data_EVP # _chem_comp.id EVP _chem_comp.name ;(5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol -5-yl 4,6-O-[(1R)-ethylidene]-beta-D-glucopyranoside ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAD _chem_comp.formula "C29 H32 O13" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Etoposide; VP-16" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-03-23 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 588.557 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EVP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3QX3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EVP C1 C1 C 0 1 N N N 28.145 98.293 33.805 0.702 -5.607 -0.099 C1 EVP 1 EVP O1 O1 O 0 1 N N N 29.166 99.168 34.174 -0.430 -4.719 -0.168 O1 EVP 2 EVP C2 C2 C 0 1 Y N N 27.246 100.243 33.995 1.312 -3.617 0.710 C2 EVP 3 EVP O2 O2 O 0 1 N N N 27.173 99.113 33.249 1.599 -4.947 0.814 O2 EVP 4 EVP C3 C3 C 0 1 Y N N 26.236 101.341 34.250 2.018 -2.490 1.090 C3 EVP 5 EVP O3 O3 O 0 1 N N N 26.065 106.546 37.764 1.372 3.411 0.852 O3 EVP 6 EVP C4 C4 C 0 1 Y N N 26.620 102.450 35.153 1.498 -1.222 0.866 C4 EVP 7 EVP O4 O4 O 0 1 N N N 24.353 106.420 36.119 3.058 2.730 2.231 O4 EVP 8 EVP C5 C5 C 0 1 N N R 25.582 103.621 35.441 2.329 -0.039 1.323 C5 EVP 9 EVP O5 O5 O 0 1 N N N 23.486 100.155 38.656 4.031 -0.048 -3.251 O5 EVP 10 EVP C6 C6 C 0 1 N N R 26.168 104.804 36.127 1.413 1.165 1.409 C6 EVP 11 EVP O6 O6 O 0 1 N N N 20.897 101.497 38.465 6.449 0.955 -2.399 O6 EVP 12 EVP C7 C7 C 0 1 N N N 25.373 106.003 36.609 2.072 2.503 1.571 C7 EVP 13 EVP O7 O7 O 0 1 N N N 20.628 103.840 36.819 6.850 1.473 0.275 O7 EVP 14 EVP C8 C8 C 0 1 N N N 27.159 105.641 38.106 0.273 2.764 0.123 C8 EVP 15 EVP O8 O8 O 0 1 N N N 29.135 104.642 36.076 -1.343 0.572 0.948 O8 EVP 16 EVP C9 C9 C 0 1 N N R 27.056 104.434 37.218 0.749 1.308 0.002 C9 EVP 17 EVP O9 O9 O 0 1 N N N 30.414 105.267 37.681 -3.109 0.876 -0.546 O9 EVP 18 EVP C10 C10 C 0 1 N N S 28.265 103.677 36.692 -0.355 0.268 -0.038 C10 EVP 19 EVP O10 O10 O 0 1 N N N 32.792 106.665 39.927 -6.182 0.938 -2.548 O10 EVP 20 EVP C11 C11 C 0 1 Y N N 27.906 102.490 35.775 0.269 -1.083 0.258 C11 EVP 21 EVP O11 O11 O 0 1 N N N 33.909 106.464 37.857 -6.729 0.489 -0.313 O11 EVP 22 EVP C12 C12 C 0 1 Y N N 28.881 101.414 35.517 -0.448 -2.211 -0.117 C12 EVP 23 EVP O12 O12 O 0 1 N N N 33.190 106.150 35.000 -5.930 0.349 2.453 O12 EVP 24 EVP C13 C13 C 0 1 Y N N 28.491 100.274 34.580 0.065 -3.476 0.104 C13 EVP 25 EVP O13 O13 O 0 1 N N N 31.331 104.246 34.492 -3.196 -0.402 2.892 O13 EVP 26 EVP C14 C14 C 0 1 Y N N 24.384 103.050 36.235 3.430 0.227 0.329 C14 EVP 27 EVP C15 C15 C 0 1 Y N N 24.540 101.820 37.095 3.224 -0.033 -1.013 C15 EVP 28 EVP C16 C16 C 0 1 Y N N 23.349 101.276 37.864 4.234 0.209 -1.931 C16 EVP 29 EVP C17 C17 C 0 1 Y N N 22.012 101.970 37.763 5.455 0.716 -1.501 C17 EVP 30 EVP C18 C18 C 0 1 Y N N 21.871 103.190 36.905 5.657 0.977 -0.151 C18 EVP 31 EVP C19 C19 C 0 1 Y N N 23.048 103.728 36.136 4.640 0.736 0.760 C19 EVP 32 EVP C20 C20 C 0 1 N N N 24.674 99.435 38.598 2.753 -0.568 -3.622 C20 EVP 33 EVP C21 C21 C 0 1 N N N 20.586 105.121 36.246 6.988 1.717 1.676 C21 EVP 34 EVP C22 C22 C 0 1 N N R 30.608 104.572 36.550 -2.662 0.147 0.601 C22 EVP 35 EVP C23 C23 C 0 1 N N R 31.704 105.596 38.201 -4.417 0.506 -0.977 C23 EVP 36 EVP C24 C24 C 0 1 N N N 31.554 106.378 39.332 -4.826 1.278 -2.232 C24 EVP 37 EVP C25 C25 C 0 1 N N R 33.768 107.232 39.025 -7.115 1.196 -1.497 C25 EVP 38 EVP C26 C26 C 0 1 N N S 32.699 106.294 37.254 -5.418 0.830 0.139 C26 EVP 39 EVP C27 C27 C 0 1 N N R 32.554 105.438 35.989 -5.038 0.027 1.384 C27 EVP 40 EVP C28 C28 C 0 1 N N R 31.162 105.156 35.613 -3.603 0.398 1.780 C28 EVP 41 EVP C29 C29 C 0 1 N N N 35.087 107.433 39.710 -8.508 0.735 -1.931 C29 EVP 42 EVP H1 H1 H 0 1 N N N 28.502 97.549 33.077 0.402 -6.579 0.293 H1 EVP 43 EVP H1A H1A H 0 1 N N N 27.754 97.747 34.676 1.164 -5.714 -1.080 H1A EVP 44 EVP H3 H3 H 0 1 N N N 25.261 101.316 33.786 2.981 -2.598 1.566 H3 EVP 45 EVP H5 H5 H 0 1 N N N 25.248 104.002 34.465 2.759 -0.246 2.303 H5 EVP 46 EVP H6 H6 H 0 1 N N N 26.633 105.196 35.210 0.662 1.015 2.185 H6 EVP 47 EVP HO6 HO6 H 0 1 N N N 20.149 102.053 38.283 6.435 1.847 -2.773 HO6 EVP 48 EVP H8 H8 H 0 1 N N N 28.125 106.143 37.948 -0.654 2.820 0.693 H8 EVP 49 EVP H8A H8A H 0 1 N N N 27.081 105.339 39.161 0.148 3.211 -0.863 H8A EVP 50 EVP H9 H9 H 0 1 N N N 26.706 103.659 37.916 1.466 1.179 -0.809 H9 EVP 51 EVP H10 H10 H 0 1 N N N 28.786 103.185 37.526 -0.814 0.254 -1.027 H10 EVP 52 EVP H12 H12 H 0 1 N N N 29.855 101.432 35.983 -1.415 -2.101 -0.584 H12 EVP 53 EVP HO12 HO12 H 0 0 N N N 33.137 105.672 34.181 -5.745 -0.126 3.275 HO12 EVP 54 EVP HO13 HO13 H 0 0 N N N 31.757 104.701 33.775 -2.298 -0.219 3.200 HO13 EVP 55 EVP H15 H15 H 0 1 N N N 25.498 101.327 37.164 2.275 -0.427 -1.347 H15 EVP 56 EVP H19 H19 H 0 1 N N N 22.931 104.602 35.513 4.796 0.943 1.809 H19 EVP 57 EVP H20 H20 H 0 1 N N N 24.618 98.578 39.286 2.583 -1.515 -3.109 H20 EVP 58 EVP H20A H20A H 0 0 N N N 24.832 99.071 37.572 