data_F9X # _chem_comp.id F9X _chem_comp.name "(2S,3R)-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-oxidanyl-pentanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H21 N2 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-04-22 _chem_comp.pdbx_modified_date 2021-04-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 364.288 _chem_comp.one_letter_code ? _chem_comp.three_letter_code F9X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7BXR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal F9X P P1 P 0 1 N N N -7.291 -2.295 15.508 -3.961 -1.213 0.275 P F9X 1 F9X O1P O1 O 0 1 N N N -8.359 -1.243 15.582 -4.289 -1.685 -1.229 O1P F9X 2 F9X O2P O2 O 0 1 N N N -7.852 -3.604 15.020 -5.332 -0.827 1.026 O2P F9X 3 F9X O3P O3 O 0 1 N N N -6.139 -1.807 14.655 -3.293 -2.314 1.003 O3P F9X 4 F9X N1 N1 N 0 1 Y N N -4.768 -4.174 20.485 -1.203 3.647 0.464 N1 F9X 5 F9X CA C1 C 0 1 N N S -10.217 -0.876 21.324 2.619 -1.321 -0.638 CA F9X 6 F9X C C2 C 0 1 N N N -10.306 0.500 21.878 1.761 -2.555 -0.750 C F9X 7 F9X O O4 O 0 1 N N N -11.338 1.178 21.641 0.599 -2.515 -0.420 O F9X 8 F9X CB C3 C 0 1 N N R -11.068 -1.785 22.202 3.792 -1.598 0.304 CB F9X 9 F9X CG C4 C 0 1 N N N -12.516 -1.857 21.724 4.591 -0.311 0.516 CG F9X 10 F9X N N2 N 0 1 N N N -8.806 -1.318 21.278 1.815 -0.212 -0.105 N F9X 11 F9X OB O5 O 0 1 N N N -10.477 -3.080 22.223 3.294 -2.062 1.561 OB F9X 12 F9X CD C5 C 0 1 N N N -13.459 -1.430 22.825 5.834 -0.615 1.356 CD F9X 13 F9X C2 C6 C 0 1 Y N N -5.211 -3.461 21.549 0.030 3.888 0.066 C2 F9X 14 F9X C2A C7 C 0 1 N N N -4.417 -3.462 22.838 0.600 5.276 0.202 C2A F9X 15 F9X C3 C8 C 0 1 Y N N -6.474 -2.682 21.461 0.810 2.876 -0.477 C3 F9X 16 F9X C4 C9 C 0 1 Y N N -7.203 -2.740 20.175 0.271 1.599 -0.597 C4 F9X 17 F9X C4A C10 C 0 1 N N N -8.492 -1.986 20.005 1.082 0.471 -1.180 C4A F9X 18 F9X C5 C11 C 0 1 Y N N -6.605 -3.566 19.089 -1.029 1.390 -0.166 C5 F9X 19 F9X C5A C12 C 0 1 N N N -7.244 -3.665 17.743 -1.657 0.024 -0.274 C5A F9X 20 F9X C6 C13 C 0 1 Y N N -5.408 -4.238 19.303 -1.743 2.447 0.364 C6 F9X 21 F9X O3 O6 O 0 1 N N N -6.939 -1.963 22.532 2.081 3.129 -0.886 O3 F9X 22 F9X O4P O7 O 0 1 N N N -6.745 -2.552 17.003 -2.992 0.072 0.235 O4P F9X 23 F9X OT O8 O 0 1 N N N -9.340 0.868 22.578 2.287 -3.698 -1.216 OT F9X 24 F9X H1 H1 H 0 1 N N N -8.092 -0.484 15.077 -4.729 -1.011 -1.766 H1 F9X 25 F9X H2 H2 H 0 1 N N N -7.371 -3.889 14.252 -5.965 -1.555 1.087 H2 F9X 26 F9X H3 H3 H 0 1 N N N -10.632 -0.882 20.305 3.000 -1.052 -1.623 H3 F9X 27 F9X H4 H4 H 0 1 N N N -11.068 -1.370 23.221 4.437 -2.359 -0.134 H4 F9X 28 F9X H5 H5 H 0 1 N N N -12.645 -1.191 20.858 4.896 0.090 -0.450 H5 F9X 29 F9X H6 H6 H 0 1 N N N -12.749 -2.891 21.429 3.972 0.420 1.035 H6 F9X 30 F9X H7 H7 H 0 1 N N N -8.641 -1.957 22.030 2.390 0.437 0.409 H7 F9X 31 F9X H9 H9 H 0 1 N N N -10.998 -3.658 22.768 2.711 -1.434 2.009 H9 F9X 32 F9X H10 H10 H 0 1 N N N -14.496 -1.488 22.463 6.403 0.301 1.507 H10 F9X 33 F9X H11 H11 H 0 1 