data_F9D # _chem_comp.id F9D _chem_comp.name "(2R)-2-aminopent-4-ynoic acid" _chem_comp.type "D-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H7 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-03-16 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 113.115 _chem_comp.one_letter_code ? _chem_comp.three_letter_code F9D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6CNU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal F9D C C1 C 0 1 N N N Y N Y 18.972 1.939 79.819 1.473 0.120 0.042 C F9D 1 F9D O O1 O 0 1 N N N Y N Y 19.210 1.040 80.616 2.115 -0.706 -0.562 O F9D 2 F9D CA C2 C 0 1 N N R Y N N 20.070 2.329 78.855 0.034 -0.156 0.396 CA F9D 3 F9D N N1 N 0 1 N N N Y Y N 19.790 3.594 78.173 -0.214 -1.603 0.346 N F9D 4 F9D CB C3 C 0 1 N N N N N N 20.292 1.210 77.847 -0.882 0.554 -0.603 CB F9D 5 F9D CG C4 C 0 1 N N N N N N 19.166 1.066 76.947 -2.284 0.385 -0.189 CG F9D 6 F9D CD C5 C 0 1 N N N N N N 18.181 0.906 76.185 -3.403 0.250 0.142 CD F9D 7 F9D HA H2 H 0 1 N N N Y N N 20.998 2.445 79.433 -0.170 0.213 1.401 HA F9D 8 F9D H H3 H 0 1 N N N Y Y N 19.648 4.315 78.852 -0.032 -1.969 -0.576 H F9D 9 F9D H2 H4 H 0 1 N Y N Y Y N 20.564 3.836 77.588 0.332 -2.088 1.042 H2 F9D 10 F9D HB2 H6 H 0 1 N N N N N N 20.437 0.265 78.390 -0.637 1.615 -0.630 HB2 F9D 11 F9D HB3 H7 H 0 1 N N N N N N 21.193 1.435 77.257 -0.742 0.123 -1.594 HB3 F9D 12 F9D HG H8 H 0 1 N N N N N N 17.349 0.771 75.542 -4.403 0.130 0.438 HG F9D 13 F9D OXT OXT O 0 1 N Y N Y N Y 17.875 2.523 79.938 2.042 1.280 0.403 OXT F9D 14 F9D HXT H1 H 0 1 N Y N Y N Y 17.393 2.147 80.665 2.969 1.410 0.157 HXT F9D 15 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal F9D CD CG TRIP N N 1 F9D CG CB SING N N 2 F9D CB CA SING N N 3 F9D N CA SING N N 4 F9D CA C SING N N 5 F9D C O DOUB N N 6 F9D CA HA SING N N 7 F9D N H SING N N 8 F9D N H2 SING N N 9 F9D CB HB2 SING N N 10 F9D CB HB3 SING N N 11 F9D CD HG SING N N 12 F9D C OXT SING N N 13 F9D OXT HXT SING N N 14 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor F9D SMILES ACDLabs 12.01 "C(=O)(O)C(N)CC#C" F9D InChI InChI 1.03 "InChI=1S/C5H7NO2/c1-2-3-4(6)5(7)8/h1,4H,3,6H2,(H,7,8)/t4-/m1/s1" F9D InChIKey InChI 1.03 DGYHPLMPMRKMPD-SCSAIBSYSA-N F9D SMILES_CANONICAL CACTVS 3.385 "N[C@H](CC#C)C(O)=O" F9D SMILES CACTVS 3.385 "N[CH](CC#C)C(O)=O" F9D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C#CC[C@H](C(=O)O)N" F9D SMILES "OpenEye OEToolkits" 2.0.6 "C#CCC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier F9D "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-2-aminopent-4-ynoic acid" F9D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R})-2-azanylpent-4-ynoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site F9D "Create component" 2018-03-16 RCSB F9D "Initial release" 2019-03-06 RCSB F9D "Modify backbone" 2023-11-03 PDBE #