1.976 0.142 -3.339 H20A EVP 59 EVP H20B H20B H 0 0 N N N 25.511 100.086 38.890 2.724 -0.728 -4.699 H20B EVP 60 EVP H21 H21 H 0 1 N N N 19.550 105.492 36.252 7.984 2.110 1.880 H21 EVP 61 EVP H21A H21A H 0 0 N N N 21.223 105.804 36.828 6.239 2.443 1.994 H21A EVP 62 EVP H21B H21B H 0 0 N N N 20.952 105.071 35.210 6.846 0.785 2.223 H21B EVP 63 EVP H22 H22 H 0 1 N N N 31.181 103.654 36.746 -2.650 -0.918 0.370 H22 EVP 64 EVP H23 H23 H 0 1 N N N 32.159 104.615 38.401 -4.441 -0.564 -1.185 H23 EVP 65 EVP H24 H24 H 0 1 N N N 30.929 105.836 40.057 -4.175 1.001 -3.062 H24 EVP 66 EVP H24A H24A H 0 0 N N N 31.070 107.324 39.047 -4.750 2.349 -2.046 H24A EVP 67 EVP H25 H25 H 0 1 N N N 33.394 108.220 38.719 -7.138 2.265 -1.289 H25 EVP 68 EVP H26 H26 H 0 1 N N N 32.524 107.344 36.978 -5.378 1.895 0.367 H26 EVP 69 EVP H27 H27 H 0 1 N N N 32.993 104.444 36.159 -5.098 -1.039 1.165 H27 EVP 70 EVP H28 H28 H 0 1 N N N 30.559 106.045 35.375 -3.565 1.451 2.058 H28 EVP 71 EVP H29 H29 H 0 1 N N N 35.808 107.865 39.000 -8.487 -0.333 -2.146 H29 EVP 72 EVP H29A H29A H 0 0 N N N 34.957 108.117 40.562 -9.221 0.931 -1.130 H29A EVP 73 EVP H29B H29B H 0 0 N N N 35.464 106.465 40.071 -8.808 1.280 -2.826 H29B EVP 74 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EVP C1 O1 SING N N 1 EVP C1 O2 SING N N 2 EVP O1 C13 SING N N 3 EVP C2 O2 SING N N 4 EVP C2 C3 DOUB Y N 5 EVP C2 C13 SING Y N 6 EVP C3 C4 SING Y N 7 EVP O3 C7 SING N N 8 EVP O3 C8 SING N N 9 EVP C4 C5 SING N N 10 EVP C4 C11 DOUB Y N 11 EVP O4 C7 DOUB N N 12 EVP C5 C6 SING N N 13 EVP C5 C14 SING N N 14 EVP O5 C16 SING N N 15 EVP O5 C20 SING N N 16 EVP C6 C7 SING N N 17 EVP C6 C9 SING N N 18 EVP O6 C17 SING N N 19 EVP O7 C18 SING N N 20 EVP O7 C21 SING N N 21 EVP C8 C9 SING N N 22 EVP O8 C10 SING N N 23 EVP O8 C22 SING N N 24 EVP C9 C10 SING N N 25 EVP O9 C22 SING N N 26 EVP O9 C23 SING N N 27 EVP C10 C11 SING N N 28 EVP O10 C24 SING N N 29 EVP O10 C25 SING N N 30 EVP C11 C12 SING Y N 31 EVP O11 C25 SING N N 32 EVP O11 C26 SING N N 33 EVP C12 C13 DOUB Y N 34 EVP O12 C27 SING N N 35 EVP O13 C28 SING N N 36 EVP C14 C15 DOUB Y N 37 EVP C14 C19 SING Y N 38 EVP C15 C16 SING Y N 39 EVP C16 C17 DOUB Y N 40 EVP C17 C18 SING Y N 41 EVP C18 C19 DOUB Y N 42 EVP C22 C28 SING N N 43 EVP C23 C24 SING N N 44 EVP C23 C26 SING N N 45 EVP C25 C29 SING N N 46 EVP C26 C27 SING N N 47 EVP C27 C28 SING N N 48 EVP C1 H1 SING N N 49 EVP C1 H1A SING N N 50 EVP C3 H3 SING N N 51 EVP C5 H5 SING N N 52 EVP C6 H6 SING N N 53 EVP O6 HO6 SING N N 54 EVP C8 