N N N -13.335 -2.096 23.692 5.529 -1.017 2.323 H11 F9X 34 F9X H12 H12 H 0 1 N N N -13.232 -0.395 23.122 6.453 -1.347 0.837 H12 F9X 35 F9X H13 H13 H 0 1 N N N -3.523 -4.091 22.718 1.086 5.376 1.172 H13 F9X 36 F9X H14 H14 H 0 1 N N N -4.112 -2.434 23.081 1.329 5.449 -0.590 H14 F9X 37 F9X H15 H15 H 0 1 N N N -5.040 -3.862 23.652 -0.204 6.008 0.121 H15 F9X 38 F9X H16 H16 H 0 1 N N N -8.382 -1.236 19.208 1.791 0.870 -1.906 H16 F9X 39 F9X H17 H17 H 0 1 N N N -9.300 -2.685 19.742 0.417 -0.238 -1.674 H17 F9X 40 F9X H18 H18 H 0 1 N N N -8.339 -3.608 17.832 -1.678 -0.285 -1.319 H18 F9X 41 F9X H19 H19 H 0 1 N N N -6.964 -4.609 17.253 -1.073 -0.691 0.305 H19 F9X 42 F9X H20 H20 H 0 1 N N N -4.982 -4.825 18.503 -2.757 2.290 0.702 H20 F9X 43 F9X H21 H21 H 0 1 N N N -6.334 -2.051 23.259 2.748 3.001 -0.199 H21 F9X 44 F9X H22 H22 H 0 1 N N N -9.503 1.744 22.907 1.698 -4.463 -1.270 H22 F9X 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal F9X O3P P DOUB N N 1 F9X O2P P SING N N 2 F9X P O1P SING N N 3 F9X P O4P SING N N 4 F9X O4P C5A SING N N 5 F9X C5A C5 SING N N 6 F9X C5 C6 DOUB Y N 7 F9X C5 C4 SING Y N 8 F9X C6 N1 SING Y N 9 F9X C4A C4 SING N N 10 F9X C4A N SING N N 11 F9X C4 C3 DOUB Y N 12 F9X N1 C2 DOUB Y N 13 F9X N CA SING N N 14 F9X CA C SING N N 15 F9X CA CB SING N N 16 F9X C3 C2 SING Y N 17 F9X C3 O3 SING N N 18 F9X C2 C2A SING N N 19 F9X O C DOUB N N 20 F9X CG CB SING N N 21 F9X CG CD SING N N 22 F9X C OT SING N N 23 F9X CB OB SING N N 24 F9X O1P H1 SING N N 25 F9X O2P H2 SING N N 26 F9X CA H3 SING N N 27 F9X CB H4 SING N N 28 F9X CG H5 SING N N 29 F9X CG H6 SING N N 30 F9X N H7 SING N N 31 F9X OB H9 SING N N 32 F9X CD H10 SING N N 33 F9X CD H11 SING N N 34 F9X CD H12 SING N N 35 F9X C2A H13 SING N N 36 F9X C2A H14 SING N N 37 F9X C2A H15 SING N N 38 F9X C4A H16 SING N N 39 F9X C4A H17 SING N N 40 F9X C5A H18 SING N N 41 F9X C5A H19 SING N N 42 F9X C6 H20 SING N N 43 F9X O3 H21 SING N N 44 F9X OT H22 SING N N 45 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor F9X InChI InChI 1.03 "InChI=1S/C13H21N2O8P/c1-3-10(16)11(13(18)19)15-5-9-8(6-23-24(20,21)22)4-14-7(2)12(9)17/h4,10-11,15-17H,3,5-6H2,1-2H3,(H,18,19)(H2,20,21,22)/t10-,11+/m1/s1" F9X InChIKey InChI 1.03 BXUMTZWSUSTQMU-MNOVXSKESA-N F9X SMILES_CANONICAL CACTVS 3.385 "CC[C@@H](O)[C@H](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O" F9X SMILES CACTVS 3.385 "CC[CH](O)[CH](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O" F9X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H]([C@@H](C(=O)O)NCc1c(cnc(c1O)C)COP(=O)(O)O)O" F9X SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C(C(=O)O)NCc1c(cnc(c1O)C)COP(=O)(O)O)O" # _pdbx_chem_comp_identifier.comp_id F9X _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{R})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-oxidanyl-pentanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site F9X "Create component" 2020-04-22 PDBJ F9X "Initial release" 2021-04-21 RCSB ##