data_F5O # _chem_comp.id F5O _chem_comp.name "4-[[(1R)-2-[5-(2-fluoranyl-3-methoxy-phenyl)-3-[[2-fluoranyl-6-(trifluoromethyl)phenyl]methyl]-4-methyl-2,6-bis(oxidanylidene)pyrimidin-1-yl]-1-phenyl-ethyl]amino]butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H30 F5 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-03-31 _chem_comp.pdbx_modified_date 2020-10-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 631.590 _chem_comp.one_letter_code ? _chem_comp.three_letter_code F5O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7BR3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal F5O CAA C1 C 0 1 N N N -23.823 23.093 -12.929 4.003 -2.224 -4.345 CAA F5O 1 F5O CAB C2 C 0 1 N N N -22.530 22.570 -12.274 4.225 -1.172 -3.290 CAB F5O 2 F5O CAC C3 C 0 1 N N N -22.120 21.145 -12.722 3.396 -1.511 -2.049 CAC F5O 3 F5O CAD C4 C 0 1 N N N -22.998 20.032 -12.081 3.621 -0.442 -0.978 CAD F5O 4 F5O CAH C5 C 0 1 N N R -25.226 19.569 -11.543 3.017 0.240 1.265 CAH F5O 5 F5O CAI C6 C 0 1 N N N -25.414 20.453 -10.260 1.793 0.258 2.183 CAI F5O 6 F5O CAJ C7 C 0 1 Y N N -26.580 19.239 -12.144 4.244 -0.103 2.071 CAJ F5O 7 F5O CAK C8 C 0 1 Y N N -27.331 20.224 -12.781 4.515 -1.420 2.391 CAK F5O 8 F5O CAL C9 C 0 1 Y N N -28.577 19.895 -13.326 5.643 -1.734 3.126 CAL F5O 9 F5O CAM C10 C 0 1 Y N N -29.072 18.596 -13.240 6.500 -0.732 3.539 CAM F5O 10 F5O CAN C11 C 0 1 Y N N -28.317 17.621 -12.604 6.230 0.585 3.218 CAN F5O 11 F5O CAO C12 C 0 1 Y N N -27.076 17.943 -12.060 5.102 0.900 2.484 CAO F5O 12 F5O CAP C13 C 0 1 N N N -27.589 20.209 -9.100 -0.083 -0.582 0.883 CAP F5O 13 F5O CAR C14 C 0 1 N N N -28.126 18.402 -7.774 -1.699 0.806 -0.136 CAR F5O 14 F5O CAS C15 C 0 1 N N N -26.868 17.847 -8.013 -1.065 1.914 0.343 CAS F5O 15 F5O CAT C16 C 0 1 N N N -26.001 18.545 -8.835 0.149 1.728 1.149 CAT F5O 16 F5O CAX C17 C 0 1 N N N -29.132 17.648 -6.867 -2.947 0.946 -0.969 CAX F5O 17 F5O CAY C18 C 0 1 N N N -29.789 20.161 -8.029 -1.878 -1.619 -0.372 CAY F5O 18 F5O CAZ C19 C 0 1 Y N N -30.665 20.487 -9.234 -2.896 -2.090 0.634 CAZ F5O 19 F5O CBA C20 C 0 1 Y N N -30.904 19.484 -10.158 -3.065 -1.401 1.823 CBA F5O 20 F5O CBB C21 C 0 1 Y N N -31.697 19.715 -11.272 -4.001 -1.835 2.747 CBB F5O 21 F5O CBC C22 C 0 1 Y N N -32.264 20.975 -11.458 -4.765 -2.955 2.482 CBC F5O 22 F5O CBD C23 C 0 1 Y N N -32.024 21.988 -10.519 -4.596 -3.642 1.294 CBD F5O 23 F5O