data_EEF # _chem_comp.id EEF _chem_comp.name "N-(3-biphenyl-4-ylpropanoyl)-L-alpha-glutamyl-L-alpha-glutamyl-amide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H29 N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-08-13 _chem_comp.pdbx_modified_date 2015-04-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 483.514 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EEF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3LJG _chem_comp.pdbx_subcomponent_list "0YF GLU GLU NH2" _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EEF C1 C1 C 0 1 N N N 7.942 25.043 3.433 1.676 0.058 0.221 C1 0YF 1 EEF C2 C2 C 0 1 N N N 8.729 26.139 4.180 0.260 0.383 0.622 C2 0YF 2 EEF O2 O2 O 0 1 N N N 9.818 25.897 4.639 0.035 0.869 1.710 O2 0YF 3 EEF C14 C14 C 0 1 N N N 7.782 23.761 4.261 2.628 0.435 1.358 C14 0YF 4 EEF C15 C15 C 0 1 Y N N 6.337 22.560 5.930 4.811 1.060 0.308 C15 0YF 5 EEF C16 C16 C 0 1 Y N N 5.075 22.253 6.575 6.109 0.767 -0.062 C16 0YF 6 EEF C17 C17 C 0 1 Y N N 3.894 23.005 6.167 6.642 -0.490 0.215 C17 0YF 7 EEF C18 C18 C 0 1 Y N N 6.419 23.530 4.952 4.043 0.110 0.957 C18 0YF 8 EEF C19 C19 C 0 1 Y N N 2.564 22.682 6.846 8.037 -0.810 -0.179 C19 0YF 9 EEF C20 C20 C 0 1 Y N N 2.569 22.244 8.272 8.571 -2.067 0.098 C20 0YF 10 EEF C21 C21 C 0 1 Y N N 1.378 21.931 8.908 9.868 -2.359 -0.271 C21 0YF 11 EEF C22 C22 C 0 1 Y N N 0.182 22.462 6.824 10.111 -0.160 -1.197 C22 0YF 12 EEF C23 C23 C 0 1 Y N N 1.421 22.786 6.160 8.815 0.143 -0.833 C23 0YF 13 EEF C27 C27 C 0 1 Y N N 0.170 22.030 8.186 10.638 -1.408 -0.915 C27 0YF 14 EEF C30 C30 C 0 1 Y N N 3.964 24.016 5.159 5.863 -1.444 0.865 C30 0YF 15 EEF C31 C31 C 0 1 Y N N 5.197 24.312 4.529 4.570 -1.137 1.240 C31 0YF 16 EEF N1 N1 N 0 1 N N N 8.055 27.419 4.365 -0.755 0.134 -0.229 N GLU 17 EEF C3 C3 C 0 1 N N S 8.721 28.473 5.146 -2.131 0.450 0.161 CA GLU 18 EEF C9 C9 C 0 1 N N N 8.029 28.575 6.502 -3.086 -0.427 -0.608 C GLU 19 EEF O1 O1 O 0 1 N N N 6.845 28.412 6.576 -2.658 -1.237 -1.404 O GLU 20 EEF C4 C4 C 0 1 N N N 8.628 29.844 4.442 -2.425 1.919 -0.151 CB GLU 21 EEF C5 C5 C 0 1 N N N 9.440 30.059 3.168 -1.541 2.812 0.723 CG GLU 22 EEF C8 C8 C 0 1 N N N 9.168 31.368 2.432 -1.831 4.259 0.416 CD GLU 23 EEF O7 O7 O 0 1 N N N 8.366 31.406 1.566 -2.658 4.546 -0.416 OE1 GLU 24 EEF O6 O6 O 0 1 N N N 10.157 32.348 2.446 -1.169 5.228 1.067 OE2 GLU 25 EEF N2 N2 N 0 1 N N N 8.760 29.175 7.597 -4.414 -0.312 -0.412 N GLU 26 EEF C10 C10 C 0 1 N N S 8.018 29.430 8.814 -5.341 -1.164 -1.160 CA GLU 27 EEF C13 C13 C 0 1 N N N 6.946 30.478 8.579 -5.631 -0.538 -2.500 C GLU 28 EEF O5 O5 O 0 1 N N N 7.158 31.413 7.879 -5.113 0.517 -2.800 O GLU 29 EEF C11 C11 C 0 1 N N N 8.872 29.771 10.040 -6.646 -1.312 -0.374 CB GLU 30 EEF C12 C12 C 0 1 N N N 