data_F3O # _chem_comp.id F3O _chem_comp.name ;3'-O-L-phenylalanyladenosine 5'-(dihydrogen phosphate) ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C19 H23 N6 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-07-01 _chem_comp.pdbx_modified_date 2023-09-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status OBS _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 494.395 _chem_comp.one_letter_code ? _chem_comp.three_letter_code F3O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4QJT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal F3O P P P 0 1 N N N 131.311 3.949 44.074 1.002 5.295 -0.184 P F3O 1 F3O OP1 OP1 O 0 1 N N N 130.630 5.289 43.815 -0.440 5.912 0.183 OP1 F3O 2 F3O OP2 OP2 O 0 1 N N N 132.810 4.119 43.752 1.915 5.455 0.969 OP2 F3O 3 F3O "C1'" "C1'" C 0 1 N N R 127.040 3.718 46.522 1.760 -0.476 -0.400 "C1'" F3O 4 F3O "C2'" "C2'" C 0 1 N N R 127.289 4.769 47.586 0.943 -0.713 0.896 "C2'" F3O 5 F3O "O2'" "O2'" O 0 1 N N N 126.082 5.394 47.968 0.400 -2.035 0.922 "O2'" F3O 6 F3O "C3'" "C3'" C 0 1 N N S 128.325 5.662 46.897 -0.181 0.343 0.767 "C3'" F3O 7 F3O "O3'" "O3'" O 0 1 N N N 127.676 6.609 46.039 -1.391 -0.263 0.241 "O3'" F3O 8 F3O "C4'" "C4'" C 0 1 N N R 129.108 4.668 46.037 0.384 1.378 -0.225 "C4'" F3O 9 F3O "O4'" "O4'" O 0 1 N N N 128.282 3.483 45.925 1.714 0.957 -0.570 "O4'" F3O 10 F3O "C5'" "C5'" C 0 1 N N N 130.453 4.246 46.558 0.429 2.759 0.432 "C5'" F3O 11 F3O "O5'" "O5'" O 0 1 N N N 131.173 3.481 45.591 0.843 3.731 -0.530 "O5'" F3O 12 F3O N9 N9 N 0 1 Y N N 126.570 2.465 47.070 3.142 -0.931 -0.229 N9 F3O 13 F3O C8 C8 C 0 1 Y N N 126.989 1.851 48.177 4.206 -0.161 0.137 C8 F3O 14 F3O N7 N7 N 0 1 Y N N 126.267 0.737 48.337 5.283 -0.888 0.193 N7 F3O 15 F3O C6 C6 C 0 1 Y N N 124.353 -0.200 46.884 5.716 -3.362 -0.239 C6 F3O 16 F3O N6 N6 N 0 1 N N N 124.078 -1.326 47.616 7.075 -3.381 0.019 N6 F3O 17 F3O C5 C5 C 0 1 Y N N 125.368 0.669 47.299 4.981 -2.168 -0.132 C5 F3O 18 F3O C4 C4 C 0 1 Y N N 125.573 1.774 46.490 3.602 -2.213 -0.400 C4 F3O 19 F3O N3 N3 N 0 1 Y N N 124.832 1.968 45.383 3.047 -3.371 -0.741 N3 F3O 20 F3O C2 C2 C 0 1 Y N N 123.908 1.115 45.052 3.775 -4.465 -0.824 C2 F3O 21 F3O N1 N1 N 0 1 Y N N 123.659 0.050 45.775 5.072 -4.473 -0.578 N1 F3O 22 F3O C C C 0 1 N N N 127.100 7.695 46.740 -2.273 -0.739 1.133 C F3O 23 F3O O O O 0 1 N N N 127.489 7.935 47.846 -2.042 -0.652 2.316 O F3O 24 F3O CA CA C 0 1 N N S 125.785 8.312 46.278 -3.551 -1.382 0.661 CA F3O 25 F3O N N N 0 1 N N N 125.212 7.524 45.209 -4.101 -2.224 1.731 N F3O 26 F3O CB CB C 0 1 N N