CBE C24 C 0 1 Y N N -31.232 21.751 -9.406 -3.666 -3.207 0.368 CBE F5O 24 F5O CBF C25 C 0 1 N N N -31.012 22.948 -8.395 -3.483 -3.957 -0.925 CBF F5O 25 F5O CBK C26 C 0 1 Y N N -26.426 16.497 -7.420 -1.588 3.272 0.057 CBK F5O 26 F5O CBL C27 C 0 1 Y N N -26.979 15.310 -7.961 -0.954 4.082 -0.885 CBL F5O 27 F5O CBM C28 C 0 1 Y N N -26.611 14.051 -7.463 -1.449 5.351 -1.147 CBM F5O 28 F5O CBN C29 C 0 1 Y N N -25.694 13.964 -6.429 -2.571 5.811 -0.472 CBN F5O 29 F5O CBO C30 C 0 1 Y N N -25.130 15.158 -5.887 -3.199 5.008 0.462 CBO F5O 30 F5O CBP C31 C 0 1 Y N N -25.501 16.417 -6.394 -2.717 3.741 0.726 CBP F5O 31 F5O CBR C32 C 0 1 N N N -26.731 11.621 -7.559 -1.398 7.439 -2.283 CBR F5O 32 F5O FBG F1 F 0 1 N N N -29.744 23.371 -8.416 -3.743 -3.102 -2.001 FBG F5O 33 F5O FBH F2 F 0 1 N N N -31.836 23.969 -8.813 -2.168 -4.427 -1.010 FBH F5O 34 F5O FBI F3 F 0 1 N N N -31.344 22.609 -7.115 -4.368 -5.040 -0.966 FBI F5O 35 F5O FBJ F4 F 0 1 N N N -30.344 18.273 -9.951 -2.317 -0.306 2.082 FBJ F5O 36 F5O FBS F5 F 0 1 N N N -27.900 15.404 -8.994 0.139 3.632 -1.540 FBS F5O 37 F5O NAG N1 N 0 1 N N N -24.384 20.211 -12.489 2.825 -0.767 0.213 NAG F5O 38 F5O NAQ N2 N 0 1 N N N -28.455 19.577 -8.332 -1.194 -0.432 0.144 NAQ F5O 39 F5O NAU N3 N 0 1 N N N -26.369 19.714 -9.360 0.585 0.473 1.382 NAU F5O 40 F5O OAE O1 O 0 1 N N N -23.966 24.320 -13.104 4.632 -2.133 -5.527 OAE F5O 41 F5O OAF O2 O 0 1 N N N -24.742 22.302 -13.281 3.262 -3.153 -4.126 OAF F5O 42 F5O OAV O3 O 0 1 N N N -24.717 17.979 -9.080 0.749 2.688 1.597 OAV F5O 43 F5O OAW O4 O 0 1 N N N -27.906 21.260 -9.583 0.327 -1.704 1.112 OAW F5O 44 F5O OBQ O5 O 0 1 N N N -27.210 12.875 -8.053 -0.834 6.144 -2.064 OBQ F5O 45 F5O H1 H1 H 0 1 N N N -21.712 23.260 -12.528 5.281 -1.141 -3.024 H1 F5O 46 F5O H2 H2 H 0 1 N N N -22.676 22.560 -11.184 3.919 -0.200 -3.677 H2 F5O 47 F5O H3 H3 H 0 1 N N N -22.215 21.080 -13.816 2.339 -1.541 -2.316 H3 F5O 48 F5O H4 H4 H 0 1 N N N -21.072 20.975 -12.434 3.701 -2.483 -1.663 H4 F5O 49 F5O H5 H5 H 0 1 N N N -22.642 19.046 -12.415 4.678 -0.411 -0.712 H5 F5O 50 F5O H6 H6 H 0 1 N N N -22.927 20.095 -10.985 3.316 0.530 -1.365 H6 F5O 51 F5O H7 H7 H 0 1 N N N -24.758 18.626 -11.225 3.144 1.222 0.810 H7 F5O 52 F5O H8 H8 H 0 1 N N N -24.448 20.595 -9.753 1.717 -0.695 2.706 H8 F5O 53 F5O H9 H9 H 0 1 N N N -25.832 21.433 -10.533 1.895 1.064 2.909 H9 F5O 54 F5O H10 H10 H 0 1 N N