8.742 28.835 11.263 -6.372 -2.060 0.933 CG GLU 31 EEF C32 C32 C 0 1 N N N 7.519 28.934 12.193 -7.656 -2.205 1.707 CD GLU 32 EEF O34 O34 O 0 1 N N N 6.799 29.872 12.125 -8.685 -1.756 1.260 OE1 GLU 33 EEF O33 O33 O 0 1 N N N 7.407 28.067 13.302 -7.657 -2.833 2.894 OE2 GLU 34 EEF N3 N3 N 0 1 N N N 5.697 30.308 9.292 -6.465 -1.150 -3.364 N NH2 35 EEF H1 H1 H 0 1 N N N 6.942 25.432 3.189 1.760 -1.010 0.017 H1 0YF 36 EEF H2 H2 H 0 1 N N N 8.477 24.797 2.504 1.939 0.621 -0.675 H2 0YF 37 EEF H16 H16 H 0 1 N N N 7.960 22.909 3.589 2.544 1.503 1.562 H16 0YF 38 EEF H17 H17 H 0 1 N N N 8.552 23.776 5.046 2.365 -0.128 2.253 H17 0YF 39 EEF H18 H18 H 0 1 N N N 7.227 22.021 6.220 4.397 2.034 0.094 H18 0YF 40 EEF H19 H19 H 0 1 N N N 5.012 21.489 7.336 6.709 1.511 -0.565 H19 0YF 41 EEF H20 H20 H 0 1 N N N 3.503 22.171 8.810 7.970 -2.811 0.601 H20 0YF 42 EEF H21 H21 H 0 1 N N N 1.375 21.616 9.941 10.283 -3.333 -0.056 H21 0YF 43 EEF H22 H22 H 0 1 N N N -0.750 22.547 6.284 10.717 0.579 -1.700 H22 0YF 44 EEF H23 H23 H 0 1 N N N 1.425 23.106 5.129 8.404 1.117 -1.054 H23 0YF 45 EEF H24 H24 H 0 1 N N N -0.766 21.779 8.664 11.653 -1.640 -1.201 H24 0YF 46 EEF H25 H25 H 0 1 N N N 3.073 24.556 4.877 6.272 -2.420 1.082 H25 0YF 47 EEF H26 H26 H 0 1 N N N 5.262 25.075 3.768 3.967 -1.875 1.748 H26 0YF 48 EEF H3 H3 H 0 1 N N N 7.152 27.578 3.966 -0.575 -0.255 -1.099 H GLU 49 EEF H5 H5 H 0 1 N N N 9.780 28.218 5.297 -2.256 0.273 1.229 HA GLU 50 EEF H8 H8 H 0 1 N N N 8.952 30.605 5.167 -2.214 2.116 -1.202 HB2 GLU 51 EEF H9 H9 H 0 1 N N N 9.218 29.230 2.480 -1.752 2.614 1.774 HG2 GLU 52 EEF H10 H10 H 0 1 N N N 10.030 32.937 1.711 -1.388 6.141 0.836 HE2 GLU 53 EEF H4 H4 H 0 1 N N N 9.730 29.403 7.517 -4.756 0.336 0.224 H GLU 54 EEF H11 H11 H 0 1 N N N 7.486 28.500 9.065 -4.893 -2.147 -1.308 HA GLU 55 EEF H12 H12 H 0 1 N N N 9.926 29.762 9.724 -7.048 -0.324 -0.149 HB2 GLU 56 EEF H13 H13 H 0 1 N N N 8.596 30.785 10.366 -7.367 -1.872 -0.969 HB3 GLU 57 EEF H14 H14 H 0 1 N N N 8.762 27.805 10.876 -5.969 -3.048 0.708 HG2 GLU 58 EEF H15 H15 H 0 1 N N N 9.630 29.009 11.889 -5.650 -1.500 1.528 HG3 GLU 59 EEF H27 H27 H 0 1 N N N 6.721 28.379 13.880 -8.505 -2.901 3.353 HE2 GLU 60 EEF H6 H6 H 0 1 N N N 4.974 30.993 9.204 -6.878 -1.993 -3.123 HN1 NH2 61 EEF H7 H7 H 0 1 N N N 5.558 29.506 9.872 -6.651 -0.747 -4.226 HN2 NH2 62 EEF H28 H28 H 0 1 N N N 7.571 30.008 4.186 -3.474 2.132 0.056 H28 EEF 63 EEF H29 H29 H 0 1 N N N 10.506 30.036 3.437 -0.493 2.599 0.516 H29 EEF 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EEF O7 C8 DOUB N N 1 EEF C8 O6 SING N N 2 EEF C8 C5 SING N N 3 EEF C5 C4 SING N N 4 EEF C1 C2 SING N N 5 EEF C1 C14 SING N N 6 EEF C2 N1 SING N N 7 EEF C2 O2 DOUB N N 8 EEF C14 C18 SING N N 9 EEF N1 C3 SING N N 