data_FH8 # _chem_comp.id FH8 _chem_comp.name "5-carboxy methylrhodamine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H23 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2018-07-04 _chem_comp.pdbx_modified_date 2019-07-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 431.461 _chem_comp.one_letter_code ? _chem_comp.three_letter_code FH8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6GZK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal FH8 O3 O1 O 0 1 N N N -7.755 -3.520 -9.413 -6.250 -1.050 -1.668 O3 FH8 1 FH8 O5 O2 O 0 1 N N N -9.102 5.091 -6.081 2.849 0.190 -0.170 O5 FH8 2 FH8 OE O3 O 0 1 N N N -9.114 -0.905 -5.139 -2.328 0.784 3.135 OE FH8 3 FH8 C02 C1 C 0 1 N N N -9.622 0.057 -6.076 -1.575 0.515 2.050 C02 FH8 4 FH8 O2 O4 O 0 1 N N N -10.589 0.789 -5.908 -0.368 0.639 2.103 O2 FH8 5 FH8 C13 C2 C 0 1 Y N N -8.850 0.123 -7.391 -2.218 0.071 0.797 C13 FH8 6 FH8 C14 C3 C 0 1 Y N N -8.645 -1.098 -8.113 -3.599 -0.072 0.733 C14 FH8 7 FH8 C15 C4 C 0 1 Y N N -7.980 -1.125 -9.293 -4.200 -0.493 -0.454 C15 FH8 8 FH8 C03 C5 C 0 1 N N N -7.721 -2.388 -10.092 -5.668 -0.645 -0.523 C03 FH8 9 FH8 O4 O5 O 0 1 N N N -7.501 -2.307 -11.298 -6.351 -0.404 0.453 O4 FH8 10 FH8 C16 C6 C 0 1 Y N N -7.464 0.056 -9.809 -3.416 -0.770 -1.578 C16 FH8 11 FH8 C11 C7 C 0 1 Y N N -7.618 1.248 -9.159 -2.046 -0.630 -1.522 C11 FH8 12 FH8 C12 C8 C 0 1 Y N N -8.320 1.297 -7.935 -1.433 -0.206 -0.342 C12 FH8 13 FH8 C01 C9 C 0 1 N N N -8.519 2.658 -7.325 0.033 -0.056 -0.284 C01 FH8 14 FH8 C34 C10 C 0 1 N N N -9.356 3.575 -7.937 0.636 1.214 -0.304 C34 FH8 15 FH8 C33 C11 C 0 1 N N N -9.955 3.382 -9.222 -0.153 2.383 -0.381 C33 FH8 16 FH8 C32 C12 C 0 1 N N N -10.799 4.353 -9.783 0.441 3.597 -0.399 C32 FH8 17 FH8 C31 C13 C 0 1 N N N -11.105 5.526 -9.062 1.899 3.700 -0.339 C31 FH8 18 FH8 N2 N1 N 1 1 N N N -11.949 6.442 -9.580 2.479 4.893 -0.357 N2 FH8 19 FH8 C311 C14 C 0 0 N N N -12.391 7.597 -8.837 1.660 6.105 -0.436 C311 FH8 20 FH8 C321 C15 C 0 0 N N N -12.572 6.245 -10.888 3.939 4.998 -0.296 C321 FH8 21 FH8 C36 C16 C 0 1 N N N -10.533 5.717 -7.788 2.690 2.534 -0.262 C36 FH8 22 FH8 C35 C17 C 0 1 N N N -9.648 4.801 -7.308 2.095 1.307 -0.243 C35 FH8 23 FH8 C25 C18 C 0 1 Y N N -8.226 4.194 -5.461 2.308 -1.046 -0.148 C25 FH8 24 FH8 C26 C19 C 0 1 Y N N -7.725 4.588 -4.245 3.133 -2.159 -0.071 C26 FH8 25 