data_F42 # _chem_comp.id F42 _chem_comp.name "COENZYME F420" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H36 N5 O18 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-06-20 _chem_comp.pdbx_modified_date 2012-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 773.593 _chem_comp.one_letter_code ? _chem_comp.three_letter_code F42 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1JAY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal F42 N1 N1 N 0 1 Y N N 25.789 31.312 17.097 7.131 -2.786 -0.718 N1 F42 1 F42 C2 C2 C 0 1 Y N N 25.885 30.065 17.545 7.362 -3.700 -1.655 C2 F42 2 F42 O2 O2 O 0 1 N N N 27.005 29.537 17.595 6.484 -4.512 -1.890 O2 F42 3 F42 N3 N3 N 0 1 Y N N 24.746 29.379 17.937 8.501 -3.783 -2.357 N3 F42 4 F42 C4 C4 C 0 1 Y N N 23.483 30.001 17.887 9.518 -2.914 -2.148 C4 F42 5 F42 O4 O4 O 0 1 N N N 22.501 29.361 18.255 10.554 -2.984 -2.782 O4 F42 6 F42 C4A C4A C 0 1 Y N N 23.386 31.347 17.400 9.316 -1.880 -1.121 C4A F42 7 F42 C5 C5 C 0 1 Y N N 22.138 31.933 17.060 10.283 -0.939 -0.820 C5 F42 8 F42 C5A C5A C 0 1 Y N N 22.042 33.201 16.404 10.011 0.020 0.180 C5A F42 9 F42 C6 C6 C 0 1 Y N N 20.788 33.807 16.111 10.977 0.989 0.507 C6 F42 10 F42 C7 C7 C 0 1 Y N N 20.690 34.933 15.231 10.713 1.913 1.472 C7 F42 11 F42 C8 C8 C 0 1 Y N N 21.933 35.524 14.770 9.489 1.907 2.143 C8 F42 12 F42 O8M O8M O 0 1 N N N 21.995 36.658 14.027 9.243 2.835 3.102 O8M F42 13 F42 C9 C9 C 0 1 Y N N 23.190 35.015 15.142 8.524 0.963 1.837 C9 F42 14 F42 C9A C9A C 0 1 Y N N 23.280 33.846 15.966 8.772 0.011 0.856 C9A F42 15 F42 N10 N10 N 0 1 Y N N 24.503 33.230 16.323 7.808 -0.929 0.554 N10 F42 16 F42 C10 C10 C 0 1 Y N N 24.589 31.979 16.970 8.037 -1.868 -0.406 C10 F42 17 F42 "C1'" C1* C 0 1 N N N 25.793 33.914 16.069 6.531 -0.917 1.271 "C1'" F42 18 F42 "C2'" C2* C 0 1 N N S 26.295 34.738 17.281 5.535 -0.028 0.524 "C2'" F42 19 F42 "O2'" O2* O 0 1 N N N 25.270 35.624 17.760 6.049 1.303 0.445 "O2'" F42 20 F42 "C3'" C3* C 0 1 N N S 27.654 35.451 16.982 4.201 -0.016 1.272 "C3'" F42 21 F42 "O3'" O3* O 0 1 N N N 27.566 36.188 15.746 3.686 -1.347 1.351 "O3'" F42 22 F42 "C4'" C4* C 0 1 N N R 28.860 34.441 16.845 3.204 0.873 0.525 "C4'" F42 23 F42 "O4'" O4* O 0 1 N N N 28.787 33.463 17.898 3.719 2.204 0.447 "O4'" F42 24 F42 "C5'" C5* C 0 1 N N N 30.249 35.141 16.870 1.870 0.886 1.274 "C5'" F42 25 F42 "O5'" O5* O 0 1 N N N 30.406 35.686 18.170 0.906 1.620 0.517 "O5'" F42 26 F42 P P P 0 1 N N R 31.530 36.632 18.665 -0.612 1.837 1.006 P F42 27 F42 O1P O1P O 0 1 N N N 32.563 35.796 19.288 -1.234 0.522 1.283 O1P F42 28 F42 O2P O2P O 0 1 N N N 31.865 37.567 17.592 -0.622 2.728 2.346 O2P F42 29 F42 O3P O3P O 0 1 N N N 30.748 37.409 19.814 -1.445 2.592 -0.147 O3P F42 30 F42 C1I C1I C 0 1 N N S 31.253 38.473 20.653 -2.850 2.838 -0.058 C1I F42 31 F42 C2I C2I C 0 1 N N N 32.403 37.942 21.510 -3.109 4.345 -0.117 C2I F42 32 F42 C3I C3I C 0 1 N N N 31.714 39.682 19.842 -3.551 2.162 -1.209 C3I F42 33 F42 O3I O3I O 0 1 N N N 32.555 39.556 18.953 -2.911 1.533 -2.024 O3I F42 34 F42 N1H N1H N 0 1 N N N 31.356 40.868 20.326 -4.890 2.258 -1.332 N1H F42 35 F42 C1H C1H C 0 1 N N S 31.374 42.073 19.505 -5.572 1.602 -2.450 C1H F42 36 F42 C2H C2H C 0 1 N N N 32.805 42.525 19.229 -5.541 2.504 -3.656 C2H F42 37 F42 O2U O2U O 0 1 N N N 33.063 42.998 18.102 -6.110 2.108 -4.806 O2U F42 38 F42 O2T O2T O 0 1 N N N 33.648 42.400 20.142 -5.005 3.585 -3.589 O2T F42 39 F42 C3H C3H C 0 1 N N N 30.605 43.195 20.208 -7.024 1.315 -2.064 C3H F42 40 F42 C4H C4H C 0 1 N N N 29.173 42.828 20.557 -7.057 0.301 -0.919 C4H F42 41 F42 C5H C5H C 0 1 N N N 28.437 43.941 21.277 -8.487 0.018 -0.539 C5H F42 42 F42 O5H O5H O 0 1 N N N 27.209 44.006 21.235 -9.392 0.573 -1.126 O5H F42 43 F42 N1G N1G N 0 1 N N N 29.176 44.746 22.033 -8.762 -0.851 0.454 N1G F42 44 F42 C1G C1G C 0 1 N N S 28.621 45.952 22.639 -10.152 -1.126 0.823 C1G F42 45 F42 C2G C2G C 0 1 N N N 27.732 46.712 21.661 -10.628 -0.083 1.801 C2G F42 46 F42 O2V O2V O 0 1 N N N 27.999 46.597 20.446 -11.880 -0.134 2.281 O2V F42 47 F42 O2W O2W O 0 1 N N N 27.090 47.678 22.123 -9.882 0.799 2.154 O2W F42 48 F42 C3G C3G C 0 1 N N N 29.748 46.867 23.120 -10.244 -2.510 1.469 C3G F42 49 F42 C4G C4G C 0 1 N N N 30.598 46.279 24.231 -9.881 -3.580 0.437 C4G F42 50 F42 C5G C5G C 0 1 N N N 31.714 47.211 24.659 -9.972 -4.943 1.073 C5G F42 51 F42 O6G O6G O 0 1 N N N 31.416 48.372 25.011 -9.694 -6.040 0.352 O6G F42 52 F42 O7G O7G O 0 1 N N N 32.887 46.782 24.644 -10.294 -5.048 2.233 O7G F42 53 F42 HN3 HN3 H 0 1 N N N 24.837 28.416 18.262 8.599 -4.478 -3.027 HN3 F42 54 F42 H5 H5 H 0 1 N N N 21.214 31.386 17.313 11.230 -0.938 -1.340 H5 F42 55 F42 H6 H6 H 0 1 N N N 19.875 33.396 16.574 11.927 1.001 -0.007 H6 F42 56 F42 HC7 HC7 H 0 1 N N N 19.706 35.325 14.923 11.457 2.656 1.720 HC7 F42 57 F42 HM81 1HM8 H 0 0 N N N 22.808 37.044 13.725 8.834 3.646 2.769 HM81 F42 58 F42 H9 H9 H 0 1 N N N 24.099 35.529 14.789 7.579 0.966 2.361 H9 F42 59 F42 "H1'1" 1H1* H 0 0 N N N 26.569 33.186 15.734 6.138 -1.932 1.331 "H1'1" F42 60 F42 "H1'2" 2H1* H 0 0 N N N 25.732 34.549 15.154 6.682 -0.526 2.277 "H1'2" F42 61 F42 "H2'" H2* H 0 1 N N N 26.514 34.032 18.116 5.383 -0.419 -0.482 "H2'" F42 62 F42 "HO2'" *HO2 H 0 0 N N N 25.577 36.129 18.503 6.209 1.714 1.306 "HO2'" F42 63 F42 "H3'" H3* H 0 1 N N N 27.845 36.124 17.849 4.352 0.375 2.279 "H3'" F42 64 F42 "HO3'" *HO3 H 0 0 N N N 28.391 36.621 15.564 3.526 -1.758 0.490 "HO3'" F42 65 F42 "H4'" H4* H 0 1 N N N 28.766 33.951 15.847 3.053 0.482 -0.481 "H4'" F42 66 F42 "HO4'" *HO4 H 0 0 N N N 29.512 32.855 17.815 3.879 2.615 1.307 "HO4'" F42 67 F42 "H5'1" 1H5* H 0 0 N N N 31.086 34.468 16.570 1.521 -0.138 1.411 "H5'1" F42 68 F42 "H5'2" 2H5* H 0 0 N N N 30.377 35.894 16.058 2.004 1.358 2.247 "H5'2" F42 69 F42 HOP2 2HOP H 0 0 N N N 32.553 38.146 17.895 -0.229 3.605 2.239 HOP2 F42 70 F42 H1I1 1H1I H 0 0 N N N 30.417 38.818 21.306 -3.230 2.440 0.883 H1I1 F42 71 F42 H2I1 1H2I H 0 0 N N N 32.792 38.762 22.156 -4.181 4.532 -0.049 H2I1 F42 72 F42 H2I2 2H2I H 0 0 N N N 32.109 37.042 22.100 -2.602 4.833 0.715 H2I2 F42 73 F42 H2I3 3H2I H 0 0 N N N 33.205 37.472 20.894 -2.729 4.742 -1.058 H2I3 F42 74 F42 HNH1 1HNH H 0 0 N N N 31.073 40.853 21.306 -5.402 2.762 -0.679 HNH1 F42 75 F42 H1H1 1H1H H 0 0 N N N 30.884 41.838 18.531 -5.066 0.665 -2.684 H1H1 F42 76 F42 HXU HXU H 0 1 N N N 33.953 43.279 17.930 -6.065 2.721 -5.552 HXU F42 77 F42 H3H1 1H3H H 0 0 N N N 31.154 43.540 21.114 -7.505 2.239 -1.744 H3H1 F42 78 F42 H3H2 2H3H H 0 0 N N N 30.635 44.131 19.603 -7.555 0.908 -2.925 H3H2 F42 79 F42 H4H1 1H4H H 0 0 N N N 28.612 42.501 19.649 -6.576 -0.624 -1.238 H4H1 F42 80 F42 H4H2 2H4H H 0 0 N N N 29.136 41.880 21.144 -6.526 0.707 -0.058 H4H2 F42 81 F42 HNG1 1HNG H 0 0 N N N 30.144 44.445 22.145 -8.038 -1.295 0.924 HNG1 F42 82 F42 H1G1 1H1G H 0 0 N N N 27.996 45.635 23.506 -10.777 -1.100 -0.069 H1G1 F42 83 F42 HXV HXV H 0 1 N N N 27.445 47.070 19.836 -12.140 0.557 2.906 HXV F42 84 F42 H3G1 1H3G H 0 0 N N N 30.389 47.179 22.262 -9.552 -2.566 2.309 H3G1 F42 85 F42 H3G2 2H3G H 0 