N -26.955 21.234 -12.854 3.845 -2.203 2.069 H10 F5O 55 F5O H11 H11 H 0 1 N N N -29.162 20.657 -13.819 5.854 -2.763 3.377 H11 F5O 56 F5O H12 H12 H 0 1 N N N -30.034 18.350 -13.664 7.381 -0.978 4.114 H12 F5O 57 F5O H13 H13 H 0 1 N N N -28.692 16.611 -12.531 6.900 1.368 3.540 H13 F5O 58 F5O H14 H14 H 0 1 N N N -26.493 17.178 -11.568 4.892 1.928 2.230 H14 F5O 59 F5O H15 H15 H 0 1 N N N -28.676 16.713 -6.511 -3.238 1.996 -1.015 H15 F5O 60 F5O H16 H16 H 0 1 N N N -29.394 18.280 -6.005 -2.756 0.578 -1.976 H16 F5O 61 F5O H17 H17 H 0 1 N N N -30.041 17.417 -7.441 -3.752 0.366 -0.517 H17 F5O 62 F5O H18 H18 H 0 1 N N N -29.629 21.093 -7.467 -1.150 -2.411 -0.549 H18 F5O 63 F5O H19 H19 H 0 1 N N N -30.336 19.443 -7.400 -2.380 -1.372 -1.308 H19 F5O 64 F5O H20 H20 H 0 1 N N N -31.874 18.926 -11.989 -4.133 -1.298 3.675 H20 F5O 65 F5O H21 H21 H 0 1 N N N -32.884 21.170 -12.320 -5.495 -3.293 3.202 H21 F5O 66 F5O H22 H22 H 0 1 N N N -32.461 22.965 -10.664 -5.194 -4.518 1.088 H22 F5O 67 F5O H23 H23 H 0 1 N N N -25.408 13.000 -6.036 -2.955 6.799 -0.678 H23 F5O 68 F5O H24 H24 H 0 1 N N N -24.413 15.095 -5.082 -4.071 5.372 0.984 H24 F5O 69 F5O H25 H25 H 0 1 N N N -25.066 17.317 -5.984 -3.214 3.115 1.453 H25 F5O 70 F5O H26 H26 H 0 1 N N N -27.252 10.800 -8.074 -2.426 7.333 -2.629 H26 F5O 71 F5O H27 H27 H 0 1 N N N -25.650 11.543 -7.745 -1.384 8.004 -1.351 H27 F5O 72 F5O H28 H28 H 0 1 N N N -26.923 11.556 -6.478 -0.813 7.967 -3.037 H28 F5O 73 F5O H29 H29 H 0 1 N N N -24.601 21.187 -12.524 1.849 -0.865 -0.020 H29 F5O 74 F5O H31 H31 H 0 1 N N N -24.810 24.487 -13.507 4.458 -2.832 -6.173 H31 F5O 75 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal F5O CAL CAM DOUB Y N 1 F5O CAL CAK SING Y N 2 F5O OAF CAA DOUB N N 3 F5O CAM CAN SING Y N 4 F5O OAE CAA SING N N 5 F5O CAA CAB SING N N 6 F5O CAK CAJ DOUB Y N 7 F5O CAC CAB SING N N 8 F5O CAC CAD SING N N 9 F5O CAN CAO DOUB Y N 10 F5O NAG CAD SING N N 11 F5O NAG CAH SING N N 12 F5O CAJ CAO SING Y N 13 F5O CAJ CAH SING N N 14 F5O CAH CAI SING N N 15 F5O CBC CBB DOUB Y N 16 F5O CBC CBD SING Y N 17 F5O CBB CBA SING Y N 18 F5O CBD CBE DOUB Y N 19 F5O CAI NAU SING N N 20 F5O CBA FBJ SING N N 21 F5O CBA CAZ DOUB Y N 22 F5O OAW CAP DOUB N N 23 F5O CBE CAZ SING Y N 24 F5O CBE CBF SING N N 25 F5O NAU CAP SING N N 26 F5O NAU CAT SING N N 27 F5O CAZ CAY SING N N 28 F5O CAP NAQ SING N N 29 F5O OAV CAT DOUB N N 30 