data_FDG # _chem_comp.id FDG _chem_comp.name "2-amino-9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-7,9-dihydro-1H-purine-6,8-dione" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H13 F N5 O8 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-01-06 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 381.211 _chem_comp.one_letter_code ? _chem_comp.three_letter_code FDG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3KTU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal FDG P P P 0 1 N N N 26.641 23.995 37.251 4.954 -1.240 -0.031 P FDG 1 FDG N1 N1 N 0 1 N N N 20.043 24.174 30.131 -5.318 -1.235 -0.469 N1 FDG 2 FDG C2 C2 C 0 1 N N N 20.330 25.382 30.875 -4.601 -0.850 -1.560 C2 FDG 3 FDG N2 N2 N 0 1 N N N 20.262 26.599 30.301 -5.158 -0.982 -2.807 N2 FDG 4 FDG N3 N3 N 0 1 N N N 20.675 25.268 32.167 -3.386 -0.357 -1.450 N3 FDG 5 FDG C4 C4 C 0 1 N N N 20.765 24.086 32.804 -2.805 -0.212 -0.254 C4 FDG 6 FDG C5 C5 C 0 1 N N N 20.501 22.853 32.154 -3.494 -0.589 0.893 C5 FDG 7 FDG C6 C6 C 0 1 N N N 20.137 22.898 30.800 -4.788 -1.114 0.768 C6 FDG 8 FDG O6 O6 O 0 1 N N N 19.902 21.835 30.170 -5.421 -1.455 1.755 O6 FDG 9 FDG N7 N7 N 0 1 N N N 20.690 21.859 33.074 -2.653 -0.327 1.978 N7 FDG 10 FDG C8 C8 C 0 1 N N N 21.061 22.498 34.225 -1.504 0.186 1.496 C8 FDG 11 FDG O8 O8 O 0 1 N N N 21.334 21.902 35.289 -0.549 0.527 2.169 O8 FDG 12 FDG N9 N9 N 0 1 N N N 21.101 23.825 34.051 -1.576 0.264 0.154 N9 FDG 13 FDG "C1'" "C1'" C 0 1 N N R 21.466 24.879 34.994 -0.522 0.770 -0.729 "C1'" FDG 14 FDG "C2'" "C2'" C 0 1 N N S 20.804 25.041 36.343 -0.290 2.270 -0.462 "C2'" FDG 15 FDG "F2'" "F2'" F 0 1 N N N 20.692 23.724 36.873 -1.103 2.712 0.588 "F2'" FDG 16 FDG "C3'" "C3'" C 0 1 N N R 21.827 25.900 37.072 1.203 2.358 -0.065 "C3'" FDG 17 FDG "O3'" "O3'" O 0 1 N N N 21.544 27.318 36.796 1.822 3.502 -0.658 "O3'" FDG 18 FDG "C4'" "C4'" C 0 1 N N R 23.157 25.485 36.437 1.776 1.048 -0.662 "C4'" FDG 19 FDG "O4'" "O4'" O 0 1 N N N 22.765 24.504 35.468 0.714 0.091 -0.454 "O4'" FDG 20 FDG "C5'" "C5'" C 0 1 N N N 24.166 24.885 37.386 3.040 0.621 0.088 "C5'" FDG 21 FDG "O5'" "O5'" O 0 1 N N N 25.220 24.335 36.593 3.611 -0.521 -0.553 "O5'" FDG 22 FDG OP1 OP1 O 0 1 N N N 26.783 22.543 37.515 4.791 -1.616 1.391 OP1 FDG 23 FDG OP3 OP3 O 0 1 N Y N 27.724 24.722 36.543 5.231 -2.562 -0.908 OP3 FDG 24 FDG HN1 HN1 H 0 1 N N N 19.783 24.223 29.167 -6.213 -1.592 -0.579 HN1 FDG 25 FDG HN2 HN2 H 0 1 N N N 20.469 27.417 30.838 -6.053 -1.344 -2.902 HN2 FDG 26 FDG HN2A HN2A H 0 0 N N N 20.005 26.684 29.338 -4.658 -0.712 -3.593 HN2A FDG 27 FDG HN7 HN7 H 0 1 N N N 20.580 20.875 32.935 -2.859 -0.487 2.912 HN7 FDG 28 FDG "H1'" "H1'" H 0 1 N N N 21.242 25.778 34.401 -0.807 0.619 -1.771 "H1'" FDG 29 FDG "H2'" "H2'" H 0 1 N N N 19.803 25.495 36.383 -0.483 2.853 -1.363 "H2'" FDG 30 FDG "H3'" "H3'" H 0 1 N N N 21.823 25.771 38.164 1.317 2.375 1.019 "H3'" FDG 31 FDG "HO3'" "HO3'" H 0 0 N Y N 22.179 27.862 37.248 1.436 4.345 -0.384 "HO3'" FDG 32 FDG "H4'" "H4'" H 0 1 N N N 23.674 26.369 36.036 1.982 1.168 -1.726 "H4'" FDG 33 FDG "H5'" "H5'" H 0 1 N N N 24.562 25.660 38.059 3.760 1.439 0.081 "H5'" FDG 34 FDG "H5'A" "H5'A" H 0 0 N N N 23.696 24.097 37.992 2.784 0.370 1.117 "H5'A" FDG 35 FDG OP2 OP2 O 0 1 N N N 26.939 25.650 36.888 6.197 -0.227 -0.179 OP2 FDG 36 FDG HOP3 HOP3 H 0 0 N N N 28.426 24.118 36.332 6.026 -3.046 -0.647 HOP3 FDG 37 FDG HOP2 HOP2 H 0 0 N N N 27.817 25.883 37.166 6.363 0.062 -1.087 HOP2 FDG 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal FDG P "O5'" SING N N 1 FDG P OP1 DOUB N N 2 FDG P OP2 SING N N 3 FDG N1 C2 SING N N 4 FDG N1 C6 SING N N 5 FDG N1 HN1 SING N N 6 FDG C2 N2 SING N N 7 FDG C2 N3 DOUB N N 8 FDG N2 HN2 SING N N 9 FDG N2 HN2A SING N N 10 FDG N3 C4 SING N N 11 FDG C4 C5 DOUB N N 12 FDG C4 N9 SING N N 13 FDG C5 C6 SING N N 14 FDG C5 N7 SING N N 15 FDG C6 O6 DOUB N N 16 FDG N7 C8 SING N N 17 FDG N7 HN7 SING N N 18 FDG C8 O8 DOUB N N 19 FDG C8 N9 SING N N 20 FDG N9 "C1'" SING N N 21 FDG "C1'" "C2'" SING N N 22 FDG "C1'" "O4'" SING N N 23 FDG "C1'" "H1'" SING N N 24 FDG "C2'" "F2'" SING N N 25 FDG "C2'" "C3'" SING N N 26 FDG "C2'" "H2'" SING N N 27 FDG "C3'" "O3'" SING N N 28 FDG "C3'" "C4'" SING N N 29 FDG "C3'" "H3'" SING N N 30 FDG "O3'" "HO3'" SING N N 31 FDG "C4'" "O4'" SING N N 32 FDG "C4'" "C5'" SING N N 33 FDG "C4'" "H4'" SING N N 34 FDG "C5'" "O5'" SING N N 35 FDG "C5'" "H5'" SING N N 36 FDG "C5'" "H5'A" SING N N 37 FDG P OP3 SING N N 38 FDG OP3 HOP3 SING N N 39 FDG OP2 HOP2 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor FDG SMILES ACDLabs 12.01 "O=P(O)(O)OCC3OC(N2C(=O)NC1=C2N=C(N)NC1=O)C(F)C3O" FDG SMILES_CANONICAL CACTVS 3.370 "NC1=NC2=C(NC(=O)N2[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]3F)C(=O)N1" FDG SMILES CACTVS 3.370 "NC1=NC2=C(NC(=O)N2[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3F)C(=O)N1" FDG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C([C@@H]1[C@H]([C@@H]([C@@H](O1)N2C3=C(C(=O)NC(=N3)N)NC2=O)F)O)OP(=O)(O)O" FDG SMILES "OpenEye OEToolkits" 1.7.0 "C(C1C(C(C(O1)N2C3=C(C(=O)NC(=N3)N)NC2=O)F)O)OP(=O)(O)O" FDG InChI InChI 1.03 "InChI=1S/C10H13FN5O8P/c11-3-5(17)2(1-23-25(20,21)22)24-8(3)16-6-4(13-10(16)19)7(18)15-9(12)14-6/h2-3,5,8,17H,1H2,(H,13,19)(H2,20,21,22)(H3,12,14,15,18)/t2-,3+,5-,8-/m1/s1" FDG InChIKey InChI 1.03 UPQKRMLTATYYQE-HFZKREBBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FDG "SYSTEMATIC NAME" ACDLabs 12.01 "2-amino-9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-7,9-dihydro-1H-purine-6,8-dione" FDG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3R,4S,5R)-5-(2-azanyl-6,8-dioxo-1,7-dihydropurin-9-yl)-4-fluoro-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site FDG "Create component" 2010-01-06 RCSB FDG "Modify descriptor" 2011-06-04 RCSB #