data_FAG # _chem_comp.id FAG _chem_comp.name ;[1',2'-DIDEOXY[2-AMINO-5-([9-HYDROXY-AFLATOXINB2-8-YL]-FORMYL-AMINO)-6-OXO-1,6-IHYDRO-PYRIMIDIN-4-YLAMINO]-RIBOFURANOSE]-5-MONOPHOSPHATE GROUP ; _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C27 H28 N5 O15 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 693.509 _chem_comp.one_letter_code N _chem_comp.three_letter_code FAG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1HM1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal FAG C3A C3A C 0 1 N N N 1.990 3.386 0.495 9.374 4.011 -0.783 C3A FAG 1 FAG C3 C3 C 0 1 N N N 2.858 3.456 -0.705 10.857 3.985 -0.613 C3 FAG 2 FAG C2A C2A C 0 1 N N N 4.284 3.252 -0.119 11.185 5.330 0.032 C2A FAG 3 FAG C1 C1 C 0 1 N N N 4.081 3.069 1.411 9.838 5.983 0.169 C1 FAG 4 FAG O1 O1 O 0 1 N N N 4.959 2.882 2.207 9.646 7.090 0.650 O1 FAG 5 FAG P P P 0 1 N N N -8.665 4.503 0.733 7.026 2.254 3.364 P FAG 6 FAG O1P O1P O 0 1 N N N -10.070 4.493 0.268 6.524 3.358 4.248 O1P FAG 7 FAG O2P O2P O 0 1 N N N -8.355 4.300 2.167 6.180 2.017 2.006 O2P FAG 8 FAG "O5'" O5* O 0 1 N N N -7.843 3.428 -0.117 7.064 0.789 4.053 "O5'" FAG 9 FAG "C5'" C5* C 0 1 N N N -7.411 3.795 -1.422 7.526 -0.308 3.282 "C5'" FAG 10 FAG "C4'" C4* C 0 1 N N R -7.200 2.608 -2.319 6.827 -1.574 3.760 "C4'" FAG 11 FAG "O4'" O4* O 0 1 N N N -5.820 2.201 -2.252 5.414 -1.414 3.527 "O4'" FAG 12 FAG "C1'" C1* C 0 1 N N R -5.736 1.005 -1.458 5.012 -2.269 2.448 "C1'" FAG 13 FAG N9 N9 N 0 1 N N N -4.700 1.125 -0.439 4.225 -1.517 1.515 N9 FAG 14 FAG C4 C4 C 0 1 N N N -3.388 1.409 -0.722 3.671 -2.139 0.416 C4 FAG 15 FAG N3 N3 N 0 1 N N N -2.947 1.695 -1.978 3.894 -3.498 0.241 N3 FAG 16 FAG C2 C2 C 0 1 N N N -1.643 1.472 -2.137 3.382 -4.109 -0.788 C2 FAG 17 FAG N2 N2 N 0 1 N N N -1.070 1.651 -3.326 3.567 -5.448 -1.014 N2 FAG 18 FAG N1 N1 N 0 1 N N N -0.827 1.025 -1.135 2.614 -3.444 -1.725 N1 FAG 19 FAG C6 C6 C 0 1 N N N -1.227 0.762 0.158 2.330 -2.099 -1.650 C6 FAG 20 FAG O6 O6 O 0 1 N N N -0.406 0.378 0.984 1.651 -1.493 -2.473 O6 FAG 21 FAG C5 C5 C 0 1 N N N -2.617 0.986 0.353 2.927 -1.426 -0.465 C5 FAG 22 FAG N7 N7 N 0 1 N N N -3.052 0.875 1.675 2.672 -0.074 -0.343 N7 FAG 23 FAG C8 C8 C 0 1 N N N -3.698 -0.333 1.840 2.004 0.396 0.791 C8 FAG 24 FAG O8 O8 O 0 1 N N N -3.123 -1.366 1.639 1.708 1.560 1.039 O8 FAG 25 FAG "C2'" C2* C 0 1 N N N -7.107 0.797 -0.860 6.276 -2.840 1.827 "C2'" FAG 26 FAG "C3'" C3* C 0 1 N N S -8.033 1.467 -1.820 7.249 -2.813 2.983 "C3'" FAG 