0 N N N 29.341 47.859 23.424 -11.261 -2.679 1.824 H3G2 F42 86 F42 H4G1 1H4G H 0 0 N N N 29.969 45.977 25.101 -10.573 -3.524 -0.403 H4G1 F42 87 F42 H4G2 2H4G H 0 0 N N N 30.997 45.278 23.944 -8.864 -3.411 0.082 H4G2 F42 88 F42 HXT HXT H 0 1 N N N 32.115 48.956 25.279 -9.766 -6.892 0.803 HXT F42 89 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal F42 N1 C2 SING Y N 1 F42 N1 C10 DOUB Y N 2 F42 C2 O2 DOUB N N 3 F42 C2 N3 SING Y N 4 F42 N3 C4 SING Y N 5 F42 N3 HN3 SING N N 6 F42 C4 O4 DOUB N N 7 F42 C4 C4A SING Y N 8 F42 C4A C5 DOUB Y N 9 F42 C4A C10 SING Y N 10 F42 C5 C5A SING Y N 11 F42 C5 H5 SING N N 12 F42 C5A C6 DOUB Y N 13 F42 C5A C9A SING Y N 14 F42 C6 C7 SING Y N 15 F42 C6 H6 SING N N 16 F42 C7 C8 DOUB Y N 17 F42 C7 HC7 SING N N 18 F42 C8 O8M SING N N 19 F42 C8 C9 SING Y N 20 F42 O8M HM81 SING N N 21 F42 C9 C9A DOUB Y N 22 F42 C9 H9 SING N N 23 F42 C9A N10 SING Y N 24 F42 N10 C10 SING Y N 25 F42 N10 "C1'" SING N N 26 F42 "C1'" "C2'" SING N N 27 F42 "C1'" "H1'1" SING N N 28 F42 "C1'" "H1'2" SING N N 29 F42 "C2'" "O2'" SING N N 30 F42 "C2'" "C3'" SING N N 31 F42 "C2'" "H2'" SING N N 32 F42 "O2'" "HO2'" SING N N 33 F42 "C3'" "O3'" SING N N 34 F42 "C3'" "C4'" SING N N 35 F42 "C3'" "H3'" SING N N 36 F42 "O3'" "HO3'" SING N N 37 F42 "C4'" "O4'" SING N N 38 F42 "C4'" "C5'" SING N N 39 F42 "C4'" "H4'" SING N N 40 F42 "O4'" "HO4'" SING N N 41 F42 "C5'" "O5'" SING N N 42 F42 "C5'" "H5'1" SING N N 43 F42 "C5'" "H5'2" SING N N 44 F42 "O5'" P SING N N 45 F42 P O1P DOUB N N 46 F42 P O2P SING N N 47 F42 P O3P SING N N 48 F42 O2P HOP2 SING N N 49 F42 O3P C1I SING N N 50 F42 C1I C2I SING N N 51 F42 C1I C3I SING N N 52 F42 C1I H1I1 SING N N 53 F42 C2I H2I1 SING N N 54 F42 C2I H2I2 SING N N 55 F42 C2I H2I3 SING N N 56 F42 C3I O3I DOUB N N 57 F42 C3I N1H SING N N 58 F42 N1H C1H SING N N 59 F42 N1H HNH1 SING N N 60 F42 C1H C2H SING N N 61 F42 C1H C3H SING N N 62 F42 C1H H1H1 SING N N 63 F42 C2H O2U SING N N 64 F42 C2H O2T DOUB N N 65 F42 O2U HXU SING N N 66 F42 C3H C4H SING N N 67 F42 C3H H3H1 SING N N 68 F42 C3H H3H2 SING N N 69 F42 C4H C5H SING N N 70 F42 C4H H4H1 SING N N 71 F42 C4H H4H2 SING N N 72 F42 C5H O5H DOUB N N 73 F42 C5H N1G SING N N 74 F42 N1G C1G SING N N 75 F42 N1G HNG1 SING N N 76 F42 C1G C2G SING N N 77 F42 C1G C3G SING N N 78 F42 C1G H1G1 SING N N 79 F42 C2G O2V SING N N 80 F42 