FH8 C21 C20 C 0 1 Y N N -6.852 3.733 -3.558 2.579 -3.431 -0.049 C21 FH8 26 FH8 N3 N2 N 0 1 N N N -6.267 4.110 -2.435 3.410 -4.543 0.028 N3 FH8 27 FH8 C211 C21 C 0 0 N N N -6.504 5.459 -1.878 4.863 -4.370 0.085 C211 FH8 28 FH8 C221 C22 C 0 0 N N N -5.290 3.238 -1.716 2.831 -5.889 0.053 C221 FH8 29 FH8 C22 C23 C 0 1 Y N N -6.591 2.499 -4.123 1.194 -3.603 -0.101 C22 FH8 30 FH8 C23 C24 C 0 1 Y N N -7.136 2.097 -5.323 0.370 -2.520 -0.179 C23 FH8 31 FH8 C24 C25 C 0 1 Y N N -7.945 2.958 -6.057 0.913 -1.228 -0.202 C24 FH8 32 FH8 H1 H1 H 0 1 N N N -7.584 -4.247 -10.000 -7.213 -1.135 -1.666 H1 FH8 33 FH8 H2 H2 H 0 1 N N N -9.646 -0.893 -4.352 -1.863 1.072 3.932 H2 FH8 34 FH8 H14 H3 H 0 1 N N N -9.031 -2.021 -7.706 -4.206 0.141 1.601 H14 FH8 35 FH8 H16 H4 H 0 1 N N N -6.928 0.032 -10.746 -3.887 -1.095 -2.494 H16 FH8 36 FH8 H11 H5 H 0 1 N N N -7.203 2.152 -9.581 -1.447 -0.846 -2.394 H11 FH8 37 FH8 H33 H6 H 0 1 N N N -9.754 2.473 -9.770 -1.229 2.306 -0.426 H33 FH8 38 FH8 H32 H7 H 0 1 N N N -11.215 4.202 -10.768 -0.161 4.492 -0.458 H32 FH8 39 FH8 H313 H8 H 0 0 N N N -11.857 7.642 -7.876 1.411 6.442 0.570 H313 FH8 40 FH8 H311 H9 H 0 0 N N N -12.180 8.508 -9.416 2.216 6.886 -0.954 H311 FH8 41 FH8 H312 H10 H 0 0 N N N -13.473 7.522 -8.652 0.742 5.888 -0.983 H312 FH8 42 FH8 H321 H11 H 0 0 N N N -13.219 7.104 -11.120 4.346 4.988 -1.308 H321 FH8 43 FH8 H322 H12 H 0 0 N N N -11.790 6.157 -11.657 4.216 5.930 0.197 H322 FH8 44 FH8 H323 H13 H 0 0 N N N -13.175 5.325 -10.872 4.341 4.156 0.266 H323 FH8 45 FH8 H36 H14 H 0 1 N N N -10.795 6.583 -7.198 3.767 2.613 -0.219 H36 FH8 46 FH8 H26 H15 H 0 1 N N N -8.000 5.544 -3.823 4.205 -2.035 -0.030 H26 FH8 47 FH8 H211 H16 H 0 0 N N N -5.931 5.578 -0.947 5.180 -4.289 1.125 H211 FH8 48 FH8 H212 H17 H 0 0 N N N -6.182 6.218 -2.606 5.350 -5.229 -0.377 H212 FH8 49 FH8 H213 H18 H 0 0 N N N -7.576 5.585 -1.667 5.142 -3.462 -0.451 H213 FH8 50 FH8 H221 H19 H 0 0 N N N -4.934 3.754 -0.812 2.255 -6.054 -0.857 H221 FH8 51 FH8 H222 H20 H 0 0 N N N -5.780 2.295 -1.431 3.631 -6.627 0.115 H222 FH8 52 FH8 H223 H21 H 0 0 N N N -4.436 3.023 -2.376 2.178 -5.988 0.920 H223 FH8 53 FH8 H22 H22 H 0 1 N N N -5.932 1.821 -3.602 0.775 -4.598 -0.083 H22 FH8 54 FH8 H23 H23 H 0 1 N N N -6.933 1.104 -5.697 -0.701 -2.658 -0.220 H23 FH8 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal FH8 O4 C03 DOUB N N 1 FH8 C321 N2 SING N N 2 FH8 C03 O3 SING N N 3 FH8 C03 C15 SING N N 4 FH8 C16 C15 DOUB Y N 5 FH8 C16 C11 SING Y N 6 FH8 C32 C33 DOUB N N 7 FH8 C32 C31 SING N N 8 FH8 N2 C31 DOUB N N 9 FH8 N2 C311 SING N N 10 FH8 C15 C14 SING Y N 11 FH8 C33 C34 SING N N 12 FH8 C11 C12 DOUB Y N 13 FH8 C31 C36 SING N N 14 FH8 C14 C13 DOUB Y N 15 FH8 C34 C01 DOUB N N 16 FH8 C34 C35 SING N N 17 FH8 C12 C13 SING Y N 18 FH8 C12 C01 SING N N 19 FH8 C36 C35 DOUB N N 20 FH8 C13 C02 SING N N 21 FH8 C01 C24 SING N N 22 FH8 C35 O5 SING N N 23 FH8 O5 C25 SING N N 24 FH8 C02 O2 DOUB N N 25 FH8 C02 OE SING N N 26 FH8 C24 C25 DOUB Y N 27 FH8 C24 C23 SING Y N 28 FH8 C25 C26 SING Y N 29 FH8 C23 C22 DOUB Y N 30 FH8 C26 C21 DOUB Y N 31 FH8 C22 C21 SING Y N 32 FH8 C21 N3 SING N N 33 FH8 N3 C211 SING N N 34 FH8 N3 C221 SING N N 35 FH8 O3 H1 SING N N 36 FH8 OE H2 SING N N 37 FH8 C14 H14 SING N N 38 FH8 C16 H16 SING N N 39 FH8 C11 H11 SING N N 40 FH8 C33 H33 SING N N 41 FH8 C32 H32 SING N N 42 FH8 C311 H313 SING N N 43 FH8 C311 H311 SING N N 44 FH8 C311 H312 SING N N 45 FH8 C321 H321 SING N N 46 FH8 C321 H322 SING N N 47 FH8 C321 H323 SING N N 48 FH8 C36 H36 SING N N 49 FH8 C26 H26 SING N N 50 FH8 C211 H211 SING N N 51 FH8 C211 H212 SING N N 52 FH8 C211 H213 SING N N 53 FH8 C221 H221 SING N N 54 FH8 C221 H222 SING N N 55 FH8 C221 H223 SING N N 56 FH8 C22 H22 SING N N 57 FH8 C23 H23 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor FH8 InChI InChI 1.03 "InChI=1S/C25H22N2O5/c1-26(2)15-6-9-18-21(12-15)32-22-13-16(27(3)4)7-10-19(22)23(18)17-8-5-14(24(28)29)11-20(17)25(30)31/h5-13H,1-4H3,(H-,28,29,30,31)/p+1" FH8 InChIKey InChI 1.03 YMZMTOFQCVHHFB-UHFFFAOYSA-O FH8 SMILES_CANONICAL CACTVS 3.385 "CN(C)c1ccc2c(OC3=CC(C=CC3=C2c4ccc(cc4C(O)=O)C(O)=O)=[N+](C)C)c1" FH8 SMILES CACTVS 3.385 "CN(C)c1ccc2c(OC3=CC(C=CC3=C2c4ccc(cc4C(O)=O)C(O)=O)=[N+](C)C)c1" FH8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4ccc(cc4C(=O)O)C(=O)O" FH8 SMILES "OpenEye OEToolkits" 2.0.6 "CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4ccc(cc4C(=O)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id FH8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "[9-(2,4-dicarboxyphenyl)-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site FH8 "Create component" 2018-07-04 EBI FH8 "Initial release" 2019-07-17 RCSB ##