data_EMZ # _chem_comp.id EMZ _chem_comp.name 6-O-methyl-beta-D-galactopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H14 O6" _chem_comp.mon_nstd_parent_comp_id GAL _chem_comp.pdbx_synonyms "6-O-Methyl-D-galactopyranose; 6-O-methyl-beta-D-galactose; 6-O-methyl-D-galactose; 6-O-methyl-galactose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-04-02 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 194.182 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EMZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6G5Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 EMZ 6-O-Methyl-D-galactopyranose PDB ? 2 EMZ 6-O-methyl-beta-D-galactose PDB ? 3 EMZ 6-O-methyl-D-galactose PDB ? 4 EMZ 6-O-methyl-galactose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EMZ C4 C4 C 0 1 N N R 18.469 51.985 139.168 -0.084 1.371 -0.154 C4 EMZ 1 EMZ C5 C5 C 0 1 N N R 19.393 51.344 138.098 0.886 0.231 -0.473 C5 EMZ 2 EMZ C6 C6 C 0 1 N N N 19.025 49.899 137.808 2.291 0.609 0.000 C6 EMZ 3 EMZ C3 C3 C 0 1 N N S 18.770 53.474 139.254 -1.498 0.961 -0.577 C3 EMZ 4 EMZ CAM CAM C 0 1 N N N 20.059 48.001 137.056 4.566 -0.145 -0.005 CAM EMZ 5 EMZ O6 O6 O 0 1 N N N 19.929 49.400 136.820 3.217 -0.403 -0.400 O6 EMZ 6 EMZ O5 O5 O 0 1 N N N 19.276 52.003 136.809 0.461 -0.957 0.198 O5 EMZ 7 EMZ C1 C1 C 0 1 N N R 19.778 53.295 137.045 -0.836 -1.414 -0.192 C1 EMZ 8 EMZ O1 O1 O 0 1 N Y N 20.054 53.939 135.821 -1.150 -2.615 0.516 O1 EMZ 9 EMZ C2 C2 C 0 1 N N R 18.643 53.975 137.827 -1.875 -0.340 0.138 C2 EMZ 10 EMZ O2 O2 O 0 1 N N N 18.657 55.380 137.768 -3.164 -0.771 -0.304 O2 EMZ 11 EMZ O3 O3 O 0 1 N N N 17.838 54.189 140.081 -2.422 1.990 -0.216 O3 EMZ 12 EMZ O4 O4 O 0 1 N N N 17.096 51.792 138.781 -0.064 1.639 1.249 O4 EMZ 13 EMZ H4 H1 H 0 1 N N N 18.667 51.514 140.142 0.214 2.266 -0.700 H4 EMZ 14 EMZ H5 H2 H 0 1 N N N 20.433 51.389 138.454 0.900 0.056 -1.549 H5 EMZ 15 EMZ H61 H3 H 0 1 N N N 17.993 49.846 137.430 2.580 1.562 -0.443 H61 EMZ 16 EMZ H62 H4 H 0 1 N N N 19.110 49.301 138.727 2.297 0.697 1.087 H62 EMZ 17 EMZ H3 H5 H 0 1 N N N 19.801 53.622 139.608 -1.526 0.808 -1.656 H3 EMZ 18 EMZ H6 H6 H 0 1 N N N 20.749 47.567 136.317 5.206 -0.959 -0.347 H6 EMZ 19 EMZ H7 H7 H 0 1 N N N 20.455 47.835 138.069 4.902 0.792 -0.449 H7 EMZ 20 EMZ H8 H8 H 0 1 N N N 19.074 47.521 136.964 4.619 -0.073 1.081 H8 EMZ 21 EMZ H1 H9 H 0 1 N N N 20.677 53.257 137.678 -0.844 -1.611 -1.264 H1 EMZ 22 EMZ HO1 H10 H 0 1 N Y N 20.392 54.810 135.990 -0.531 -3.341 0.354 HO1 EMZ 23 EMZ H2 H11 H 0 1 N N N 17.690 53.603 137.422 -1.896 -0.172 1.215 H2 EMZ 24 EMZ HO2 H12 H 0 1 N Y N 17.930 55.726 138.272 -3.465 -1.594 0.105 HO2 EMZ 25 EMZ HO3 H13 H 0 1 N Y N 17.909 53.883 140.977 -3.339 1.796 -0.454 HO3 EMZ 26 EMZ HO4 H14 H 0 1 N Y N 16.525 52.182 139.432 -0.660 2.349 1.523 HO4 EMZ 27 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EMZ O1 C1 SING N N 1 EMZ O5 C1 SING N N 2 EMZ O5 C5 SING N N 3 EMZ O6 CAM SING N N 4 EMZ O6 C6 SING N N 5 EMZ C1 C2 SING N N 6 