N 124.859 8.576 47.517 -4.564 -0.295 0.296 CB F3O 27 F3O CG CG C 0 1 Y N N 123.515 9.286 47.215 -5.797 -0.933 -0.291 CG F3O 28 F3O CD1 CD1 C 0 1 Y N N 122.442 9.173 48.112 -6.841 -1.307 0.533 CD1 F3O 29 F3O CE1 CE1 C 0 1 Y N N 121.232 9.813 47.816 -7.971 -1.893 -0.006 CE1 F3O 30 F3O CZ CZ C 0 1 Y N N 121.047 10.560 46.635 -8.057 -2.105 -1.369 CZ F3O 31 F3O CE2 CE2 C 0 1 Y N N 122.103 10.674 45.728 -7.012 -1.732 -2.194 CE2 F3O 32 F3O CD2 CD2 C 0 1 Y N N 123.326 10.038 46.033 -5.884 -1.140 -1.655 CD2 F3O 33 F3O H1 H1 H 0 1 N N N 131.275 5.920 43.517 -1.090 5.841 -0.529 H1 F3O 34 F3O H3 H3 H 0 1 N N N 126.318 4.107 45.789 1.293 -0.981 -1.246 H3 F3O 35 F3O H4 H4 H 0 1 N N N 127.762 4.289 48.456 1.553 -0.528 1.780 H4 F3O 36 F3O H5 H5 H 0 1 N N N 126.215 6.333 48.025 1.068 -2.734 0.911 H5 F3O 37 F3O H6 H6 H 0 1 N N N 128.981 6.145 47.636 -0.379 0.809 1.733 H6 F3O 38 F3O H7 H7 H 0 1 N N N 129.243 5.110 45.039 -0.240 1.413 -1.119 H7 F3O 39 F3O H8 H8 H 0 1 N N N 130.311 3.636 47.462 -0.562 3.016 0.804 H8 F3O 40 F3O H9 H9 H 0 1 N N N 131.036 5.144 46.810 1.136 2.744 1.261 H9 F3O 41 F3O H10 H10 H 0 1 N N N 127.776 2.194 48.832 4.161 0.897 0.348 H10 F3O 42 F3O H11 H11 H 0 1 N N N 123.339 -1.837 47.178 7.532 -2.564 0.276 H11 F3O 43 F3O H12 H12 H 0 1 N N N 124.896 -1.900 47.665 7.572 -4.210 -0.058 H12 F3O 44 F3O H13 H13 H 0 1 N N N 123.330 1.289 44.157 3.293 -5.390 -1.104 H13 F3O 45 F3O H14 H14 H 0 1 N N N 126.031 9.301 45.865 -3.346 -1.996 -0.216 H14 F3O 46 F3O H15 H15 H 0 1 N N N 124.351 7.938 44.914 -3.478 -2.989 1.945 H15 F3O 47 F3O H16 H16 H 0 1 N N N 125.849 7.495 44.438 -4.299 -1.678 2.556 H16 F3O 48 F3O H18 H18 H 0 1 N N N 124.631 7.605 47.981 -4.837 0.263 1.192 H18 F3O 49 F3O H19 H19 H 0 1 N N N 125.418 9.201 48.229 -4.123 0.383 -0.434 H19 F3O 50 F3O H20 H20 H 0 1 N N N 122.548 8.599 49.021 -6.775 -1.141 1.598 H20 F3O 51 F3O H21 H21 H 0 1 N N N 120.413 9.732 48.516 -8.788 -2.185 0.638 H21 F3O 52 F3O H22 H22 H 0 1 N N N 120.100 11.039 46.434 -8.939 -2.563 -1.790 H22 F3O 53 F3O H23 H23 H 0 1 N N N 121.987 11.236 44.813 -7.080 -1.893 -3.259 H23 F3O 54 F3O H24 H24 H 0 1 N N N 124.147 10.129 45.338 -5.068 -0.848 -2.299 H24 F3O 55 F3O OP3 OP3 O 0 1 N Y N ? ? ? 1.607 6.068 -1.460 OP3 F3O 56 F3O H2 H2 H 0 1 N Y N ? ? ? 