data_F01 # _chem_comp.id F01 _chem_comp.name "4-amino-1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-fluoro-pyrimidin-2-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H12 F N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-amino-5-fluoro-1-((2R,3S,4R,5R)-tetrahydro-3,4-dihydroxy-5-(hydroxymethyl)furan-2-yl)pyrimidin-2(1H)-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-09-29 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 261.207 _chem_comp.one_letter_code ? _chem_comp.three_letter_code F01 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ELC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal F01 O1 O1 O 0 1 N N N 33.489 5.929 42.169 0.163 1.051 1.525 O1 F01 1 F01 C6 C6 C 0 1 N N N 34.077 5.188 41.384 1.080 0.639 0.834 C6 F01 2 F01 N1 N1 N 0 1 N N N 35.116 5.719 40.631 2.334 0.953 1.155 N1 F01 3 F01 C7 C7 C 0 1 N N N 35.799 4.941 39.736 3.350 0.519 0.421 C7 F01 4 F01 N2 N2 N 0 1 N N N 36.778 5.486 39.041 4.641 0.850 0.763 N2 F01 5 F01 C8 C8 C 0 1 N N N 35.466 3.614 39.575 3.100 -0.284 -0.712 C8 F01 6 F01 F1 F1 F 0 1 N N N 36.147 2.877 38.683 4.122 -0.735 -1.472 F1 F01 7 F01 C9 C9 C 0 1 N N N 34.439 3.044 40.314 1.819 -0.594 -1.026 C9 F01 8 F01 N3 N3 N 0 1 N N N 33.719 3.833 41.236 0.808 -0.129 -0.237 N3 F01 9 F01 C1 C1 C 0 1 N N R 32.625 3.251 42.057 -0.582 -0.462 -0.561 C1 F01 10 F01 O4 O4 O 0 1 N N N 33.206 2.004 42.509 -1.378 0.739 -0.657 O4 F01 11 F01 C4 C4 C 0 1 N N R 32.203 0.978 42.381 -2.744 0.306 -0.478 C4 F01 12 F01 C5 C5 C 0 1 N N N 32.899 -0.364 42.075 -3.624 1.482 -0.051 C5 F01 13 F01 O5 O5 O 0 1 N N N 33.586 -0.316 40.799 -3.706 2.428 -1.119 O5 F01 14 F01 C3 C3 C 0 1 N N S 31.389 1.399 41.166 -2.678 -0.752 0.646 C3 F01 15 F01 O3 O3 O 0 1 N N N 30.105 0.831 41.227 -3.597 -1.815 0.387 O3 F01 16 F01 C2 C2 C 0 1 N N R 31.325 2.907 41.322 -1.223 -1.269 0.590 C2 F01 17 F01 O2 O2 O 0 1 N N N 30.222 3.250 42.154 -1.199 -2.667 0.295 O2 F01 18 F01 HN2 HN2 H 0 1 N N N 37.185 4.806 38.431 4.810 1.402 1.543 HN2 F01 19 F01 HN2A HN2A H 0 0 N N N 37.071 6.440 39.113 5.383 0.532 0.225 HN2A F01 20 F01 H9 H9 H 0 1 N N N 34.192 2.001 40.184 1.601 -1.207 -1.889 H9 F01 21 F01 H1 H1 H 0 1 N N N 32.320 3.985 42.818 -0.629 -1.025 -1.493 H1 F01 22 F01 H4 H4 H 0 1 N N N 31.591 0.859 43.287 -3.125 -0.138 -1.398 H4 F01 23 F01 H5 H5 H 0 1 N N N 33.632 -0.575 42.868 -4.623 1.120 0.191 H5 F01 24 F01 H5A H5A H 0 1 N N N 32.134 -1.154 42.032 -3.189 1.962 0.826 H5A F01 25 F01 HO5 HO5 H 0 1 N N N 32.948 -0.306 40.095 -4.249 3.202 -0.918 HO5 F01 26 F01 H3 H3 H 0 1 N N N 31.818 1.080 40.204 -2.887 -0.295 1.613 H3 F01 27 F01 HO3 HO3 H 0 1 N N N 29.858 0.703 42.135 -4.522 -1.535 0.350 HO3 F01 28 F01 H2 H2 H 0 1 N N N 31.210 3.434 40.363 -0.710 -1.067 1.530 H2 F01 29 F01 HO2 HO2 H 0 1 N N N 30.516 3.326 43.054 -1.590 -3.221 0.985 HO2 F01 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal F01 O1 C6 DOUB N N 1 F01 C6 N1 SING N N 2 F01 C6 N3 SING N N 3 F01 N1 C7 DOUB N N 4 F01 C7 N2 SING N N 5 F01 C7 C8 SING N N 6 F01 C8 F1 SING N N 7 F01 C8 C9 DOUB N N 8 F01 C9 N3 SING N N 9 F01 N3 C1 SING N N 10 F01 C1 O4 SING N N 11 F01 C1 C2 SING N N 12 F01 O4 C4 SING N N 13 F01 C4 C5 SING N N 14 F01 C4 C3 SING N N 15 F01 C5 O5 SING N N 16 F01 C3 O3 SING N N 17 F01 C3 C2 SING N N 18 F01 C2 O2 SING N N 19 F01 N2 HN2 SING N N 20 F01 N2 HN2A SING N N 21 F01 C9 H9 SING N N 22 F01 C1 H1 SING N N 23 F01 C4 H4 SING N N 24 F01 C5 H5 SING N N 25 F01 C5 H5A SING N N 26 F01 O5 HO5 SING N N 27 F01 C3 H3 SING N N 28 F01 O3 HO3 SING N N 29 F01 C2 H2 SING N N 30 F01 O2 HO2 SING N N 31 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor F01 SMILES ACDLabs 10.04 "FC=1C(=NC(=O)N(C=1)C2OC(C(O)C2O)CO)N" F01 SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)N(C=C1F)[C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O" F01 SMILES CACTVS 3.341 "NC1=NC(=O)N(C=C1F)[CH]2O[CH](CO)[CH](O)[CH]2O" F01 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=C(C(=NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O)N)F" F01 SMILES "OpenEye OEToolkits" 1.5.0 "C1=C(C(=NC(=O)N1C2C(C(C(O2)CO)O)O)N)F" F01 InChI InChI 1.03 "InChI=1S/C9H12FN3O5/c10-3-1-13(9(17)12-7(3)11)8-6(16)5(15)4(2-14)18-8/h1,4-6,8,14-16H,2H2,(H2,11,12,17)/t4-,5-,6-,8-/m1/s1" F01 InChIKey InChI 1.03 STRZQWQNZQMHQR-UAKXSSHOSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier F01 "SYSTEMATIC NAME" ACDLabs 10.04 5-fluorocytidine F01 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-amino-1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-fluoro-pyrimidin-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site F01 "Create component" 2008-09-29 PDBJ F01 "Modify descriptor" 2011-06-04 RCSB F01 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id F01 _pdbx_chem_comp_synonyms.name "4-amino-5-fluoro-1-((2R,3S,4R,5R)-tetrahydro-3,4-dihydroxy-5-(hydroxymethyl)furan-2-yl)pyrimidin-2(1H)-one" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##