EMZ O2 C2 SING N N 7 EMZ C6 C5 SING N N 8 EMZ C2 C3 SING N N 9 EMZ C5 C4 SING N N 10 EMZ O4 C4 SING N N 11 EMZ C4 C3 SING N N 12 EMZ C3 O3 SING N N 13 EMZ C4 H4 SING N N 14 EMZ C5 H5 SING N N 15 EMZ C6 H61 SING N N 16 EMZ C6 H62 SING N N 17 EMZ C3 H3 SING N N 18 EMZ CAM H6 SING N N 19 EMZ CAM H7 SING N N 20 EMZ CAM H8 SING N N 21 EMZ C1 H1 SING N N 22 EMZ O1 HO1 SING N N 23 EMZ C2 H2 SING N N 24 EMZ O2 HO2 SING N N 25 EMZ O3 HO3 SING N N 26 EMZ O4 HO4 SING N N 27 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EMZ InChI InChI 1.03 "InChI=1S/C7H14O6/c1-12-2-3-4(8)5(9)6(10)7(11)13-3/h3-11H,2H2,1H3/t3-,4+,5+,6-,7-/m1/s1" EMZ InChIKey InChI 1.03 QWJKEQVWXSYDJA-VOQCIKJUSA-N EMZ SMILES_CANONICAL CACTVS 3.385 "COC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O" EMZ SMILES CACTVS 3.385 "COC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O" EMZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "COC[C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O" EMZ SMILES "OpenEye OEToolkits" 2.0.6 "COCC1C(C(C(C(O1)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier EMZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(methoxymethyl)oxane-2,3,4,5-tetrol" EMZ "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DGalp[6Me]b EMZ "COMMON NAME" GMML 1.0 6-methyl-b-D-galactopyranose # _pdbx_chem_comp_related.comp_id EMZ _pdbx_chem_comp_related.related_comp_id GAL _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 EMZ C1 GAL C1 "Carbohydrate core" 2 EMZ C2 GAL C2 "Carbohydrate core" 3 EMZ C3 GAL C3 "Carbohydrate core" 4 EMZ C4 GAL C4 "Carbohydrate core" 5 EMZ C5 GAL C5 "Carbohydrate core" 6 EMZ C6 GAL C6 "Carbohydrate core" 7 EMZ O1 GAL O1 "Carbohydrate core" 8 EMZ O2 GAL O2 "Carbohydrate core" 9 EMZ O3 GAL O3 "Carbohydrate core" 10 EMZ O4 GAL O4 "Carbohydrate core" 11 EMZ O5 GAL O5 "Carbohydrate core" 12 EMZ O6 GAL O6 "Carbohydrate core" 13 EMZ H4 GAL H4 "Carbohydrate core" 14 EMZ HO1 GAL HO1 "Carbohydrate core" 15 EMZ H2 GAL H2 "Carbohydrate core" 16 EMZ HO2 GAL HO2 "Carbohydrate core" 17 EMZ HO3 GAL HO3 "Carbohydrate core" 18 EMZ HO4 GAL HO4 "Carbohydrate core" 19 EMZ H5 GAL H5 "Carbohydrate core" 20 EMZ H61 GAL H61 "Carbohydrate core" 21 EMZ H62 GAL H62 "Carbohydrate core" 22 EMZ H3 GAL H3 "Carbohydrate core" 23 EMZ H1 GAL H1 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support EMZ "CARBOHYDRATE ISOMER" D PDB ? EMZ "CARBOHYDRATE RING" pyranose PDB ? EMZ "CARBOHYDRATE ANOMER" beta PDB ? EMZ "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EMZ "Create component" 2018-04-02 EBI EMZ "Initial release" 2018-11-21 RCSB EMZ "Other modification" 2020-07-03 RCSB EMZ "Modify parent residue" 2020-07-17 RCSB EMZ "Modify name" 2020-07-17 RCSB EMZ "Modify synonyms" 2020-07-17 RCSB EMZ "Modify internal type" 2020-07-17 RCSB EMZ "Modify linking type" 2020-07-17 RCSB EMZ "Modify atom id" 2020-07-17 RCSB EMZ "Modify component atom id" 2020-07-17 RCSB EMZ "Modify leaving atom flag" 2020-07-17 RCSB ##