27 FAG "O3'" O3* O 0 1 N N N -8.467 0.618 -2.906 7.070 -3.975 3.789 "O3'" FAG 28 FAG C8A C8A C 0 1 N N R -3.559 1.763 2.596 3.098 0.818 -1.383 C8A FAG 29 FAG C9 C9 C 0 1 N N R -2.647 2.490 3.641 4.143 1.807 -0.901 C9 FAG 30 FAG O9 O9 O 0 1 N N N -3.330 2.913 4.803 3.543 2.982 -0.385 O9 FAG 31 FAG C9A C9A C 0 1 N N R -2.447 3.661 2.636 4.917 2.110 -2.167 C9A FAG 32 FAG C9B C9B C 0 1 Y N N -1.406 3.631 1.619 6.385 2.156 -1.995 C9B FAG 33 FAG O7 O7 O 0 1 N N N -4.299 3.006 2.547 3.707 0.056 -2.429 O7 FAG 34 FAG C6A C6A C 0 1 N N S -3.627 3.939 2.024 4.786 0.821 -2.987 C6A FAG 35 FAG O6A O6A O 0 1 N N N -3.422 3.975 0.660 6.033 0.085 -2.950 O6A FAG 36 FAG C5M C5M C 0 1 Y N N -2.055 3.859 0.498 6.947 0.978 -2.455 C5M FAG 37 FAG C5B C5B C 0 1 Y N N -1.476 3.895 -0.679 8.308 0.740 -2.384 C5B FAG 38 FAG C4B C4B C 0 1 Y N N -0.085 3.760 -0.724 9.127 1.734 -1.837 C4B FAG 39 FAG O4 O4 O 0 1 N N N 0.605 3.846 -1.886 10.464 1.465 -1.795 O4 FAG 40 FAG CM CM C 0 1 N N N 0.003 4.273 -3.100 10.958 0.824 -0.621 CM FAG 41 FAG C4A C4A C 0 1 Y N N 0.628 3.530 0.476 8.578 2.940 -1.366 C4A FAG 42 FAG CAA AC10 C 0 1 Y N N -0.061 3.462 1.674 7.194 3.136 -1.451 CAA FAG 43 FAG O10 O10 O 0 1 N N N 0.598 3.246 2.858 6.587 4.322 -0.986 O10 FAG 44 FAG C11 C11 C 0 1 N N N 2.003 3.088 2.898 7.329 5.359 -0.421 C11 FAG 45 FAG O11 O11 O 0 1 N N N 2.508 2.900 3.970 6.810 6.390 -0.013 O11 FAG 46 FAG CBA AC11 C 0 1 N N N 2.676 3.174 1.634 8.769 5.120 -0.354 CBA FAG 47 FAG H31 1H3 H 0 1 N N N 2.740 4.424 -1.203 11.172 3.160 0.035 H31 FAG 48 FAG H32 2H3 H 0 1 N N N 2.613 2.649 -1.392 11.371 3.883 -1.575 H32 FAG 49 FAG H2A1 1H2A H 0 0 N N N 4.928 4.136 -0.299 11.831 5.935 -0.610 H2A1 FAG 50 FAG H2A2 2H2A H 0 0 N N N 4.740 2.350 -0.547 11.642 5.201 1.018 H2A2 FAG 51 FAG HOP2 2HOP H 0 0 N N N -7.453 4.306 2.465 5.963 2.790 1.442 HOP2 FAG 52 FAG "H5'1" 1H5* H 0 0 N N N -6.478 4.344 -1.331 7.299 -0.123 2.229 "H5'1" FAG 53 FAG "H5'2" 2H5* H 0 0 N N N -8.172 4.418 -1.866 8.607 -0.401 3.409 "H5'2" FAG 54 FAG "H4'" H4* H 0 1 N N N -7.466 2.855 -3.345 6.980 -1.690 4.837 "H4'" FAG 55 FAG "H1'" H1* H 0 1 N N N -5.488 0.168 -2.109 4.400 -3.069 2.878 "H1'" FAG 56 FAG HN9 HN9 H 0 1 N N N -4.992 1.168 0.525 4.044 -0.552 1.603 HN9 FAG 57 FAG HN21 1HN2 H 0 0 N N N -1.623 1.957 -4.113 3.846 -6.021 -0.251 HN21 FAG 58 FAG HN22 2HN2 H 0 0 N N N -0.082 1.475 -3.438 3.415 -5.797 -1.932 HN22 FAG 59 FAG H1 H1 H 0 1 N N N 0.148 0.867 -1.333 2.241 -3.973 -2.507 