H8 SING N N 55 EVP C8 H8A SING N N 56 EVP C9 H9 SING N N 57 EVP C10 H10 SING N N 58 EVP C12 H12 SING N N 59 EVP O12 HO12 SING N N 60 EVP O13 HO13 SING N N 61 EVP C15 H15 SING N N 62 EVP C19 H19 SING N N 63 EVP C20 H20 SING N N 64 EVP C20 H20A SING N N 65 EVP C20 H20B SING N N 66 EVP C21 H21 SING N N 67 EVP C21 H21A SING N N 68 EVP C21 H21B SING N N 69 EVP C22 H22 SING N N 70 EVP C23 H23 SING N N 71 EVP C24 H24 SING N N 72 EVP C24 H24A SING N N 73 EVP C25 H25 SING N N 74 EVP C26 H26 SING N N 75 EVP C27 H27 SING N N 76 EVP C28 H28 SING N N 77 EVP C29 H29 SING N N 78 EVP C29 H29A SING N N 79 EVP C29 H29B SING N N 80 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EVP SMILES ACDLabs 12.01 "O=C1OCC7C1C(c2cc(OC)c(O)c(OC)c2)c4cc3OCOc3cc4C7OC6OC5C(OC(OC5)C)C(O)C6O" EVP InChI InChI 1.03 "InChI=1S/C29H32O13/c1-11-36-9-20-27(40-11)24(31)25(32)29(41-20)42-26-14-7-17-16(38-10-39-17)6-13(14)21(22-15(26)8-37-28(22)33)12-4-18(34-2)23(30)19(5-12)35-3/h4-7,11,15,20-22,24-27,29-32H,8-10H2,1-3H3/t11-,15+,20-,21-,22+,24-,25-,26-,27-,29+/m1/s1" EVP InChIKey InChI 1.03 VJJPUSNTGOMMGY-MRVIYFEKSA-N EVP SMILES_CANONICAL CACTVS 3.370 "COc1cc(cc(OC)c1O)[C@H]2[C@@H]3[C@H](COC3=O)[C@H](O[C@@H]4O[C@@H]5CO[C@@H](C)O[C@H]5[C@H](O)[C@H]4O)c6cc7OCOc7cc26" EVP SMILES CACTVS 3.370 "COc1cc(cc(OC)c1O)[CH]2[CH]3[CH](COC3=O)[CH](O[CH]4O[CH]5CO[CH](C)O[CH]5[CH](O)[CH]4O)c6cc7OCOc7cc26" EVP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C[C@@H]1OC[C@@H]2[C@@H](O1)[C@@H]([C@H]([C@@H](O2)O[C@@H]3c4cc5c(cc4[C@H]([C@@H]6[C@@H]3COC6=O)c7cc(c(c(c7)OC)O)OC)OCO5)O)O" EVP SMILES "OpenEye OEToolkits" 1.7.2 "CC1OCC2C(O1)C(C(C(O2)OC3c4cc5c(cc4C(C6C3COC6=O)c7cc(c(c(c7)OC)O)OC)OCO5)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier EVP "SYSTEMATIC NAME" ACDLabs 12.01 "(5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol-5-yl 4,6-O-[(1R)-ethylidene]-beta-D-glucopyranoside" EVP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(5S,5aR,8aR,9R)-5-[[(2R,4aR,6R,7R,8R,8aS)-2-methyl-7,8-bis(oxidanyl)-4,4a,6,7,8,8a-hexahydropyrano[3,2-d][1,3]dioxin-6-yl]oxy]-9-(3,5-dimethoxy-4-oxidanyl-phenyl)-5a,6,8a,9-tetrahydro-5H-[2]benzofuro[5,6-f][1,3]benzodioxol-8-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EVP "Create component" 2011-03-23 PDBJ EVP "Modify aromatic_flag" 2011-06-04 RCSB EVP "Modify descriptor" 2011-06-04 RCSB EVP "Other modification" 2011-06-23 PDBJ EVP "Modify synonyms" 2020-06-05 PDBE # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 EVP Etoposide ? ? 2 EVP VP-16 ? ? ##