data_FMG # _chem_comp.id FMG _chem_comp.name "2-amino-9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-7-methyl-6-oxo-6,9-dihydro-1H-purin-7-ium" _chem_comp.type "DNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H16 F N5 O7 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2008-06-10 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 380.246 _chem_comp.one_letter_code G _chem_comp.three_letter_code FMG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3D4V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal FMG P P P 0 1 N N N 35.843 -10.248 4.881 -5.205 -0.808 0.425 P FMG 1 FMG OP2 OP2 O 0 1 N N N 35.089 -11.417 4.345 -5.051 -1.936 -0.713 OP2 FMG 2 FMG OP1 OP1 O 0 1 N N N 36.056 -9.051 4.020 -6.236 0.170 0.014 OP1 FMG 3 FMG OP3 OP3 O 0 1 N Y N 35.157 -9.760 6.244 -5.643 -1.500 1.811 OP3 FMG 4 FMG "O5'" "O5'" O 0 1 N N N 37.258 -10.752 5.411 -3.797 -0.052 0.624 "O5'" FMG 5 FMG "F1'" "F1'" F 0 1 N N N 36.237 -13.863 6.280 0.806 1.410 -1.997 "F1'" FMG 6 FMG N9 N9 N 0 1 Y N N 35.089 -13.358 8.929 1.433 -0.080 0.049 N9 FMG 7 FMG C8 C8 C 0 1 Y N N 33.957 -13.256 8.138 1.268 -1.295 -0.549 C8 FMG 8 FMG N7 N7 N 1 1 Y N N 32.864 -13.625 8.744 2.416 -1.899 -0.645 N7 FMG 9 FMG CM7 CM7 C 0 1 N N N 31.500 -13.621 8.135 2.631 -3.224 -1.233 CM7 FMG 10 FMG C5 C5 C 0 1 Y N N 33.266 -13.998 10.014 3.384 -1.110 -0.117 C5 FMG 11 FMG C4 C4 C 0 1 Y N N 34.646 -13.840 10.144 2.764 0.062 0.333 C4 FMG 12 FMG N3 N3 N 0 1 N N N 35.432 -14.098 11.239 3.499 1.023 0.904 N3 FMG 13 FMG C2 C2 C 0 1 N N N 34.726 -14.560 12.291 4.798 0.887 1.053 C2 FMG 14 FMG N2 N2 N 0 1 N N N 35.350 -14.862 13.443 5.510 1.899 1.645 N2 FMG 15 FMG N1 N1 N 0 1 N N N 33.343 -14.750 12.260 5.458 -0.230 0.636 N1 FMG 16 FMG C6 C6 C 0 1 N N N 32.519 -14.489 11.143 4.782 -1.243 0.050 C6 FMG 17 FMG O6 O6 O 0 1 N N N 31.299 -14.693 11.228 5.363 -2.247 -0.326 O6 FMG 18 FMG "C2'" "C2'" C 0 1 N N S 37.071 -13.668 7.332 0.294 1.940 -0.808 "C2'" FMG 19 FMG "C5'" "C5'" C 0 1 N N N 37.752 -10.294 6.677 -3.192 0.747 -0.394 "C5'" FMG 20 FMG "C4'" "C4'" C 0 1 N N R 37.889 -11.430 7.664 -1.869 1.316 0.123 "C4'" FMG 21 FMG "O4'" "O4'" O 0 1 N N N 36.647 -11.648 8.385 -0.914 0.255 0.338 "O4'" FMG 22 FMG "C1'" "C1'" C 0 1 N N R 36.489 -13.030 8.580 0.379 0.898 0.330 "C1'" FMG 23 FMG "C3'" "C3'" C 0 1 N N R 38.257 -12.772 7.016 -1.219 2.221 -0.947 "C3'" FMG 24 FMG "O3'" "O3'" O 0 1 N N N 39.451 -13.271 7.614 -1.499 3.596 -0.677 "O3'" FMG 25 FMG H8 H8 H 0 1 N N N 33.978 -12.904 7.117 0.325 -1.696 -0.891 H8 FMG 26 FMG HM7 HM7 H 0 1 N N N 30.742 -13.620 8.932 2.834 -3.120 -2.299 HM7 FMG 27 FMG HM7A HM7A H 0 0 N N N 31.379 -12.722 7.513 3.480 -3.704 -0.746 HM7A FMG 28 FMG HM7B HM7B H 0 0 N N N 31.375 -14.518 7.511 1.738 -3.833 -1.090 HM7B FMG 29 FMG HN2 HN2 H 0 1 N N N 34.689 -15.189 14.119 5.055 2.700 1.948 HN2 FMG 30 FMG HN2A HN2A H 0 0 N N N 36.333 -14.773 13.601 6.470 1.814 1.762 HN2A FMG 31 FMG HN1 HN1 H 0 1 N N N 32.904 -15.096 13.089 6.417 -0.299 0.760 HN1 FMG 32 FMG "H2'" "H2'" H 0 1 N N N 37.335 -14.718 7.527 0.830 2.848 -0.534 "H2'" FMG 33 FMG "H5'" "H5'" H 0 1 N N N 38.740 -9.835 6.526 -3.003 0.132 -1.274 "H5'" FMG 34 FMG "H5'A" "H5'A" H 0 0 N N N 37.035 -9.567 7.085 -3.861 1.566 -0.660 "H5'A" FMG 35 FMG "H4'" "H4'" H 0 1 N N N 38.704 -11.115 8.332 -2.032 1.873 1.045 "H4'" FMG 36 FMG "H1'" "H1'" H 0 1 N N N 37.028 -13.439 9.448 0.564 1.392 1.284 "H1'" FMG 37 FMG "H3'" "H3'" H 0 1 N N N 38.445 -12.705 5.934 -1.568 1.948 -1.943 "H3'" FMG 38 FMG "HO3'" "HO3'" H 0 0 N Y N 40.118 -13.382 6.946 -1.065 4.213 -1.284 "HO3'" FMG 39 FMG HOP2 HOP2 H 0 0 N N N 34.929 -11.292 3.417 -4.390 -2.612 -0.510 HOP2 FMG 40 FMG HOP3 HOP3 H 0 0 N N N 35.821 -9.663 6.916 -6.484 -1.974 1.765 HOP3 FMG 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal FMG P OP2 SING N N 1 FMG P OP1 DOUB N N 2 FMG P OP3 SING N N 3 FMG P "O5'" SING N N 4 FMG "O5'" "C5'" SING N N 5 FMG "F1'" "C2'" SING N N 6 FMG N9 C8 SING Y N 7 FMG N9 C4 SING Y N 8 FMG N9 "C1'" SING N N 9 FMG C8 N7 DOUB Y N 10 FMG C8 H8 SING N N 11 FMG N7 CM7 SING N N 12 FMG N7 C5 SING Y N 13 FMG CM7 HM7 SING N N 14 FMG CM7 HM7A SING N N 15 FMG CM7 HM7B SING N N 16 FMG C5 C4 DOUB Y N 17 FMG C5 C6 SING N N 18 FMG C4 N3 SING N N 19 FMG N3 C2 DOUB N N 20 FMG C2 N2 SING N N 21 FMG C2 N1 SING N N 22 FMG N2 HN2 SING N N 23 FMG N2 HN2A SING N N 24 FMG N1 C6 SING N N 25 FMG N1 HN1 SING N N 26 FMG C6 O6 DOUB N N 27 FMG "C2'" "C1'" SING N N 28 FMG "C2'" "C3'" SING N N 29 FMG "C2'" "H2'" SING N N 30 FMG "C5'" "C4'" SING N N 31 FMG "C5'" "H5'" SING N N 32 FMG "C5'" "H5'A" SING N N 33 FMG "C4'" "O4'" SING N N 34 FMG "C4'" "C3'" SING N N 35 FMG "C4'" "H4'" SING N N 36 FMG "O4'" "C1'" SING N N 37 FMG "C1'" "H1'" SING N N 38 FMG "C3'" "O3'" SING N N 39 FMG "C3'" "H3'" SING N N 40 FMG "O3'" "HO3'" SING N N 41 FMG OP2 HOP2 SING N N 42 FMG OP3 HOP3 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor FMG SMILES ACDLabs 10.04 "O=C1c2[n+](cn(c2N=C(N)N1)C3OC(C(O)C3F)COP(=O)(O)O)C" FMG SMILES_CANONICAL CACTVS 3.341 "C[n+]1cn([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]2F)c3N=C(N)NC(=O)c13" FMG SMILES CACTVS 3.341 "C[n+]1cn([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2F)c3N=C(N)NC(=O)c13" FMG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[n+]1cn(c2c1C(=O)NC(=N2)N)[C@H]3[C@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)F" FMG SMILES "OpenEye OEToolkits" 1.5.0 "C[n+]1cn(c2c1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)O)O)F" FMG InChI InChI 1.03 "InChI=1S/C11H15FN5O7P/c1-16-3-17(8-6(16)9(19)15-11(13)14-8)10-5(12)7(18)4(24-10)2-23-25(20,21)22/h3-5,7,10,18H,2H2,1H3,(H4-,13,14,15,19,20,21,22)/p+1/t4-,5+,7-,10-/m1/s1" FMG InChIKey InChI 1.03 JUZJEHBSRYAJTC-GQTRHBFLSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FMG "SYSTEMATIC NAME" ACDLabs 10.04 "2-amino-9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-7-methyl-6-oxo-6,9-dihydro-1H-purin-7-ium" FMG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4S,5R)-5-(2-amino-7-methyl-6-oxo-1H-purin-7-ium-9-yl)-4-fluoro-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site FMG "Create component" 2008-06-10 RCSB FMG "Modify aromatic_flag" 2011-06-04 RCSB FMG "Modify descriptor" 2011-06-04 RCSB #