C2G O2W DOUB N N 81 F42 O2V HXV SING N N 82 F42 C3G C4G SING N N 83 F42 C3G H3G1 SING N N 84 F42 C3G H3G2 SING N N 85 F42 C4G C5G SING N N 86 F42 C4G H4G1 SING N N 87 F42 C4G H4G2 SING N N 88 F42 C5G O6G SING N N 89 F42 C5G O7G DOUB N N 90 F42 O6G HXT SING N N 91 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor F42 SMILES ACDLabs 10.04 "O=C(O)C(NC(=O)CCC(C(=O)O)NC(=O)C(OP(=O)(O)OCC(O)C(O)C(O)CN3c1c(ccc(O)c1)C=C2C3=NC(=O)NC2=O)C)CCC(=O)O" F42 InChI InChI 1.03 ;InChI=1S/C29H36N5O18P/c1-12(25(42)31-17(28(46)47)4-6-21(38)30-16(27(44)45)5-7-22(39)40)52-53(49,50)51-11-20(37)23(41)19(36)10-34-18-9-14(35)3-2-13(18)8-15-24(34)32-29(48)33-26(15)43/h2-3,8-9,12,16-17,19-20,23,35-37,41H,4-7,10-11H2,1H3,(H,30,38)(H,31,42)(H,39,40)(H,44,45)(H,46,47)(H,49,50)(H,33,43,48)/t12-,16-,17-,19-,20+,23-/m0/s1 ; F42 InChIKey InChI 1.03 GEHSZWRGPHDXJO-NALJQGANSA-N F42 SMILES_CANONICAL CACTVS 3.385 "C[C@H](O[P](O)(=O)OC[C@@H](O)[C@@H](O)[C@@H](O)CN1c2cc(O)ccc2C=C3C(=O)NC(=O)N=C13)C(=O)N[C@@H](CCC(=O)N[C@@H](CCC(O)=O)C(O)=O)C(O)=O" F42 SMILES CACTVS 3.385 "C[CH](O[P](O)(=O)OC[CH](O)[CH](O)[CH](O)CN1c2cc(O)ccc2C=C3C(=O)NC(=O)N=C13)C(=O)N[CH](CCC(=O)N[CH](CCC(O)=O)C(O)=O)C(O)=O" F42 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "C[C@@H](C(=O)N[C@@H](CCC(=O)N[C@@H](CCC(=O)O)C(=O)O)C(=O)O)O[P@](=O)(O)OC[C@H]([C@H]([C@H](CN1c2cc(ccc2C=C3C1=NC(=O)NC3=O)O)O)O)O" F42 SMILES "OpenEye OEToolkits" 1.7.5 "CC(C(=O)NC(CCC(=O)NC(CCC(=O)O)C(=O)O)C(=O)O)OP(=O)(O)OCC(C(C(CN1c2cc(ccc2C=C3C1=NC(=O)NC3=O)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier F42 "SYSTEMATIC NAME" ACDLabs 10.04 "(3S,8S,11S,13R,16R,17S,18S)-13,16,17,18-tetrahydroxy-19-(8-hydroxy-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-11-methyl-5,10-dioxo-12,14-dioxa-4,9-diaza-13-phosphanonadecane-1,3,8-tricarboxylic acid 13-oxide (non-preferred name)" F42 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[(4S)-5-hydroxy-4-[[(2S)-2-[hydroxy-[(2R,3S,4S)-2,3,4-trihydroxy-5-(8-hydroxy-2,4-dioxo-pyrimido[4,5-b]quinolin-10-yl)pentoxy]phosphoryl]oxypropanoyl]amino]-5-oxo-pentanoyl]amino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site F42 "Create component" 2001-06-20 RCSB F42 "Modify aromatic_flag" 2011-06-04 RCSB F42 "Modify descriptor" 2011-06-04 RCSB F42 "Modify descriptor" 2012-01-05 RCSB F42 "Modify coordinates" 2012-01-05 RCSB #