F5O FBS CBL SING N N 31 F5O CAT CAS SING N N 32 F5O FBH CBF SING N N 33 F5O FBG CBF SING N N 34 F5O CBF FBI SING N N 35 F5O NAQ CAY SING N N 36 F5O NAQ CAR SING N N 37 F5O OBQ CBR SING N N 38 F5O OBQ CBM SING N N 39 F5O CAS CAR DOUB N N 40 F5O CAS CBK SING N N 41 F5O CBL CBM DOUB Y N 42 F5O CBL CBK SING Y N 43 F5O CAR CAX SING N N 44 F5O CBM CBN SING Y N 45 F5O CBK CBP DOUB Y N 46 F5O CBN CBO DOUB Y N 47 F5O CBP CBO SING Y N 48 F5O CAB H1 SING N N 49 F5O CAB H2 SING N N 50 F5O CAC H3 SING N N 51 F5O CAC H4 SING N N 52 F5O CAD H5 SING N N 53 F5O CAD H6 SING N N 54 F5O CAH H7 SING N N 55 F5O CAI H8 SING N N 56 F5O CAI H9 SING N N 57 F5O CAK H10 SING N N 58 F5O CAL H11 SING N N 59 F5O CAM H12 SING N N 60 F5O CAN H13 SING N N 61 F5O CAO H14 SING N N 62 F5O CAX H15 SING N N 63 F5O CAX H16 SING N N 64 F5O CAX H17 SING N N 65 F5O CAY H18 SING N N 66 F5O CAY H19 SING N N 67 F5O CBB H20 SING N N 68 F5O CBC H21 SING N N 69 F5O CBD H22 SING N N 70 F5O CBN H23 SING N N 71 F5O CBO H24 SING N N 72 F5O CBP H25 SING N N 73 F5O CBR H26 SING N N 74 F5O CBR H27 SING N N 75 F5O CBR H28 SING N N 76 F5O NAG H29 SING N N 77 F5O OAE H31 SING N N 78 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor F5O InChI InChI 1.03 "InChI=1S/C32H30F5N3O5/c1-19-28(21-11-6-14-26(45-2)29(21)34)30(43)40(18-25(20-9-4-3-5-10-20)38-16-8-15-27(41)42)31(44)39(19)17-22-23(32(35,36)37)12-7-13-24(22)33/h3-7,9-14,25,38H,8,15-18H2,1-2H3,(H,41,42)/t25-/m0/s1" F5O InChIKey InChI 1.03 HEAUOKZIVMZVQL-VWLOTQADSA-N F5O SMILES_CANONICAL CACTVS 3.385 "COc1cccc(c1F)C2=C(C)N(Cc3c(F)cccc3C(F)(F)F)C(=O)N(C[C@H](NCCCC(O)=O)c4ccccc4)C2=O" F5O SMILES CACTVS 3.385 "COc1cccc(c1F)C2=C(C)N(Cc3c(F)cccc3C(F)(F)F)C(=O)N(C[CH](NCCCC(O)=O)c4ccccc4)C2=O" F5O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(C(=O)N(C(=O)N1Cc2c(cccc2F)C(F)(F)F)C[C@@H](c3ccccc3)NCCCC(=O)O)c4cccc(c4F)OC" F5O SMILES "OpenEye OEToolkits" 2.0.7 "CC1=C(C(=O)N(C(=O)N1Cc2c(cccc2F)C(F)(F)F)CC(c3ccccc3)NCCCC(=O)O)c4cccc(c4F)OC" # _pdbx_chem_comp_identifier.comp_id F5O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[[(1~{R})-2-[5-(2-fluoranyl-3-methoxy-phenyl)-3-[[2-fluoranyl-6-(trifluoromethyl)phenyl]methyl]-4-methyl-2,6-bis(oxidanylidene)pyrimidin-1-yl]-1-phenyl-ethyl]amino]butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site F5O "Create component" 2020-03-31 PDBJ F5O "Initial release" 2020-10-07 RCSB ##