyl-6-oxidanyl-heptan-2-yl]-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-2-(3-oxidanylpropoxy)cyclohexane-1,3-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ED9 "Create component" 2014-08-18 PDBJ ED9 "Initial release" 2014-08-27 RCSB #