H1 FAG 60 FAG H8 H8 H 0 1 N N N -4.729 -0.320 2.170 1.742 -0.408 1.499 H8 FAG 61 FAG "H2'1" 1H2* H 0 0 N N N -7.161 1.271 0.113 6.638 -2.189 1.022 "H2'1" FAG 62 FAG "H2'2" 2H2* H 0 0 N N N -7.345 -0.239 -0.783 6.106 -3.838 1.411 "H2'2" FAG 63 FAG "H3'" H3* H 0 1 N N N -8.889 1.869 -1.284 8.295 -2.793 2.666 "H3'" FAG 64 FAG "HO3'" *HO3 H 0 0 N N N -8.995 -0.105 -2.589 6.113 -4.147 3.839 "HO3'" FAG 65 FAG H8A H8A H 0 1 N N N -4.269 1.264 3.204 2.204 1.314 -1.776 H8A FAG 66 FAG H9 H9 H 0 1 N N N -1.711 1.950 3.822 4.778 1.375 -0.118 H9 FAG 67 FAG HO9 HO9 H 0 1 N N N -2.774 3.540 5.271 2.840 2.691 0.215 HO9 FAG 68 FAG H9A H9A H 0 1 N N N -2.201 4.511 3.243 4.532 2.979 -2.712 H9A FAG 69 FAG H6A H6A H 0 1 N N N -3.976 4.877 2.374 4.553 1.032 -4.037 H6A FAG 70 FAG H5B H5B H 0 1 N N N -2.094 4.078 -1.524 8.738 -0.190 -2.739 H5B FAG 71 FAG HM1 1HM H 0 1 N N N 0.557 3.858 -3.945 11.057 -0.248 -0.805 HM1 FAG 72 FAG HM2 2HM H 0 1 N N N 0.025 5.360 -3.158 10.269 1.001 0.209 HM2 FAG 73 FAG HM3 3HM H 0 1 N N N -1.029 3.930 -3.145 11.937 1.241 -0.374 HM3 FAG 74 FAG O3P O3P O 0 1 N Y N ? ? ? 8.541 2.441 2.831 O3P FAG 75 FAG HOP3 3HOP H 0 0 N N N ? ? ? 8.806 3.304 2.447 HOP3 FAG 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal FAG C3A C3 SING N N 1 FAG C3A C4A SING N N 2 FAG C3A CBA DOUB N N 3 FAG C3 C2A SING N N 4 FAG C3 H31 SING N N 5 FAG C3 H32 SING N N 6 FAG C2A C1 SING N N 7 FAG C2A H2A1 SING N N 8 FAG C2A H2A2 SING N N 9 FAG C1 O1 DOUB N N 10 FAG C1 CBA SING N N 11 FAG P O1P DOUB N N 12 FAG P O2P SING N N 13 FAG P "O5'" SING N N 14 FAG O2P HOP2 SING N N 15 FAG "O5'" "C5'" SING N N 16 FAG "C5'" "C4'" SING N N 17 FAG "C5'" "H5'1" SING N N 18 FAG "C5'" "H5'2" SING N N 19 FAG "C4'" "O4'" SING N N 20 FAG "C4'" "C3'" SING N N 21 FAG "C4'" "H4'" SING N N 22 FAG "O4'" "C1'" SING N N 23 FAG "C1'" N9 SING N N 24 FAG "C1'" "C2'" SING N N 25 FAG "C1'" "H1'" SING N N 26 FAG N9 C4 SING N N 27 FAG N9 HN9 SING N N 28 FAG C4 N3 SING N N 29 FAG C4 C5 DOUB N N 30 FAG N3 C2 DOUB N N 31 FAG C2 N2 SING N N 32 FAG C2 N1 SING N N 33 FAG N2 HN21 SING N N 34 FAG N2 HN22 SING N N 35 FAG N1 C6 SING N N 36 FAG N1 H1 SING N N 37 FAG C6 O6 DOUB N N 38 FAG C6 C5 SING N N 39 FAG C5 N7 SING N N 40 FAG N7 C8 SING N N 41 FAG N7 C8A SING N N 42 FAG C8 O8 DOUB N N 43 FAG C8 H8 SING N N 44 FAG "C2'" "C3'" SING N N 45 FAG "C2'" "H2'1" SING N N 46 FAG "C2'" "H2'2" SING N N 47 FAG "C3'" "O3'" SING N N 48 FAG "C3'" "H3'" SING N N 49 FAG "O3'" "HO3'" SING N N 50 FAG C8A C9 SING N N 51 FAG C8A O7 SING N N 52 FAG C8A H8A SING N N 53 FAG C9 O9 SING N N 54 FAG C9 C9A SING N N 55 FAG C9 H9 SING N N 56 FAG O9 HO9 SING N N 57 FAG C9A C9B SING N N 58 FAG C9A C6A SING N N 59 FAG C9A H9A SING N N 60 FAG C9B C5M DOUB Y N 61 FAG C9B CAA SING Y N 62 FAG O7 C6A SING N N 63 FAG C6A O6A SING N N 64 FAG C6A H6A SING N N 65 FAG O6A C5M SING N N 66 FAG C5M C5B SING Y N 67 FAG C5B C4B DOUB Y N 68 FAG C5B H5B SING N N 69 FAG C4B O4 SING N N 70 FAG C4B C4A SING Y N 71 FAG O4 CM SING N N 72 FAG CM HM1 SING N N 73 FAG CM HM2 SING N N 74 FAG CM HM3 SING N N 75 FAG C4A CAA DOUB Y N 76 FAG CAA O10 SING N N 77 FAG O10 C11 SING N N 78 FAG C11 O11 DOUB N N 79 FAG C11 CBA SING N N 80 FAG P O3P SING N N 81 FAG O3P HOP3 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor FAG SMILES ACDLabs 10.04 "O=P(O)(O)OCC7OC(NC=1N=C(N)NC(=O)C=1N(C=O)C5OC6Oc4cc(OC)c3c(OC(=O)C=2C(=O)CCC=23)c4C6C5O)CC7O" FAG SMILES_CANONICAL CACTVS 3.341 "COc1cc2O[C@H]3O[C@H]([C@H](O)[C@H]3c2c4OC(=O)C5=C(CCC5=O)c14)N(C=O)C6=C(N[C@H]7C[C@H](O)[C@@H](CO[P](O)(O)=O)O7)N=C(N)NC6=O" FAG SMILES CACTVS 3.341 "COc1cc2O[CH]3O[CH]([CH](O)[CH]3c2c4OC(=O)C5=C(CCC5=O)c14)N(C=O)C6=C(N[CH]7C[CH](O)[CH](CO[P](O)(O)=O)O7)N=C(N)NC6=O" FAG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "COc1cc2c(c3c1C4=C(C(=O)CC4)C(=O)O3)[C@@H]5[C@H]([C@@H](O[C@@H]5O2)N(C=O)C6=C(N=C(NC6=O)N)N[C@H]7C[C@@H]([C@H](O7)COP(=O)(O)O)O)O" FAG SMILES "OpenEye OEToolkits" 1.5.0 "COc1cc2c(c3c1C4=C(C(=O)CC4)C(=O)O3)C5C(C(OC5O2)N(C=O)C6=C(N=C(NC6=O)N)NC7CC(C(O7)COP(=O)(O)O)O)O" FAG InChI InChI 1.03 ;InChI=1S/C27H28N5O15P/c1-42-11-5-12-17(21-16(11)8-2-3-9(34)15(8)25(38)46-21)18-20(36)24(47-26(18)45-12)32(7-33)19-22(30-27(28)31-23(19)37)29-14-4-10(35)13(44-14)6-43-48(39,40)41/h5,7,10,13-14,18,20,24,26,35-36H,2-4,6H2,1H3,(H2,39,40,41)(H4,28,29,30,31,37)/t10-,13+,14+,18+,20+,24+,26-/m0/s1 ; FAG InChIKey InChI 1.03 ATYDIVLPRYGUHN-MHRKVAGWSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FAG "SYSTEMATIC NAME" ACDLabs 10.04 "N-(2-amino-5-{formyl[(6aS,8R,9R,9aR)-9-hydroxy-4-methoxy-1,11-dioxo-1,2,3,6a,8,9,9a,11-octahydrocyclopenta[c]furo[3',2':4,5]furo[2,3-h]chromen-8-yl]amino}-6-oxo-1,6-dihydropyrimidin-4-yl)-2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosylamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site FAG "Create component" 1999-07-08 RCSB FAG "Modify aromatic_flag" 2011-06-04 RCSB FAG "Modify descriptor" 2011-06-04 RCSB #