1.730 7.018 -1.323 H2 F3O 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal F3O OP2 P DOUB N N 1 F3O OP1 P SING N N 2 F3O P "O5'" SING N N 3 F3O C2 N3 DOUB Y N 4 F3O C2 N1 SING Y N 5 F3O N CA SING N N 6 F3O N3 C4 SING Y N 7 F3O "O5'" "C5'" SING N N 8 F3O CE2 CD2 DOUB Y N 9 F3O CE2 CZ SING Y N 10 F3O N1 C6 DOUB Y N 11 F3O "O4'" "C4'" SING N N 12 F3O "O4'" "C1'" SING N N 13 F3O CD2 CG SING Y N 14 F3O "C4'" "C5'" SING N N 15 F3O "C4'" "C3'" SING N N 16 F3O "O3'" C SING N N 17 F3O "O3'" "C3'" SING N N 18 F3O CA C SING N N 19 F3O CA CB SING N N 20 F3O C4 N9 SING Y N 21 F3O C4 C5 DOUB Y N 22 F3O "C1'" N9 SING N N 23 F3O "C1'" "C2'" SING N N 24 F3O CZ CE1 DOUB Y N 25 F3O C O DOUB N N 26 F3O C6 C5 SING Y N 27 F3O C6 N6 SING N N 28 F3O "C3'" "C2'" SING N N 29 F3O N9 C8 SING Y N 30 F3O CG CB SING N N 31 F3O CG CD1 DOUB Y N 32 F3O C5 N7 SING Y N 33 F3O "C2'" "O2'" SING N N 34 F3O CE1 CD1 SING Y N 35 F3O C8 N7 DOUB Y N 36 F3O OP1 H1 SING N N 37 F3O "C1'" H3 SING N N 38 F3O "C2'" H4 SING N N 39 F3O "O2'" H5 SING N N 40 F3O "C3'" H6 SING N N 41 F3O "C4'" H7 SING N N 42 F3O "C5'" H8 SING N N 43 F3O "C5'" H9 SING N N 44 F3O C8 H10 SING N N 45 F3O N6 H11 SING N N 46 F3O N6 H12 SING N N 47 F3O C2 H13 SING N N 48 F3O CA H14 SING N N 49 F3O N H15 SING N N 50 F3O N H16 SING N N 51 F3O CB H18 SING N N 52 F3O CB H19 SING N N 53 F3O CD1 H20 SING N N 54 F3O CE1 H21 SING N N 55 F3O CZ H22 SING N N 56 F3O CE2 H23 SING N N 57 F3O CD2 H24 SING N N 58 F3O P OP3 SING N N 59 F3O OP3 H2 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor F3O SMILES ACDLabs 12.01 "O=P(O)(O)OCC4OC(n2cnc1c(ncnc12)N)C(O)C4OC(=O)C(N)Cc3ccccc3" F3O InChI InChI 1.03 "InChI=1S/C19H23N6O8P/c20-11(6-10-4-2-1-3-5-10)19(27)33-15-12(7-31-34(28,29)30)32-18(14(15)26)25-9-24-13-16(21)22-8-23-17(13)25/h1-5,8-9,11-12,14-15,18,26H,6-7,20H2,(H2,21,22,23)(H2,28,29,30)/t11-,12+,14+,15+,18+/m0/s1" F3O InChIKey InChI 1.03 DITNEQHUTYSTHA-URQYDQELSA-N F3O SMILES_CANONICAL CACTVS 3.385 "N[C@@H](Cc1ccccc1)C(=O)O[C@H]2[C@@H](O)[C@@H](O[C@@H]2CO[P](O)(O)=O)n3cnc4c(N)ncnc34" F3O SMILES CACTVS 3.385 "N[CH](Cc1ccccc1)C(=O)O[CH]2[CH](O)[CH](O[CH]2CO[P](O)(O)=O)n3cnc4c(N)ncnc34" F3O SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C[C@@H](C(=O)O[C@@H]2[C@H](O[C@H]([C@@H]2O)n3cnc4c3ncnc4N)COP(=O)(O)O)N" F3O SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CC(C(=O)OC2C(OC(C2O)n3cnc4c3ncnc4N)COP(=O)(O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier F3O "SYSTEMATIC NAME" ACDLabs 12.01 ;3'-O-L-phenylalanyladenosine 5'-(dihydrogen phosphate) ; F3O "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-2-(phosphonooxymethyl)oxolan-3-yl] (2S)-2-azanyl-3-phenyl-propanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site F3O "Create component" 2014-07-01 RCSB F3O "Initial release" 2014-10-01 RCSB F3O "Obsolete component" 2023-08-17 RCSB #