data_EF2 # _chem_comp.id EF2 _chem_comp.name S-Thalidomide _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H10 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-12-05 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 258.229 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EF2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4CI1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EF2 O01 O01 O 0 1 N N N -1.923 7.695 11.553 1.309 0.163 2.052 O01 EF2 1 EF2 C02 C02 C 0 1 N N N -1.715 8.198 12.649 1.926 -0.036 1.028 C02 EF2 2 EF2 N03 N03 N 0 1 N N N -1.294 9.480 12.795 3.203 0.365 0.941 N03 EF2 3 EF2 C04 C04 C 0 1 N N N -1.071 10.098 13.979 3.943 0.187 -0.164 C04 EF2 4 EF2 O05 O05 O 0 1 N N N -0.693 11.248 14.006 5.089 0.582 -0.182 O05 EF2 5 EF2 C06 C06 C 0 1 N N N -1.306 9.377 15.284 3.376 -0.493 -1.382 C06 EF2 6 EF2 C07 C07 C 0 1 N N N -1.111 7.854 15.077 1.865 -0.249 -1.438 C07 EF2 7 EF2 C08 C08 C 0 1 N N S -2.001 7.399 13.899 1.246 -0.734 -0.119 C08 EF2 8 EF2 N09 N09 N 0 1 N N N -1.896 5.966 13.669 -0.185 -0.419 -0.106 N09 EF2 9 EF2 C11 C11 C 0 1 Y N N -1.160 1.494 12.472 -4.509 1.240 -0.128 C11 EF2 10 EF2 C12 C12 C 0 1 Y N N -0.521 2.751 12.388 -3.192 1.666 -0.207 C12 EF2 11 EF2 C13 C13 C 0 1 Y N N -1.227 3.848 12.907 -2.166 0.737 -0.152 C13 EF2 12 EF2 C14 C14 C 0 1 Y N N -2.505 3.704 13.476 -2.467 -0.634 -0.015 C14 EF2 13 EF2 O16 O16 O 0 1 N N N 0.186 5.793 12.604 -0.044 1.846 -0.316 O16 EF2 14 EF2 O18 O18 O 0 1 N N N -3.993 5.348 14.401 -1.006 -2.532 0.121 O18 EF2 15 EF2 C19 C19 C 0 1 Y N N -3.147 2.454 13.535 -3.787 -1.044 0.063 C19 EF2 16 EF2 C20 C20 C 0 1 Y N N -2.454 1.343 13.013 -4.804 -0.104 0.006 C20 EF2 17 EF2 C3 C3 C 0 1 N N N -2.900 5.091 13.926 -1.165 -1.333 0.012 C3 EF2 18 EF2 C4 C4 C 0 1 N N N -0.868 5.316 13.043 -0.691 0.824 -0.204 C4 EF2 19 EF2 H03 H03 H 0 1 N N N -1.136 10.010 11.962 3.608 0.800 1.707 H03 EF2 20 EF2 H08 H08 H 0 1 N N N -3.040 7.615 14.188 1.383 -1.811 -0.023 H08 EF2 21 EF2 H061 H061 H 0 0 N N N -0.590 9.739 16.037 3.845 -0.085 -2.278 H061 EF2 22 EF2 H062 H062 H 0 0 N N N -2.332 9.571 15.630 3.571 -1.564 -1.324 H062 EF2 23 EF2 H071 H071 H 0 0 N N N -0.056 7.643 14.847 1.670 0.815 -1.567 H071 EF2 24 EF2 H072 H072 H 0 0 N N N -1.402 7.315 15.991 1.434 -0.807 -2.270 H072 EF2 25 EF2 H11 H11 H 0 1 N N N -0.640 0.619 12.110 -5.310 1.963 -0.172 H11 EF2 26 EF2 H12 H12 H 0 1 N N N 0.459 2.862 11.948 -2.967 2.717 -0.313 H12 EF2 27 EF2 H20 H20 H 0 1 N N N -2.918 0.368 13.027 -5.834 -0.423 0.066 H20 EF2 28 EF2 H19 H19 H 0 1 N N N -4.133 2.349 13.964 -4.024 -2.093 0.167 H19 EF2 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EF2 O01 C02 DOUB N N 1 EF2 C02 N03 SING N N 2 EF2 C02 C08 SING N N 3 EF2 N03 C04 SING N N 4 EF2 C04 O05 DOUB N N 5 EF2 C04 C06 SING N N 6 EF2 C06 C07 SING N N 7 EF2 C07 C08 SING N N 8 EF2 C08 N09 SING N N 9 EF2 N09 C3 SING N N 10 EF2 N09 C4 SING N N 11 EF2 C11 C12 SING Y N 12 EF2 C11 C20 DOUB Y N 13 EF2 C12 C13 DOUB Y N 14 EF2 C13 C14 SING Y N 15 EF2 C13 C4 SING N N 16 EF2 C14 C19 DOUB Y N 17 EF2 C14 C3 SING N N 18 EF2 O16 C4 DOUB N N 19 EF2 O18 C3 DOUB N N 20 EF2 C19 C20 SING Y N 21 EF2 N03 H03 SING N N 22 EF2 C08 H08 SING N N 23 EF2 C06 H061 SING N N 24 EF2 C06 H062 SING N N 25 EF2 C07 H071 SING N N 26 EF2 C07 H072 SING N N 27 EF2 C11 H11 SING N N 28 EF2 C12 H12 SING N N 29 EF2 C20 H20 SING N N 30 EF2 C19 H19 SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EF2 SMILES ACDLabs 12.01 "O=C1NC(=O)CCC1N3C(=O)c2ccccc2C3=O" EF2 InChI InChI 1.03 "InChI=1S/C13H10N2O4/c16-10-6-5-9(11(17)14-10)15-12(18)7-3-1-2-4-8(7)13(15)19/h1-4,9H,5-6H2,(H,14,16,17)/t9-/m0/s1" EF2 InChIKey InChI 1.03 UEJJHQNACJXSKW-VIFPVBQESA-N EF2 SMILES_CANONICAL CACTVS 3.385 "O=C1CC[C@H](N2C(=O)c3ccccc3C2=O)C(=O)N1" EF2 SMILES CACTVS 3.385 "O=C1CC[CH](N2C(=O)c3ccccc3C2=O)C(=O)N1" EF2 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc2c(c1)C(=O)N(C2=O)[C@H]3CCC(=O)NC3=O" EF2 SMILES "OpenEye OEToolkits" 1.9.2 "c1ccc2c(c1)C(=O)N(C2=O)C3CCC(=O)NC3=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier EF2 "SYSTEMATIC NAME" ACDLabs 12.01 "2-[(3S)-2,6-dioxopiperidin-3-yl]-1H-isoindole-1,3(2H)-dione" EF2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-[(3S)-2,6-bis(oxidanylidene)piperidin-3-yl]isoindole-1,3-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EF2 "Create component" 2013-12-05 EBI EF2 "Initial release" 2014-07-16 RCSB EF2 "Modify descriptor" 2014-09-05 RCSB #