10 EEF C4 C3 SING N N 11 EEF C31 C18 DOUB Y N 12 EEF C31 C30 SING Y N 13 EEF C18 C15 SING Y N 14 EEF C3 C9 SING N N 15 EEF C30 C17 DOUB Y N 16 EEF C15 C16 DOUB Y N 17 EEF C23 C22 DOUB Y N 18 EEF C23 C19 SING Y N 19 EEF C17 C16 SING Y N 20 EEF C17 C19 SING N N 21 EEF C9 O1 DOUB N N 22 EEF C9 N2 SING N N 23 EEF C22 C27 SING Y N 24 EEF C19 C20 DOUB Y N 25 EEF N2 C10 SING N N 26 EEF O5 C13 DOUB N N 27 EEF C27 C21 DOUB Y N 28 EEF C20 C21 SING Y N 29 EEF C13 C10 SING N N 30 EEF C13 N3 SING N N 31 EEF C10 C11 SING N N 32 EEF C11 C12 SING N N 33 EEF C12 C32 SING N N 34 EEF O34 C32 DOUB N N 35 EEF C32 O33 SING N N 36 EEF C1 H1 SING N N 37 EEF C1 H2 SING N N 38 EEF N1 H3 SING N N 39 EEF N2 H4 SING N N 40 EEF C3 H5 SING N N 41 EEF N3 H6 SING N N 42 EEF N3 H7 SING N N 43 EEF C4 H8 SING N N 44 EEF C5 H9 SING N N 45 EEF O6 H10 SING N N 46 EEF C10 H11 SING N N 47 EEF C11 H12 SING N N 48 EEF C11 H13 SING N N 49 EEF C12 H14 SING N N 50 EEF C12 H15 SING N N 51 EEF C14 H16 SING N N 52 EEF C14 H17 SING N N 53 EEF C15 H18 SING N N 54 EEF C16 H19 SING N N 55 EEF C20 H20 SING N N 56 EEF C21 H21 SING N N 57 EEF C22 H22 SING N N 58 EEF C23 H23 SING N N 59 EEF C27 H24 SING N N 60 EEF C30 H25 SING N N 61 EEF C31 H26 SING N N 62 EEF O33 H27 SING N N 63 EEF C4 H28 SING N N 64 EEF C5 H29 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EEF SMILES ACDLabs 12.01 "C(C(NC(CCC(O)=O)C(=O)NC(CCC(O)=O)C(N)=O)=O)Cc2ccc(c1ccccc1)cc2" EEF InChI InChI 1.03 "InChI=1S/C25H29N3O7/c26-24(34)19(11-14-22(30)31)28-25(35)20(12-15-23(32)33)27-21(29)13-8-16-6-9-18(10-7-16)17-4-2-1-3-5-17/h1-7,9-10,19-20H,8,11-15H2,(H2,26,34)(H,27,29)(H,28,35)(H,30,31)(H,32,33)/t19-,20-/m0/s1" EEF InChIKey InChI 1.03 KGICPKKIUBLFER-PMACEKPBSA-N EEF SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@H](CCC(O)=O)NC(=O)[C@H](CCC(O)=O)NC(=O)CCc1ccc(cc1)c2ccccc2" EEF SMILES CACTVS 3.385 "NC(=O)[CH](CCC(O)=O)NC(=O)[CH](CCC(O)=O)NC(=O)CCc1ccc(cc1)c2ccccc2" EEF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)c2ccc(cc2)CCC(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CCC(=O)O)C(=O)N" EEF SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)c2ccc(cc2)CCC(=O)NC(CCC(=O)O)C(=O)NC(CCC(=O)O)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier EEF "SYSTEMATIC NAME" ACDLabs 12.01 "N-[3-(biphenyl-4-yl)propanoyl]-L-alpha-glutamyl-L-alpha-glutamine" EEF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(4S)-5-azanyl-5-oxidanylidene-4-[[(2S)-5-oxidanyl-5-oxidanylidene-2-[3-(4-phenylphenyl)propanoylamino]pentanoyl]amino]pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EEF "Create component" 2010-08-13 RCSB EEF "Modify aromatic_flag" 2011-06-04 RCSB EEF "Modify descriptor" 2011-06-04 RCSB EEF "Modify subcomponent list" 2015-04-02 RCSB #